>YDN1_SCHPO (P87293) Hypothetical protein C16A10.01 in chromosome I|
          Length = 830

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 168 NINTYNMMKSGEDRKPPGLLSNTTIMGHVPTRDMKIVQ 281
           N  TYN++    D  P   +S  T M H P+   K++Q
Sbjct: 232 NQYTYNLLGKSTDESPKITISAGTSMSHFPSASSKLIQ 269

>YJLA_BACSU (O34428) Hypothetical protein yjlA|
          Length = 324

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 187 MLYVLMFAFFFLLPPTVQKSSRACIWSSVLAYVHKITFHC*AVDIR 50
           +L  L FA  F+L   ++ S  + +WSS L ++  + F C  V +R
Sbjct: 8   ILASLFFAVTFILNRAMELSGGSWLWSSSLRFIFMVPFLCLIVIMR 53

>NNP1_HUMAN (P56182) NNP-1 protein (Novel nuclear protein 1) (Nucleolar protein|
           Nop52) (D21S2056E)
          Length = 461

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 110 PDTSSRRLLNRRRQKEKKSKH*YVQHDEERGR 205
           P+ + RRLL  RRQK+ K +   ++  +ERG+
Sbjct: 345 PEKACRRLLEGRRQKKTKKQKRLLRLQQERGK 376

>MUS81_NEUCR (Q7SD49) Crossover junction endonuclease mus-81 (EC 3.1.22.-)|
          Length = 645

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 49  LLCPRLSSGK*SCEHMLKHLTRYKL*KTFEP--SEAKGKKKQTLI 177
           L+C R  SG+ + E      T Y+L K FE   S+  GKKKQ ++
Sbjct: 572 LMCIRRLSGEKAIEIQKVWKTPYQLVKAFEACGSDENGKKKQKVL 616

>SYL_COREF (Q8FLM0) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 957

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 263 GHEDCAALSSLEPFPFALTIWLFLELYRSY 352
           GH+   A++S +P  +  T W+FL+++ S+
Sbjct: 147 GHDPRRAVASTDPEFYKWTQWIFLQIFNSW 176

>NAS37_CAEEL (Q93243) Zinc metalloproteinase nas-37 precursor (EC 3.4.24.21)|
           (Nematode astacin 37)
          Length = 765

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 263 PCWNVTHNCRVGQEAWRLTVFPALHHVVRINVCFFF 156
           P   +++    G+E WR  +  A+ HV + NVCF F
Sbjct: 125 PNLTISYEFYGGEETWRQLIRSAIRHVEQ-NVCFKF 159

>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)|
           (NSP-like protein 1) (NSPLI)
          Length = 545

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 312 AKGNGSREDSAAQSSCPVLERDP 244
           A+G GS EDS+  SS P+ + +P
Sbjct: 151 ARGTGSGEDSSTSSSTPLEDEEP 173

>COAT_SOUV3 (Q04542) Capsid protein (Coat protein)|
          Length = 546

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -2

Query: 169 FAFFFLLPPTVQKSSRA 119
           F+F FL+PPT+++ +RA
Sbjct: 215 FSFLFLVPPTIEQKTRA 231

>YAP2_YEAST (P24813) AP-1-like transcription activator YAP2 (Transcription|
           factor CAD1) (Cadmium resistance protein 1)
          Length = 409

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 10  HEKTIKSYKWRHELLCPRLSSGK*SCEHMLKHLT 111
           H KTI++     E +   +S+GK SC H+L+ ++
Sbjct: 331 HTKTIRTQSEAIEHISSAISNGKASCYHILEEIS 364

>SYL_STRAW (Q82C66) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 962

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +2

Query: 251 RSNTGHEDCAALSSLEPFPFALTIWLFLELYRSY 352
           R   GH+   + ++++P  +  T W+FL+++ S+
Sbjct: 141 RLGLGHDKRRSFATIDPDYYKWTQWIFLQIFNSW 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,798,572
Number of Sequences: 219361
Number of extensions: 905906
Number of successful extensions: 2152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2152
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)