ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_506148.1| PREDICTED Oryza sativa (japonica cultivar-group... 88 2e-14
2ref|XM_476451.1| Oryza sativa (japonica cultivar-group), mRNA 88 2e-14
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
4dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
5dbj|AK101000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
6dbj|AK070529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
7ref|XM_463934.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
9dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
10emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 ... 42 1.1
11emb|AL954240.1| Pan troglodytes chromosome 22 clone PTB-045O21 m... 42 1.1
12gb|AC022568.7| Homo sapiens chromosome 8, clone RP11-10H3, compl... 42 1.1
13gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
14gb|BC092206.1| Rattus norvegicus vesicle-associated membrane pro... 40 4.3
15ref|NM_013090.2| Rattus norvegicus vesicle-associated membrane p... 40 4.3
16emb|AJ426040.1|TRU426040 Takifugu rubripes vader gene, cetn gene... 40 4.3
17emb|AL928933.7| Mouse DNA sequence from clone RP23-419H6 on chro... 40 4.3
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
20gb|M24104.1|RATVAMPIR Rat vesicle associated membrane protein (V... 40 4.3 
>ref|XM_506148.1| PREDICTED Oryza sativa (japonica cultivar-group), P0474G09.102 mRNA
          Length = 3214

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 76/86 (88%), Gaps = 3/86 (3%)
 Strand = Plus / Minus

                                                                        
Query: 218  gaaccagactggttgcgagaccttcc---atcctggaaccgagaactaccaccatagccg 274
            ||||||||||||||||||||||||||   ||| ||||| || |||| |||||||||||| 
Sbjct: 2911 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2852

                                      
Query: 275  ccacgggaaccctggccacccctgtc 300
            |||||||||||||| | |||||||||
Sbjct: 2851 ccacgggaaccctgactacccctgtc 2826
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>ref|XM_476451.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3207

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 76/86 (88%), Gaps = 3/86 (3%)
 Strand = Plus / Minus

                                                                        
Query: 218  gaaccagactggttgcgagaccttcc---atcctggaaccgagaactaccaccatagccg 274
            ||||||||||||||||||||||||||   ||| ||||| || |||| |||||||||||| 
Sbjct: 2904 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2845

                                      
Query: 275  ccacgggaaccctggccacccctgtc 300
            |||||||||||||| | |||||||||
Sbjct: 2844 ccacgggaaccctgactacccctgtc 2819
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 76/86 (88%), Gaps = 3/86 (3%)
 Strand = Plus / Minus

                                                                           
Query: 218     gaaccagactggttgcgagaccttcc---atcctggaaccgagaactaccaccatagccg 274
               ||||||||||||||||||||||||||   ||| ||||| || |||| |||||||||||| 
Sbjct: 1277414 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 1277355

                                         
Query: 275     ccacgggaaccctggccacccctgtc 300
               |||||||||||||| | |||||||||
Sbjct: 1277354 ccacgggaaccctgactacccctgtc 1277329
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>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0474G09
          Length = 169511

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 76/86 (88%), Gaps = 3/86 (3%)
 Strand = Plus / Minus

                                                                         
Query: 218   gaaccagactggttgcgagaccttcc---atcctggaaccgagaactaccaccatagccg 274
             ||||||||||||||||||||||||||   ||| ||||| || |||| |||||||||||| 
Sbjct: 42249 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 42190

                                       
Query: 275   ccacgggaaccctggccacccctgtc 300
             |||||||||||||| | |||||||||
Sbjct: 42189 ccacgggaaccctgactacccctgtc 42164
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>dbj|AK101000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147D18, full
            insert sequence
          Length = 3206

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 76/86 (88%), Gaps = 3/86 (3%)
 Strand = Plus / Minus

                                                                        
Query: 218  gaaccagactggttgcgagaccttcc---atcctggaaccgagaactaccaccatagccg 274
            ||||||||||||||||||||||||||   ||| ||||| || |||| |||||||||||| 
Sbjct: 2903 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2844

                                      
Query: 275  ccacgggaaccctggccacccctgtc 300
            |||||||||||||| | |||||||||
Sbjct: 2843 ccacgggaaccctgactacccctgtc 2818
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>dbj|AK070529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060K11, full
            insert sequence
          Length = 3214

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 76/86 (88%), Gaps = 3/86 (3%)
 Strand = Plus / Minus

                                                                        
Query: 218  gaaccagactggttgcgagaccttcc---atcctggaaccgagaactaccaccatagccg 274
            ||||||||||||||||||||||||||   ||| ||||| || |||| |||||||||||| 
Sbjct: 2911 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2852

                                      
Query: 275  ccacgggaaccctggccacccctgtc 300
            |||||||||||||| | |||||||||
Sbjct: 2851 ccacgggaaccctgactacccctgtc 2826
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>ref|XM_463934.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2784

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 242  ccatcctggaaccgagaactaccaccatagccgccacgggaaccctg 288
            ||||||||||| || |||| |||||||||||| ||||| ||||||||
Sbjct: 2714 ccatcctggaagcgtgaaccaccaccatagcctccacgagaaccctg 2668
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                              
Query: 242     ccatcctggaaccgagaactaccaccatagccgccacgggaaccctg 288
               ||||||||||| || |||| |||||||||||| ||||| ||||||||
Sbjct: 1222640 ccatcctggaagcgtgaaccaccaccatagcctccacgagaaccctg 1222594
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>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0575F10
          Length = 150462

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 242   ccatcctggaaccgagaactaccaccatagccgccacgggaaccctg 288
             ||||||||||| || |||| |||||||||||| ||||| ||||||||
Sbjct: 53731 ccatcctggaagcgtgaaccaccaccatagcctccacgagaaccctg 53685
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>emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 map 22q22.2-q22.3,
             complete sequence
          Length = 212865

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 56    gaagctacaaaaatatagcaa 76
             |||||||||||||||||||||
Sbjct: 27917 gaagctacaaaaatatagcaa 27897
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>emb|AL954240.1| Pan troglodytes chromosome 22 clone PTB-045O21 map 22q22.2-q22.3,
              complete sequence
          Length = 164591

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 56     gaagctacaaaaatatagcaa 76
              |||||||||||||||||||||
Sbjct: 111168 gaagctacaaaaatatagcaa 111148
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>gb|AC022568.7| Homo sapiens chromosome 8, clone RP11-10H3, complete sequence
          Length = 138073

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 42    tatgacagataacagaagcta 62
             |||||||||||||||||||||
Sbjct: 29065 tatgacagataacagaagcta 29045
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>gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0058P12, complete sequence
          Length = 173073

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 55    agaagctacaaaaatatagcaaac 78
             |||||||||||||| |||||||||
Sbjct: 52479 agaagctacaaaaaaatagcaaac 52456
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>gb|BC092206.1| Rattus norvegicus vesicle-associated membrane protein 1, mRNA (cDNA
            clone MGC:105480 IMAGE:7313343), complete cds
          Length = 2554

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 44   tgacagataacagaagctacaaaa 67
            ||||||||||||| ||||||||||
Sbjct: 1060 tgacagataacagtagctacaaaa 1037
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>ref|NM_013090.2| Rattus norvegicus vesicle-associated membrane protein 1 (Vamp1), mRNA
          Length = 2650

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 44   tgacagataacagaagctacaaaa 67
            ||||||||||||| ||||||||||
Sbjct: 1162 tgacagataacagtagctacaaaa 1139
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>emb|AJ426040.1|TRU426040 Takifugu rubripes vader gene, cetn gene, fgf2 gene, gfg gene and spaf
             gene, cosmid 196n09
          Length = 29053

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    ataacagaagctacaaaaatatag 73
             ||||||| ||||||||||||||||
Sbjct: 21269 ataacagtagctacaaaaatatag 21246
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>emb|AL928933.7| Mouse DNA sequence from clone RP23-419H6 on chromosome X, complete
              sequence
          Length = 171812

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 284    ccctggccacccctgtcatt 303
              ||||||||||||||||||||
Sbjct: 166570 ccctggccacccctgtcatt 166551
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 55      agaagctacaaaaatatagcaaac 78
               |||||||||||||| |||||||||
Sbjct: 4942414 agaagctacaaaaaaatagcaaac 4942437
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 55      agaagctacaaaaatatagcaaac 78
               |||||||||||||| |||||||||
Sbjct: 4961198 agaagctacaaaaaaatagcaaac 4961221
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>gb|M24104.1|RATVAMPIR Rat vesicle associated membrane protein (VAMP-1) mRNA, complete cds
          Length = 1482

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 44   tgacagataacagaagctacaaaa 67
            ||||||||||||| ||||||||||
Sbjct: 1064 tgacagataacagtagctacaaaa 1041


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,336,343
Number of Sequences: 3902068
Number of extensions: 2336343
Number of successful extensions: 48401
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48295
Number of HSP's gapped (non-prelim): 100
length of query: 329
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 307
effective length of database: 17,147,199,772
effective search space: 5264190330004
effective search space used: 5264190330004
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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