Clone Name | rbastl14a10 |
---|---|
Clone Library Name | barley_pub |
>gb|BC072681.1| Homo sapiens zinc finger, A20 domain containing 1, mRNA (cDNA clone MGC:87939 IMAGE:6170513), complete cds Length = 3618 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 atcaaaattcaggcctccaccc 322 |||||||||||||||||||||| Sbjct: 247 atcaaaattcaggcctccaccc 226
>gb|AC073347.3| Homo sapiens BAC clone RP11-775L16 from 7, complete sequence Length = 197144 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 66 agctgtttcacacacacaaatcaagg 91 ||||||| |||||||||||||||||| Sbjct: 45893 agctgttacacacacacaaatcaagg 45868
>gb|AC159312.2| Mus musculus BAC clone RP23-156N21 from chromosome 12, complete sequence Length = 205080 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 caagagcagcttatccattcagaca 288 |||||||||||| |||||||||||| Sbjct: 183951 caagagcagcttgtccattcagaca 183975
>ref|NM_020205.1| Homo sapiens zinc finger, A20 domain containing 1 (ZA20D1), mRNA Length = 3159 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 301 atcaaaattcaggcctccacc 321 ||||||||||||||||||||| Sbjct: 152 atcaaaattcaggcctccacc 132
>gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene cluster, complete sequence Length = 99318 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 attgttggagcacattgataa 192 ||||||||||||||||||||| Sbjct: 17511 attgttggagcacattgataa 17531
>gb|AC117612.9| Mus musculus chromosome 19, clone RP23-103G8, complete sequence Length = 186038 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 ttcttcagcagcataaccagc 346 ||||||||||||||||||||| Sbjct: 108429 ttcttcagcagcataaccagc 108409
>ref|XM_809815.1| Trypanosoma cruzi strain CL Brener lipase domain protein (Tc00.1047053509999.60) partial mRNA Length = 3831 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 cagcagcataaccagcacaaa 351 ||||||||||||||||||||| Sbjct: 2825 cagcagcataaccagcacaaa 2805
>gb|AY212810.1| Laboulbeniopsis termitarius isolate DAH 18 18S ribosomal RNA gene, partial sequence Length = 998 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 ttcataataactgaacttagc 68 ||||||||||||||||||||| Sbjct: 173 ttcataataactgaacttagc 193
>emb|AL590487.20| Human DNA sequence from clone RP11-212K13 on chromosome 1 Contains the 5' end of the SF3B4 gene for splicing factor 3b, subunit 4, 49kDa, the gene for cisplatin resistance associated (CRA) and the 3' end of the ZA20D1 gene for zinc finger, A20 domain containing 1, complete sequence Length = 93586 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 301 atcaaaattcaggcctccacc 321 ||||||||||||||||||||| Sbjct: 52696 atcaaaattcaggcctccacc 52716
>emb|AL139823.11| Human DNA sequence from clone RP4-703E10 on chromosome 1p36.32-36.33, complete sequence Length = 118994 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 235 agatgcaaaatccaacagggagaag 259 |||||||| |||||||||||||||| Sbjct: 73512 agatgcaatatccaacagggagaag 73488
>gb|AC116559.30| Papio anubis clone rp41-339c10, complete sequence Length = 162030 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 cagcacaaatagtacctctta 363 ||||||||||||||||||||| Sbjct: 121693 cagcacaaatagtacctctta 121673
>gb|AC116558.21| Papio anubis clone rp41-273g19, complete sequence Length = 188182 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 cagcacaaatagtacctctta 363 ||||||||||||||||||||| Sbjct: 37121 cagcacaaatagtacctctta 37141
>dbj|AK138680.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430002N19 product:Similar to mannose-P-dolichol utilization defect 1 protein homolog [Mus musculus], full insert sequence Length = 2586 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 caagagcagcttatccattcagaca 288 |||||||||||| |||||||||||| Sbjct: 1471 caagagcagcttgtccattcagaca 1495
>dbj|AK132438.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4731418D03 product:unclassifiable, full insert sequence Length = 2417 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 ttcttcagcagcataaccagc 346 ||||||||||||||||||||| Sbjct: 1716 ttcttcagcagcataaccagc 1736
>gb|AC155305.2| Mus musculus BAC clone RP24-182I21 from 12, complete sequence Length = 172724 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 264 caagagcagcttatccattcagaca 288 |||||||||||| |||||||||||| Sbjct: 171443 caagagcagcttgtccattcagaca 171419
>emb|AJ293573.1|HSA293573 Homo sapiens mRNA for zinc finger protein Cezanne (CEZANNE gene) Length = 3159 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 301 atcaaaattcaggcctccacc 321 ||||||||||||||||||||| Sbjct: 152 atcaaaattcaggcctccacc 132
>gb|AC147597.2| Gallus gallus BAC clone CH261-100D18 from chromosome unknown, complete sequence Length = 168372 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 419 ctccctttagatagttataaa 439 ||||||||||||||||||||| Sbjct: 74169 ctccctttagatagttataaa 74149
>gb|AC164079.11| Mus musculus chromosome 1, clone RP23-15E12, complete sequence Length = 215135 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tggagcacattgataatatg 196 |||||||||||||||||||| Sbjct: 72646 tggagcacattgataatatg 72665
>gb|AC161181.3| Mus musculus chromosome 3, clone RP23-10I23, complete sequence Length = 218083 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 tttcacacacacaaatcaaggatg 94 ||||||| |||||||||||||||| Sbjct: 194255 tttcacatacacaaatcaaggatg 194232
>gb|AC104911.10| Mus musculus chromosome 3, clone RP23-427B4, complete sequence Length = 190932 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 tttcacacacacaaatcaaggatg 94 ||||||| |||||||||||||||| Sbjct: 188227 tttcacatacacaaatcaaggatg 188250
>emb|CR855911.1| Paramecium tetraurelia macronuclear, putative gene for Sec1, isoform 3, complete gene Length = 2300 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 agcttctttcaattattatt 174 |||||||||||||||||||| Sbjct: 709 agcttctttcaattattatt 690
>gb|AC108482.1| Homo sapiens chromosome 5 clone RP11-107N7, complete sequence Length = 166716 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 catttcataataactgaact 64 |||||||||||||||||||| Sbjct: 86173 catttcataataactgaact 86192
>dbj|AK049712.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530043P04 product:unclassifiable, full insert sequence Length = 3977 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 tttcacacacacaaatcaaggatg 94 ||||||| |||||||||||||||| Sbjct: 1674 tttcacatacacaaatcaaggatg 1651
>gb|AC084513.1|CBRG17E20 Caenorhabditis briggsae cosmid G17E20, complete sequence Length = 13328 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 cctccaccccatttcttcag 333 |||||||||||||||||||| Sbjct: 11283 cctccaccccatttcttcag 11264
>gb|AC084498.1|CBRG12J19 Caenorhabditis briggsae cosmid G12J19, complete sequence Length = 30720 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 cctccaccccatttcttcag 333 |||||||||||||||||||| Sbjct: 22939 cctccaccccatttcttcag 22958
>emb|AL670778.15| Mouse DNA sequence from clone RP23-234A24 on chromosome X, complete sequence Length = 201720 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gctgtttcacacacacaaat 86 |||||||||||||||||||| Sbjct: 37070 gctgtttcacacacacaaat 37089
>emb|AL824702.9| Mouse DNA sequence from clone RP23-466L3 on chromosome 4, complete sequence Length = 90122 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 254 gagaagacagcaagagcagc 273 |||||||||||||||||||| Sbjct: 18251 gagaagacagcaagagcagc 18232 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,555,596 Number of Sequences: 3902068 Number of extensions: 5555596 Number of successful extensions: 148295 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 148245 Number of HSP's gapped (non-prelim): 50 length of query: 471 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 449 effective length of database: 17,147,199,772 effective search space: 7699092697628 effective search space used: 7699092697628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)