ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK102301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 4e-34
2ref|NM_188560.1| Oryza sativa (japonica cultivar-group), predic... 149 7e-33
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
4dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
5dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
6ref|NM_105085.2| Arabidopsis thaliana ATP binding / ATPase/ nucl... 94 3e-16
7ref|NM_179511.1| Arabidopsis thaliana ATP binding / ATPase/ nucl... 94 3e-16
8gb|AY056097.1| Arabidopsis thaliana At1g64110/F22C12_22 mRNA, co... 94 3e-16
9gb|BT006360.1| Arabidopsis thaliana At1g64110/F22C12_22 gene, co... 94 3e-16
10gb|AC007764.2|AC007764 Genomic sequence for Arabidopsis thaliana... 80 5e-12
11dbj|AB009055.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 68 2e-08
12gb|AC148655.4| Medicago truncatula clone mth2-61c11, complete se... 56 7e-05
13ref|NM_118938.1| Arabidopsis thaliana ATP binding / ATPase/ nucl... 54 3e-04
14emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, ... 54 3e-04
15emb|AL035524.1|ATT13J8 Arabidopsis thaliana DNA chromosome 4, BA... 54 3e-04
16ref|NM_116481.2| Arabidopsis thaliana ATP binding / ATPase/ nucl... 48 0.018
17gb|AY090948.1| Arabidopsis thaliana unknown protein (At4g02480) ... 48 0.018
18emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, c... 48 0.018
19gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8 48 0.018
20gb|AC150980.20| Medicago truncatula clone mth2-165j9, complete s... 46 0.071
21ref|XM_475967.1| Oryza sativa (japonica cultivar-group), predic... 44 0.28
22gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.28
23gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.28
24emb|AL080275.20|HSDJ149L1 Human DNA sequence from clone RP1-149L... 44 0.28
25dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.28
26dbj|AK072537.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.28
27dbj|AK065926.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.28
28gb|AC148527.20| Medicago truncatula clone mth2-49g13, complete s... 42 1.1
29gb|AC005146.1| Homo sapiens 12 PAC RP1-157K6 (Roswell Park Cance... 42 1.1
30ref|NM_100170.2| Arabidopsis thaliana ATP binding / ATPase/ nucl... 40 4.4
31gb|AC113121.27| Mus musculus chromosome 8, clone RP23-347G12, co... 40 4.4
32gb|AC006794.3| Caenorhabditis elegans cosmid Y50D4A, complete se... 40 4.4
33gb|AC104613.2| Drosophila melanogaster clone BACR06K07, complete... 40 4.4
34gb|AC147628.4| Mus musculus BAC clone RP24-476D20 from chromosom... 40 4.4
35gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 4.4
36gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16 geno... 40 4.4
37emb|AL355604.11| Human DNA sequence from clone RP11-404E6 on chr... 40 4.4
38gb|AC164524.5| Mus musculus BAC RP23-438F8 (Roswell Park Cancer... 40 4.4
39gb|AC013432.4| Drosophila melanogaster, chromosome X, region 15F... 40 4.4
40gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold 40 4.4
41gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosom... 40 4.4
42gb|AC155657.8| Mus musculus 6 BAC RP24-113L15 (Roswell Park Canc... 40 4.4
43gb|AC140366.2| Mus musculus BAC clone RP24-225H21 from chromosom... 40 4.4
44dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 4.4
45emb|AL929331.15| Zebrafish DNA sequence from clone DKEY-16O9, co... 40 4.4
46gb|AC140070.3| Mus musculus BAC clone RP24-161L16 from 9, comple... 40 4.4
47gb|AY109177.1| Zea mays PCO089905 mRNA sequence 40 4.4
48gb|AE003609.4| Drosophila melanogaster chromosome 2L, section 18... 40 4.4
49gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 ... 40 4.4
50gb|AC005750.1|AC005750 Drosophila melanogaster DNA sequence (P1s... 40 4.4
51gb|L77738.1|SYNAEVRV Retroviral vector leader sequence 40 4.4

>dbj|AK102301.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089N14, full
            insert sequence
          Length = 2913

 Score =  153 bits (77), Expect = 4e-34
 Identities = 125/141 (88%)
 Strand = Plus / Minus

                                                                        
Query: 190  gttcagaggaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatca 249
            |||||||| |||||||||||||| |  ||||| || ||||| |||||||| ||||| |||
Sbjct: 2715 gttcagagaaagtatgtcaactgttgtttctttctggagcctccttcaccgtacaactca 2656

                                                                        
Query: 250  ttccattgcttcaactcacccattatggaaccttcagcagcaaaactcgccgccacctgg 309
            ||||||||||||| |||||||||||| |  |||||||||||||| || ||||||||||||
Sbjct: 2655 ttccattgcttcagctcacccattattgttccttcagcagcaaagcttgccgccacctgg 2596

                                 
Query: 310  ttctttgcttctttcaaatct 330
            || ||||||||||||||||||
Sbjct: 2595 ttttttgcttctttcaaatct 2575



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 129  ctattttctcgtagttgtttgccatctattctactttccaaattatgttcatacact 185
            |||||||| | | ||||||| || ||||||||| ||| |||||||||||||||||||
Sbjct: 2787 ctattttcacatggttgttttccgtctattctagttttcaaattatgttcatacact 2731



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>ref|NM_188560.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2433

 Score =  149 bits (75), Expect = 7e-33
 Identities = 123/139 (88%)
 Strand = Plus / Minus

                                                                        
Query: 192  tcagaggaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatcatt 251
            |||||| |||||||||||||| |  ||||| || ||||| |||||||| ||||| |||||
Sbjct: 2433 tcagagaaagtatgtcaactgttgtttctttctggagcctccttcaccgtacaactcatt 2374

                                                                        
Query: 252  ccattgcttcaactcacccattatggaaccttcagcagcaaaactcgccgccacctggtt 311
            ||||||||||| |||||||||||| |  |||||||||||||| || ||||||||||||||
Sbjct: 2373 ccattgcttcagctcacccattattgttccttcagcagcaaagcttgccgccacctggtt 2314

                               
Query: 312  ctttgcttctttcaaatct 330
             ||||||||||||||||||
Sbjct: 2313 ttttgcttctttcaaatct 2295



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  117 bits (59), Expect = 2e-23
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                           
Query: 190     gttcagaggaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatca 249
               |||||||| |||||||||||||| |  ||||| || ||||| |||||||| ||||| |||
Sbjct: 6970110 gttcagagaaagtatgtcaactgttgtttctttctggagcctccttcaccgtacaactca 6970169

                                                                          
Query: 250     ttccattgcttcaactcacccattatggaaccttcagcagcaaaactcgccgccacctg 308
               ||||||||||||| |||||||||||| |  |||||||||||||| || |||||||||||
Sbjct: 6970170 ttccattgcttcagctcacccattattgttccttcagcagcaaagcttgccgccacctg 6970228



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                        
Query: 129     ctattttctcgtagttgtttgccatctattctactttccaaattatgttcatacact 185
               |||||||| | | ||||||| || ||||||||| ||| |||||||||||||||||||
Sbjct: 6970038 ctattttcacatggttgttttccgtctattctagttttcaaattatgttcatacact 6970094



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                           
Query: 303     cacctggttctttgcttctttcaaatct 330
               ||||||||| ||||||||||||||||||
Sbjct: 6970354 cacctggttttttgcttctttcaaatct 6970381



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>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0492F05
          Length = 159242

 Score =  117 bits (59), Expect = 2e-23
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                          
Query: 190    gttcagaggaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatca 249
              |||||||| |||||||||||||| |  ||||| || ||||| |||||||| ||||| |||
Sbjct: 137834 gttcagagaaagtatgtcaactgttgtttctttctggagcctccttcaccgtacaactca 137893

                                                                         
Query: 250    ttccattgcttcaactcacccattatggaaccttcagcagcaaaactcgccgccacctg 308
              ||||||||||||| |||||||||||| |  |||||||||||||| || |||||||||||
Sbjct: 137894 ttccattgcttcagctcacccattattgttccttcagcagcaaagcttgccgccacctg 137952



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                       
Query: 129    ctattttctcgtagttgtttgccatctattctactttccaaattatgttcatacact 185
              |||||||| | | ||||||| || ||||||||| ||| |||||||||||||||||||
Sbjct: 137762 ctattttcacatggttgttttccgtctattctagttttcaaattatgttcatacact 137818



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 303    cacctggttctttgcttctttcaaatct 330
              ||||||||| ||||||||||||||||||
Sbjct: 138078 cacctggttttttgcttctttcaaatct 138105



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>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0443E07
          Length = 159440

 Score =  117 bits (59), Expect = 2e-23
 Identities = 104/119 (87%)
 Strand = Plus / Plus

                                                                         
Query: 190   gttcagaggaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatca 249
             |||||||| |||||||||||||| |  ||||| || ||||| |||||||| ||||| |||
Sbjct: 91928 gttcagagaaagtatgtcaactgttgtttctttctggagcctccttcaccgtacaactca 91987

                                                                        
Query: 250   ttccattgcttcaactcacccattatggaaccttcagcagcaaaactcgccgccacctg 308
             ||||||||||||| |||||||||||| |  |||||||||||||| || |||||||||||
Sbjct: 91988 ttccattgcttcagctcacccattattgttccttcagcagcaaagcttgccgccacctg 92046



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                      
Query: 129   ctattttctcgtagttgtttgccatctattctactttccaaattatgttcatacact 185
             |||||||| | | ||||||| || ||||||||| ||| |||||||||||||||||||
Sbjct: 91856 ctattttcacatggttgttttccgtctattctagttttcaaattatgttcatacact 91912



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 303   cacctggttctttgcttctttcaaatct 330
             ||||||||| ||||||||||||||||||
Sbjct: 92172 cacctggttttttgcttctttcaaatct 92199



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>ref|NM_105085.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
            nucleotide binding AT1G64110 transcript variant
            AT1G64110.1 mRNA, complete cds
          Length = 2868

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 217  ttcttcctcgagccgccttcaccatacaaatcattccattgcttcaactcacccattatg 276
            ||||||||||| || ||||| |||||||| |||||||| ||||||||||| ||||||   
Sbjct: 2675 ttcttcctcgatcctccttctccatacaattcattccactgcttcaactctcccattccc 2616

                                                           
Query: 277  gaaccttcagcagcaaaactcgccgccacctggttctttgcttcttt 323
            |  || ||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 2615 gctccctcagccgcaaaactcgccgccacctgattcttggcttcttt 2569



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>ref|NM_179511.1| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
            nucleotide binding AT1G64110 transcript variant
            AT1G64110.2 mRNA, complete cds
          Length = 2886

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 217  ttcttcctcgagccgccttcaccatacaaatcattccattgcttcaactcacccattatg 276
            ||||||||||| || ||||| |||||||| |||||||| ||||||||||| ||||||   
Sbjct: 2693 ttcttcctcgatcctccttctccatacaattcattccactgcttcaactctcccattccc 2634

                                                           
Query: 277  gaaccttcagcagcaaaactcgccgccacctggttctttgcttcttt 323
            |  || ||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 2633 gctccctcagccgcaaaactcgccgccacctgattcttggcttcttt 2587



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>gb|AY056097.1| Arabidopsis thaliana At1g64110/F22C12_22 mRNA, complete cds
          Length = 2828

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 217  ttcttcctcgagccgccttcaccatacaaatcattccattgcttcaactcacccattatg 276
            ||||||||||| || ||||| |||||||| |||||||| ||||||||||| ||||||   
Sbjct: 2675 ttcttcctcgatcctccttctccatacaattcattccactgcttcaactctcccattccc 2616

                                                           
Query: 277  gaaccttcagcagcaaaactcgccgccacctggttctttgcttcttt 323
            |  || ||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 2615 gctccctcagccgcaaaactcgccgccacctgattcttggcttcttt 2569



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>gb|BT006360.1| Arabidopsis thaliana At1g64110/F22C12_22 gene, complete cds
          Length = 2475

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 92/107 (85%)
 Strand = Plus / Minus

                                                                        
Query: 217  ttcttcctcgagccgccttcaccatacaaatcattccattgcttcaactcacccattatg 276
            ||||||||||| || ||||| |||||||| |||||||| ||||||||||| ||||||   
Sbjct: 2450 ttcttcctcgatcctccttctccatacaattcattccactgcttcaactctcccattccc 2391

                                                           
Query: 277  gaaccttcagcagcaaaactcgccgccacctggttctttgcttcttt 323
            |  || ||||| |||||||||||||||||||| ||||| ||||||||
Sbjct: 2390 gctccctcagccgcaaaactcgccgccacctgattcttggcttcttt 2344



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>gb|AC007764.2|AC007764 Genomic sequence for Arabidopsis thaliana BAC F22C12 from chromosome I,
             complete sequence
          Length = 111222

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                         
Query: 217   ttcttcctcgagccgccttcaccatacaaatcattccattgcttcaactcacccattatg 276
             ||||||||||| || ||||| |||||||| |||||||| ||||||||||| ||||||   
Sbjct: 53982 ttcttcctcgatcctccttctccatacaattcattccactgcttcaactctcccattccc 53923

                                             
Query: 277   gaaccttcagcagcaaaactcgccgccacctg 308
             |  || ||||| ||||||||||||||||||||
Sbjct: 53922 gctccctcagccgcaaaactcgccgccacctg 53891



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>dbj|AB009055.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC20
          Length = 81575

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                         
Query: 191   ttcagaggaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatcat 250
             |||| |||||||| || | ||| ||||| ||||| ||||| ||||| |||||||||||||
Sbjct: 39210 ttcaaaggaagtaagtgagctgttcctttttccttgagcctccttctccatacaaatcat 39269

                       
Query: 251   tccattgctt 260
             ||||||||||
Sbjct: 39270 tccattgctt 39279



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>gb|AC148655.4| Medicago truncatula clone mth2-61c11, complete sequence
          Length = 89884

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                         
Query: 217   ttcttcctcgagccgccttcaccatacaaatcattccattgcttcaactcacccattatg 276
             |||||||| || || ||||| ||||||||||||||||||| |||||||     |||||| 
Sbjct: 76899 ttcttccttgaacctccttctccatacaaatcattccattccttcaacctggtcattatt 76958

                                 
Query: 277   gaaccttcagcagcaaaact 296
             || ||||| |||||||||||
Sbjct: 76959 gatccttctgcagcaaaact 76978



 Score = 46.1 bits (23), Expect = 0.071
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 217   ttcttcctcgagccgccttcaccatacaaatcattccattgct 259
             |||||||| || || ||||| |||||||||| |||||||||||
Sbjct: 85833 ttcttccttgaacctccttctccatacaaattattccattgct 85875



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>ref|NM_118938.1| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
            nucleotide binding AT4G28000 mRNA, complete cds
          Length = 2181

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 214  tccttcttcctcgagccgccttcaccatacaaatcattccattgctt 260
            ||||| ||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 2159 tcctttttcctggagcctccttctccatacaaatcattccactgctt 2113



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>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68
          Length = 199749

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 214   tccttcttcctcgagccgccttcaccatacaaatcattccattgctt 260
             ||||| ||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 44741 tcctttttcctggagcctccttctccatacaaatcattccactgctt 44695



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>emb|AL035524.1|ATT13J8 Arabidopsis thaliana DNA chromosome 4, BAC clone T13J8 (ESSAII project)
          Length = 83693

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 214   tccttcttcctcgagccgccttcaccatacaaatcattccattgctt 260
             ||||| ||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct: 39605 tcctttttcctggagcctccttctccatacaaatcattccactgctt 39559



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>ref|NM_116481.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
            nucleotide binding AT4G02480 mRNA, complete cds
          Length = 4287

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 216  cttcttcctcgagccgccttcaccatacaaatcattccattgct 259
            |||||||||||| || |||||||||||||  || ||||||||||
Sbjct: 3940 cttcttcctcgatcctccttcaccatacagctcgttccattgct 3897



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>gb|AY090948.1| Arabidopsis thaliana unknown protein (At4g02480) mRNA, complete cds
          Length = 4184

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 216  cttcttcctcgagccgccttcaccatacaaatcattccattgct 259
            |||||||||||| || |||||||||||||  || ||||||||||
Sbjct: 3902 cttcttcctcgatcctccttcaccatacagctcgttccattgct 3859



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>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
          Length = 194892

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                          
Query: 216    cttcttcctcgagccgccttcaccatacaaatcattccattgct 259
              |||||||||||| || |||||||||||||  || ||||||||||
Sbjct: 117756 cttcttcctcgatcctccttcaccatacagctcgttccattgct 117799



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>gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8
          Length = 94536

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 216   cttcttcctcgagccgccttcaccatacaaatcattccattgct 259
             |||||||||||| || |||||||||||||  || ||||||||||
Sbjct: 28858 cttcttcctcgatcctccttcaccatacagctcgttccattgct 28815



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>gb|AC150980.20| Medicago truncatula clone mth2-165j9, complete sequence
          Length = 119548

 Score = 46.1 bits (23), Expect = 0.071
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 217    ttcttcctcgagccgccttcaccatacaaatcattccattgct 259
              |||||||| || || ||||| |||||||||| |||||||||||
Sbjct: 119028 ttcttccttgaacctccttctccatacaaattattccattgct 118986



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>ref|XM_475967.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2568

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 198  gaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatcattccattg 257
            |||||| |||| ||||| ||||||||| ||||| ||||| || || |  || ||||||||
Sbjct: 2562 gaagtacgtcagctgctgcttcttcctggagccaccttctccgtataggtcgttccattg 2503

                      
Query: 258  cttcaactca 267
            ||||| ||||
Sbjct: 2502 cttcagctca 2493



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>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0009C07, complete sequence
          Length = 148731

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                         
Query: 198   gaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatcattccattg 257
             |||||| |||| ||||| ||||||||| ||||| ||||| || || |  || ||||||||
Sbjct: 27830 gaagtacgtcagctgctgcttcttcctggagccaccttctccgtataggtcgttccattg 27889

                       
Query: 258   cttcaactca 267
             ||||| ||||
Sbjct: 27890 cttcagctca 27899



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>gb|AC130726.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0508G08,
             complete sequence
          Length = 141383

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 303   cacctggttctttgcttctttcaaat 328
             |||||| |||||||||||||||||||
Sbjct: 36642 cacctgtttctttgcttctttcaaat 36617



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>emb|AL080275.20|HSDJ149L1 Human DNA sequence from clone RP1-149L1 on chromosome 6q12-13 Contains
             the 5' end of the COL9A1 gene for collagen IX alpha 1 and
             a CpG island, complete sequence
          Length = 113983

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 117   aaagtaaccggcctattttctc 138
             ||||||||||||||||||||||
Sbjct: 16890 aaagtaaccggcctattttctc 16911



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                            
Query: 198      gaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatcattccattg 257
                |||||| |||| ||||| ||||||||| ||||| ||||| || || |  || ||||||||
Sbjct: 28873537 gaagtacgtcagctgctgcttcttcctggagccaccttctccgtataggtcgttccattg 28873596

                          
Query: 258      cttcaactca 267
                ||||| ||||
Sbjct: 28873597 cttcagctca 28873606



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 303      cacctggttctttgcttctttcaaat 328
                |||||| |||||||||||||||||||
Sbjct: 12876096 cacctgtttctttgcttctttcaaat 12876071



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>dbj|AK072537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N21, full
            insert sequence
          Length = 2989

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 198  gaagtatgtcaactgctccttcttcctcgagccgccttcaccatacaaatcattccattg 257
            |||||| |||| ||||| ||||||||| ||||| ||||| || || |  || ||||||||
Sbjct: 2688 gaagtacgtcagctgctgcttcttcctggagccaccttctccgtataggtcgttccattg 2629

                      
Query: 258  cttcaactca 267
            ||||| ||||
Sbjct: 2628 cttcagctca 2619



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>dbj|AK065926.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050P04, full
            insert sequence
          Length = 2262

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 303  cacctggttctttgcttctttcaaat 328
            |||||| |||||||||||||||||||
Sbjct: 1634 cacctgtttctttgcttctttcaaat 1609



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>gb|AC148527.20| Medicago truncatula clone mth2-49g13, complete sequence
          Length = 107439

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 232    ccttcaccatacaaatcattccattgcttcaac 264
              ||||| ||||||||||||||||| | |||||||
Sbjct: 102386 ccttctccatacaaatcattccactccttcaac 102418



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>gb|AC005146.1| Homo sapiens 12 PAC RP1-157K6 (Roswell Park Cancer Institute Human PAC
              Library) complete sequence
          Length = 157653

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 159    ctactttccaaattatgttcatacactta 187
              |||||||||||||||| |||| |||||||
Sbjct: 126479 ctactttccaaattatattcagacactta 126507



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>ref|NM_100170.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/
            nucleotide binding AT1G02890 mRNA, complete cds
          Length = 4148

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 216  cttcttcctcgagccgccttcaccatacaaatcattccattgct 259
            ||||||||||||||| ||||| ||||| |  || ||||||||||
Sbjct: 3844 cttcttcctcgagcctccttctccatagagctcgttccattgct 3801



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>gb|AC113121.27| Mus musculus chromosome 8, clone RP23-347G12, complete sequence
          Length = 192877

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    tcaactgctccttcttcctc 225
              ||||||||||||||||||||
Sbjct: 138665 tcaactgctccttcttcctc 138684



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>gb|AC006794.3| Caenorhabditis elegans cosmid Y50D4A, complete sequence
          Length = 45292

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   tttcatgtgttttgacaaag 120
             ||||||||||||||||||||
Sbjct: 42279 tttcatgtgttttgacaaag 42298



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>gb|AC104613.2| Drosophila melanogaster clone BACR06K07, complete sequence
          Length = 152934

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    acaagtacaacaaccaaaca 64
             ||||||||||||||||||||
Sbjct: 86715 acaagtacaacaaccaaaca 86734



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>gb|AC147628.4| Mus musculus BAC clone RP24-476D20 from chromosome 14, complete
             sequence
          Length = 170642

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    ttattagtgtacaagtacaa 54
             ||||||||||||||||||||
Sbjct: 90792 ttattagtgtacaagtacaa 90773



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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 135     tctcgtagttgtttgccatctatt 158
               |||||||||||||||||| |||||
Sbjct: 1032994 tctcgtagttgtttgccaactatt 1033017



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>gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16 genomic sequence, complete
             sequence
          Length = 100239

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 216   cttcttcctcgagccgccttcaccatacaaatcattccattgct 259
             ||||||||||||||| ||||| ||||| |  || ||||||||||
Sbjct: 47081 cttcttcctcgagcctccttctccatagagctcgttccattgct 47038



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>emb|AL355604.11| Human DNA sequence from clone RP11-404E6 on chromosome 9 Contains a
             pseudogene similar to part of dipeptidylpeptidase 3
             (DPP3), complete sequence
          Length = 183010

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 154   ctattctactttccaaattatgtt 177
             ||||||| ||||||||||||||||
Sbjct: 61083 ctattctcctttccaaattatgtt 61106



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>gb|AC164524.5| Mus musculus  BAC RP23-438F8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 180937

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      aaaggatctgctctgctctg 26
              ||||||||||||||||||||
Sbjct: 143079 aaaggatctgctctgctctg 143098



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>gb|AC013432.4| Drosophila melanogaster, chromosome X, region 15F-15F, BAC clone
             BACR01K05, complete sequence
          Length = 162761

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   tattctactttccaaattat 174
             ||||||||||||||||||||
Sbjct: 47451 tattctactttccaaattat 47470



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>gb|DP000053.1| Oryctolagus cuniculus target 126 genomic scaffold
          Length = 470930

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    tctttgcttctttcaaatct 330
              ||||||||||||||||||||
Sbjct: 300531 tctttgcttctttcaaatct 300550



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>gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosome 1, complete sequence
          Length = 194368

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tcaactgctccttcttcctc 225
             ||||||||||||||||||||
Sbjct: 69390 tcaactgctccttcttcctc 69409



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>gb|AC155657.8| Mus musculus 6 BAC RP24-113L15 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 159299

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      aaaggatctgctctgctctg 26
              ||||||||||||||||||||
Sbjct: 143905 aaaggatctgctctgctctg 143886



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>gb|AC140366.2| Mus musculus BAC clone RP24-225H21 from chromosome 7, complete sequence
          Length = 145270

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 237   accatacaaatcattccattgctt 260
             ||||||||| ||||||||||||||
Sbjct: 32742 accatacaagtcattccattgctt 32765



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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 135     tctcgtagttgtttgccatctatt 158
               |||||||||||||||||| |||||
Sbjct: 3714131 tctcgtagttgtttgccaactatt 3714108



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>emb|AL929331.15| Zebrafish DNA sequence from clone DKEY-16O9, complete sequence
          Length = 221062

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   tactttccaaattatgttca 179
             ||||||||||||||||||||
Sbjct: 64240 tactttccaaattatgttca 64259



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>gb|AC140070.3| Mus musculus BAC clone RP24-161L16 from 9, complete sequence
          Length = 168604

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ctctgcagattcattattag 41
             ||||||||||||||||||||
Sbjct: 98501 ctctgcagattcattattag 98520



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>gb|AY109177.1| Zea mays PCO089905 mRNA sequence
          Length = 1098

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 218 tcttcctcgagccgccttcaccatacaaatcattccattg 257
           |||||||||| ||||||||||| ||||  || ||||||||
Sbjct: 421 tcttcctcgacccgccttcaccgtacaggtcgttccattg 382



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>gb|AE003609.4| Drosophila melanogaster chromosome 2L, section 18 of 83 of the complete
             sequence
          Length = 319287

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    acaagtacaacaaccaaaca 64
             ||||||||||||||||||||
Sbjct: 29757 acaagtacaacaaccaaaca 29738



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>gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 of 74 of the complete
              sequence
          Length = 314205

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    tattctactttccaaattat 174
              ||||||||||||||||||||
Sbjct: 118948 tattctactttccaaattat 118929



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>gb|AC005750.1|AC005750 Drosophila melanogaster DNA sequence (P1s DS03979 (D283) and DS01272
             (D284)), complete sequence
          Length = 102516

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    acaagtacaacaaccaaaca 64
             ||||||||||||||||||||
Sbjct: 34516 acaagtacaacaaccaaaca 34535



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>gb|L77738.1|SYNAEVRV Retroviral vector leader sequence
          Length = 557

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 tcttcctcgagccgccttca 237
           ||||||||||||||||||||
Sbjct: 473 tcttcctcgagccgccttca 454


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,538,449
Number of Sequences: 3902068
Number of extensions: 3538449
Number of successful extensions: 98440
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 98245
Number of HSP's gapped (non-prelim): 206
length of query: 332
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 310
effective length of database: 17,147,199,772
effective search space: 5315631929320
effective search space used: 5315631929320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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