ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl14a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC072681.1| Homo sapiens zinc finger, A20 domain containing 1... 44 0.41
2gb|AC073347.3| Homo sapiens BAC clone RP11-775L16 from 7, comple... 44 0.41
3gb|AC159312.2| Mus musculus BAC clone RP23-156N21 from chromosom... 42 1.6
4ref|NM_020205.1| Homo sapiens zinc finger, A20 domain containing... 42 1.6
5gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene ... 42 1.6
6gb|AC117612.9| Mus musculus chromosome 19, clone RP23-103G8, com... 42 1.6
7ref|XM_809815.1| Trypanosoma cruzi strain CL Brener lipase domai... 42 1.6
8gb|AY212810.1| Laboulbeniopsis termitarius isolate DAH 18 18S ri... 42 1.6
9emb|AL590487.20| Human DNA sequence from clone RP11-212K13 on ch... 42 1.6
10emb|AL139823.11| Human DNA sequence from clone RP4-703E10 on chr... 42 1.6
11gb|AC116559.30| Papio anubis clone rp41-339c10, complete sequence 42 1.6
12gb|AC116558.21| Papio anubis clone rp41-273g19, complete sequence 42 1.6
13dbj|AK138680.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 42 1.6
14dbj|AK132438.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 42 1.6
15gb|AC155305.2| Mus musculus BAC clone RP24-182I21 from 12, compl... 42 1.6
16emb|AJ293573.1|HSA293573 Homo sapiens mRNA for zinc finger prote... 42 1.6
17gb|AC147597.2| Gallus gallus BAC clone CH261-100D18 from chromos... 42 1.6
18gb|AC164079.11| Mus musculus chromosome 1, clone RP23-15E12, com... 40 6.4
19gb|AC161181.3| Mus musculus chromosome 3, clone RP23-10I23, comp... 40 6.4
20gb|AC104911.10| Mus musculus chromosome 3, clone RP23-427B4, com... 40 6.4
21emb|CR855911.1| Paramecium tetraurelia macronuclear, putative ge... 40 6.4
22gb|AC108482.1| Homo sapiens chromosome 5 clone RP11-107N7, compl... 40 6.4
23dbj|AK049712.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 40 6.4
24gb|AC084513.1|CBRG17E20 Caenorhabditis briggsae cosmid G17E20, c... 40 6.4
25gb|AC084498.1|CBRG12J19 Caenorhabditis briggsae cosmid G12J19, c... 40 6.4
26emb|AL670778.15| Mouse DNA sequence from clone RP23-234A24 on ch... 40 6.4
27emb|AL824702.9| Mouse DNA sequence from clone RP23-466L3 on chro... 40 6.4

>gb|BC072681.1| Homo sapiens zinc finger, A20 domain containing 1, mRNA (cDNA clone
           MGC:87939 IMAGE:6170513), complete cds
          Length = 3618

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 301 atcaaaattcaggcctccaccc 322
           ||||||||||||||||||||||
Sbjct: 247 atcaaaattcaggcctccaccc 226



to top

>gb|AC073347.3| Homo sapiens BAC clone RP11-775L16 from 7, complete sequence
          Length = 197144

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 66    agctgtttcacacacacaaatcaagg 91
             ||||||| ||||||||||||||||||
Sbjct: 45893 agctgttacacacacacaaatcaagg 45868



to top

>gb|AC159312.2| Mus musculus BAC clone RP23-156N21 from chromosome 12, complete sequence
          Length = 205080

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 264    caagagcagcttatccattcagaca 288
              |||||||||||| ||||||||||||
Sbjct: 183951 caagagcagcttgtccattcagaca 183975



to top

>ref|NM_020205.1| Homo sapiens zinc finger, A20 domain containing 1 (ZA20D1), mRNA
          Length = 3159

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 301 atcaaaattcaggcctccacc 321
           |||||||||||||||||||||
Sbjct: 152 atcaaaattcaggcctccacc 132



to top

>gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene cluster, complete
             sequence
          Length = 99318

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 172   attgttggagcacattgataa 192
             |||||||||||||||||||||
Sbjct: 17511 attgttggagcacattgataa 17531



to top

>gb|AC117612.9| Mus musculus chromosome 19, clone RP23-103G8, complete sequence
          Length = 186038

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 326    ttcttcagcagcataaccagc 346
              |||||||||||||||||||||
Sbjct: 108429 ttcttcagcagcataaccagc 108409



to top

>ref|XM_809815.1| Trypanosoma cruzi strain CL Brener lipase domain protein
            (Tc00.1047053509999.60) partial mRNA
          Length = 3831

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 331  cagcagcataaccagcacaaa 351
            |||||||||||||||||||||
Sbjct: 2825 cagcagcataaccagcacaaa 2805



to top

>gb|AY212810.1| Laboulbeniopsis termitarius isolate DAH 18 18S ribosomal RNA gene,
           partial sequence
          Length = 998

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 48  ttcataataactgaacttagc 68
           |||||||||||||||||||||
Sbjct: 173 ttcataataactgaacttagc 193



to top

>emb|AL590487.20| Human DNA sequence from clone RP11-212K13 on chromosome 1 Contains the
             5' end of the SF3B4 gene for splicing factor 3b, subunit
             4, 49kDa, the gene for cisplatin resistance associated
             (CRA) and the 3' end of the ZA20D1 gene for zinc finger,
             A20 domain containing 1, complete sequence
          Length = 93586

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 301   atcaaaattcaggcctccacc 321
             |||||||||||||||||||||
Sbjct: 52696 atcaaaattcaggcctccacc 52716



to top

>emb|AL139823.11| Human DNA sequence from clone RP4-703E10 on chromosome 1p36.32-36.33,
             complete sequence
          Length = 118994

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 235   agatgcaaaatccaacagggagaag 259
             |||||||| ||||||||||||||||
Sbjct: 73512 agatgcaatatccaacagggagaag 73488



to top

>gb|AC116559.30| Papio anubis clone rp41-339c10, complete sequence
          Length = 162030

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 343    cagcacaaatagtacctctta 363
              |||||||||||||||||||||
Sbjct: 121693 cagcacaaatagtacctctta 121673



to top

>gb|AC116558.21| Papio anubis clone rp41-273g19, complete sequence
          Length = 188182

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 343   cagcacaaatagtacctctta 363
             |||||||||||||||||||||
Sbjct: 37121 cagcacaaatagtacctctta 37141



to top

>dbj|AK138680.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A430002N19 product:Similar to
            mannose-P-dolichol utilization defect 1 protein homolog
            [Mus musculus], full insert sequence
          Length = 2586

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 264  caagagcagcttatccattcagaca 288
            |||||||||||| ||||||||||||
Sbjct: 1471 caagagcagcttgtccattcagaca 1495



to top

>dbj|AK132438.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4731418D03 product:unclassifiable, full
            insert sequence
          Length = 2417

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 326  ttcttcagcagcataaccagc 346
            |||||||||||||||||||||
Sbjct: 1716 ttcttcagcagcataaccagc 1736



to top

>gb|AC155305.2| Mus musculus BAC clone RP24-182I21 from 12, complete sequence
          Length = 172724

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 264    caagagcagcttatccattcagaca 288
              |||||||||||| ||||||||||||
Sbjct: 171443 caagagcagcttgtccattcagaca 171419



to top

>emb|AJ293573.1|HSA293573 Homo sapiens mRNA for zinc finger protein Cezanne (CEZANNE gene)
          Length = 3159

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 301 atcaaaattcaggcctccacc 321
           |||||||||||||||||||||
Sbjct: 152 atcaaaattcaggcctccacc 132



to top

>gb|AC147597.2| Gallus gallus BAC clone CH261-100D18 from chromosome unknown, complete
             sequence
          Length = 168372

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 419   ctccctttagatagttataaa 439
             |||||||||||||||||||||
Sbjct: 74169 ctccctttagatagttataaa 74149



to top

>gb|AC164079.11| Mus musculus chromosome 1, clone RP23-15E12, complete sequence
          Length = 215135

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 177   tggagcacattgataatatg 196
             ||||||||||||||||||||
Sbjct: 72646 tggagcacattgataatatg 72665



to top

>gb|AC161181.3| Mus musculus chromosome 3, clone RP23-10I23, complete sequence
          Length = 218083

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 71     tttcacacacacaaatcaaggatg 94
              ||||||| ||||||||||||||||
Sbjct: 194255 tttcacatacacaaatcaaggatg 194232



to top

>gb|AC104911.10| Mus musculus chromosome 3, clone RP23-427B4, complete sequence
          Length = 190932

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 71     tttcacacacacaaatcaaggatg 94
              ||||||| ||||||||||||||||
Sbjct: 188227 tttcacatacacaaatcaaggatg 188250



to top

>emb|CR855911.1| Paramecium tetraurelia macronuclear, putative gene for Sec1,
           isoform 3, complete gene
          Length = 2300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 155 agcttctttcaattattatt 174
           ||||||||||||||||||||
Sbjct: 709 agcttctttcaattattatt 690



to top

>gb|AC108482.1| Homo sapiens chromosome 5 clone RP11-107N7, complete sequence
          Length = 166716

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    catttcataataactgaact 64
             ||||||||||||||||||||
Sbjct: 86173 catttcataataactgaact 86192



to top

>dbj|AK049712.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
            enriched library, clone:C530043P04
            product:unclassifiable, full insert sequence
          Length = 3977

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 71   tttcacacacacaaatcaaggatg 94
            ||||||| ||||||||||||||||
Sbjct: 1674 tttcacatacacaaatcaaggatg 1651



to top

>gb|AC084513.1|CBRG17E20 Caenorhabditis briggsae cosmid G17E20, complete sequence
          Length = 13328

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   cctccaccccatttcttcag 333
             ||||||||||||||||||||
Sbjct: 11283 cctccaccccatttcttcag 11264



to top

>gb|AC084498.1|CBRG12J19 Caenorhabditis briggsae cosmid G12J19, complete sequence
          Length = 30720

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   cctccaccccatttcttcag 333
             ||||||||||||||||||||
Sbjct: 22939 cctccaccccatttcttcag 22958



to top

>emb|AL670778.15| Mouse DNA sequence from clone RP23-234A24 on chromosome X, complete
             sequence
          Length = 201720

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    gctgtttcacacacacaaat 86
             ||||||||||||||||||||
Sbjct: 37070 gctgtttcacacacacaaat 37089



to top

>emb|AL824702.9| Mouse DNA sequence from clone RP23-466L3 on chromosome 4, complete
             sequence
          Length = 90122

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   gagaagacagcaagagcagc 273
             ||||||||||||||||||||
Sbjct: 18251 gagaagacagcaagagcagc 18232


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,555,596
Number of Sequences: 3902068
Number of extensions: 5555596
Number of successful extensions: 148295
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148245
Number of HSP's gapped (non-prelim): 50
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top