>PYRB_BACTN (Q8A9S3) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate|
           transcarbamylase) (ATCase)
          Length = 313

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = -1

Query: 293 CRNDFPKFRKHTEQKGTTEDNIEKESLKHMILIRRGKLNLQVEYVSIRK*LLLPNVILQM 114
           C+    K+ +HTE    TE+ I    + +M  ++R +    +EY  ++   +L N +L+ 
Sbjct: 196 CKEHQIKYIEHTE---FTEEIIADADILYMTRVQRERFTDLMEYERVKNVYILRNKMLEN 252

Query: 113 TKLTVNILY 87
           T+  + IL+
Sbjct: 253 TRPNLRILH 261

>YCF2_MARPO (P09975) Protein ycf2|
          Length = 2136

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 157  LTYSTCKFNFPRLIRIICFRLSFSILSSV-VPFCSVCFLNLG 279
            LTY+  K NF R+ +I+ +++  +I+ ++ +   S+  LN+G
Sbjct: 1623 LTYTNNKLNFDRIFKIVIYKVGKTIIQNILIKSSSMNLLNIG 1664

>PUB2_SCHPO (Q9UTG2) E3 ubiquitin--protein ligase pub2 (EC 6.3.2.-)|
          Length = 671

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -1

Query: 326 YAKVEGLVPERCRNDFPKFRKHTEQKGTTEDNIEKESLKHMI 201
           + K+E L P++ +  F +F  + + K + + N+E + +KH++
Sbjct: 183 HEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYKVIKHLL 224

>ULA1_SCHPO (Q9UT93) NEDD8-activating enzyme E1 regulatory subunit|
           (Ubiquitin-like activation protein 1)
           (Ubiquitin-activating enzyme E1-like 1)
          Length = 500

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -1

Query: 338 SRDQYAKVEGLVPERCRNDFPKFRKHTEQK----GTTEDNIEKESLKHMILIRRGKLNLQ 171
           S  QY K++ +  E+  ND  KF+K+ +Q       + + I    +KH     R  LN++
Sbjct: 322 STQQYVKLQVIYKEKSENDILKFKKYVQQTLKRLNRSVEEITDLEIKH---FSRNCLNIK 378

Query: 170 V 168
           V
Sbjct: 379 V 379

>PDCD1_HUMAN (Q15116) Programmed cell death protein 1 precursor (Protein PD-1)|
           (hPD-1) (CD279 antigen)
          Length = 288

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 23  TCSMNNATK-FVLNWYKILANNGT 91
           TCS +N ++ FVLNWY++  +N T
Sbjct: 53  TCSFSNTSESFVLNWYRMSPSNQT 76

>YIF1A_BRARE (Q6PC24) Protein YIF1A (YIP1-interacting factor homolog A)|
          Length = 307

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 112 VICKITLGSNSYFLILTYSTCKFNFPRLIRIICFRLSFSILSSV 243
           V C +  GS+ Y++ L +S+C   F      I   L   ILSS+
Sbjct: 229 VFCGLLFGSDGYYVALAWSSCALMF-----FIVRSLKMKILSSI 267

>CYAA_SACKL (P23466) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 1839

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 335 RDQYAKVEGLVPERCRNDFPKFRKHTEQKGTTEDNIEKE 219
           R+++ ++E    E   N  PKF+KH     TT  N E +
Sbjct: 14  REKHPQIEETFEEHVHNAMPKFKKHYALGITTHTNDEDD 52

>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (hN2) [Contains: Notch 2 extracellular truncation; Notch
            2 intracellular domain]
          Length = 2471

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 1    STILPSYDMLNEQCDQIC 54
            S+ LP +D +N QCD++C
Sbjct: 1467 SSPLPCWDYINNQCDELC 1484

>PPCK_RHOPA (Q9ZNH4) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 537

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 335 RDQYAKVEGLVPERCRNDFPKFRKHTEQKGTTEDNI 228
           R + A++E  VPE    D P FR   ++ G   +N+
Sbjct: 143 RPERAELENFVPELTLIDLPSFRADPKRHGCRSENV 178

>ACVS_STRCL (Q01757) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine|
           synthase (EC 6.3.2.26)
           (Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine
           synthetase) (ACV synthetase) (ACVS) (Fragment)
          Length = 805

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 308 LVPERCRNDFPKFRKHTEQKGTTEDNIEKESLKHMILIRRGKL 180
           +VPE  R D  +F  + E+ G T  N     L+H  L RR  L
Sbjct: 490 VVPEEVRLDPDRFPAYIEEHGVTYLNATGSVLQHFDLRRRTSL 532

>UBIQ_LEITA (P49635) Ubiquitin|
          Length = 76

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 314 EGLVPERCRNDFPKFRKHTEQKGTTED-NIEKESLKHMILIRRG 186
           EG+ P++ R  F    K  E+  T  D NI+KES  H++L  RG
Sbjct: 34  EGIPPDQQRLIFAD--KQLEEGRTLSDYNIQKESTLHLVLRLRG 75

>HYPF_SYNY3 (Q55638) Carbamoyltransferase hypF (EC 2.1.3.-) (Carbamoyl|
           phosphate-converting enzyme hypF) ([NiFe]-hydrogenase
           maturation factor hypF) (Hydrogenase maturation protein
           hypF)
          Length = 767

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 386 DPSPSFTSYCRSFCCYSRDQYAKVEGLVPERCRNDFPKFRKHTE 255
           DPS     Y    C +   +Y  +E L  +RCR    +FR+ T+
Sbjct: 116 DPSDRRYLYPFINCTHCGPRYTIIEALPYDRCRTTMARFRQCTD 159

>NRAM4_ARATH (Q9FN18) Metal transporter Nramp4 (AtNramp4)|
          Length = 512

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 9/46 (19%), Positives = 25/46 (54%)
 Frame = +1

Query: 94  ILTVSFVICKITLGSNSYFLILTYSTCKFNFPRLIRIICFRLSFSI 231
           + T+S+++  + +  N Y ++  +S    N   L+ +I F +++ +
Sbjct: 437 VQTISWIVAALVIAINGYLMVDFFSGAATNLILLVPVIIFAIAYVV 482

>KHSE_PHOPR (Q6LUP9) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)|
          Length = 318

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -1

Query: 98 NILYHCWLIF 69
          NI+YHCWL+F
Sbjct: 65 NIVYHCWLVF 74

>ATM_ARATH (Q9M3G7) Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia|
            telangiectasia mutated homolog) (AtATM)
          Length = 3856

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 13   PSYDMLNEQCDQICTQLVQNISQQWYKI 96
            P+  +  EQ  +IC +LV   SQ W+ +
Sbjct: 3179 PAVSLAEEQSSKICKRLVDRQSQTWFHL 3206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,654,504
Number of Sequences: 219361
Number of extensions: 1004717
Number of successful extensions: 2409
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2409
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)