ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl14a08 |
|---|---|
| Clone Library Name | barley_pub |
>ZN615_HUMAN (Q8N8J6) Zinc finger protein 615| Length = 555 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = -2 Query: 398 KNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGVCS-CGDYWXXXXXXXXXXKVH 222 +N VC +C AF +S+ +DH+ + K VCS CG + + H Sbjct: 25 ENAHVCSECGKAFLKLSQFIDHQRVHTGE------KPHVCSMCGKAFSRKSRLMDHQRTH 78 Query: 221 SNWFLYTECTD 189 + Y ECT+ Sbjct: 79 TELKHY-ECTE 88
>POLG_TBEVW (P14336) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3414 Score = 29.3 bits (64), Expect = 2.3 Identities = 12/27 (44%), Positives = 21/27 (77%) Frame = +1 Query: 22 LYFSNEISITNEDVRKYKHSAGDAS*E 102 LYF N+++ T +D+ +++HSAG +S E Sbjct: 3190 LYFLNDMAKTRKDIGEWEHSAGFSSWE 3216
>ZFP92_MOUSE (Q62396) Zinc finger protein 92 (Zfp-92)| Length = 488 Score = 29.3 bits (64), Expect = 2.3 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Frame = -2 Query: 383 CGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGVC-SCGDYWXXXXXXXXXXKVHSNW-- 213 CG+C FT S +V H++I F VC CG + ++HS Sbjct: 199 CGECGKTFTRSSNLVKHQVIHSSEMPF------VCRMCGKVFRRSFALLEHTRIHSGERP 252 Query: 212 FLYTEC 195 F TEC Sbjct: 253 FECTEC 258
>POLG_TBEVH (Q01299) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3414 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/27 (44%), Positives = 21/27 (77%) Frame = +1 Query: 22 LYFSNEISITNEDVRKYKHSAGDAS*E 102 LYF N+++ T +D+ +++HSAG +S E Sbjct: 3190 LYFLNDMAKTRKDIGEWEHSAGLSSWE 3216
>ZFP62_MOUSE (Q8C827) Zinc finger protein 62 homolog (Zfp-62) (ZT3)| Length = 914 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/32 (34%), Positives = 18/32 (56%) Frame = -2 Query: 398 KNLRVCGDCHSAFTYISKIVDHEIIVRDSSRF 303 K L C +C +F Y S++V H+I+ R+ Sbjct: 128 KKLHKCDECGKSFKYNSRLVQHKIMHTGEKRY 159
>SRK1_SCHPO (O94547) Serine/threonine-protein kinase srk1 (EC 2.7.11.1)| (Sty1-regulated kinase 1) Length = 580 Score = 28.9 bits (63), Expect = 3.1 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 8/87 (9%) Frame = +3 Query: 111 NISKEIVIARR----NY*TLQRLISNKEWYISTFCVQKPIGMHFQFM----LQPKKSSPI 266 NI KE+ I RR N L I E+Y + + Q + S + Sbjct: 177 NILKEVQIMRRVKHPNIIQLLEFIQTPEYYYLVLELADGGELFHQIVRLTYFSEDLSRHV 236 Query: 267 VTTRAHAILKMMEATGVPHNDLMINNL 347 +T AHAI + E GV H D+ NL Sbjct: 237 ITQVAHAIRYLHEDCGVVHRDIKPENL 263
>MATK_HUMLU (Q95BX9) Maturase K (Intron maturase)| Length = 507 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 129 VIARRNY*TLQRLISNKEWYISTFCV 206 +I R Y TL+RL + WY+ FC+ Sbjct: 475 LIFPRTYSTLRRLYKGRIWYLDIFCI 500
>MATK_CANSA (Q95BY0) Maturase K (Intron maturase)| Length = 507 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 129 VIARRNY*TLQRLISNKEWYISTFCV 206 +I R Y TL+RL + WY+ FC+ Sbjct: 475 LIFPRTYSTLRRLYKGRIWYLDIFCI 500
>TAGF_BACSU (P13485) CDP-glycerol:poly(glycerophosphate)| glycerophosphotransferase (EC 2.7.8.12) (Polyglycerol phosphate polymerase) (CGPTase) (Major teichoic acid biosynthesis protein F) Length = 746 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 225 HFQFMLQPKKSSPIVTTRAHAILKMMEATGVPHNDLMINNL*DVRESTVAI 377 ++ +++ P S + TRA K M +G P ND + N D E T+++ Sbjct: 508 NWDYLISPNGYSTEIFTRAFQFNKTMIESGYPRNDFLHN---DNNEETISL 555
>RL31_GLOVI (Q7ND16) 50S ribosomal protein L31| Length = 74 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 395 NLRVCGDCHSAFTYISKIVDHE 330 N+ +C +CH FT KIVD E Sbjct: 34 NVEICANCHPFFTGQQKIVDAE 55
>ZN553_HUMAN (Q96MX3) Zinc finger protein 553| Length = 618 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -2 Query: 386 VCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGVCSCG 270 VCG+C +F +S +V H+ R + +K GVC G Sbjct: 113 VCGECGKSFRQMSDLVKHQ---RTHTGEKPYKCGVCGKG 148
>MATK_ULMPA (Q95BX6) Maturase K (Intron maturase)| Length = 505 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +3 Query: 141 RNY*TLQRLISNKEWYISTFCV 206 R Y TL+RL + WY+ FC+ Sbjct: 477 RTYYTLRRLYRGRIWYLDIFCI 498
>ZN553_MOUSE (Q3US17) Zinc finger protein 553| Length = 591 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -2 Query: 386 VCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGVCSCG 270 VCG+C +F +S +V H+ R + +K GVC G Sbjct: 84 VCGECGKSFRQMSDLVKHQ---RTHTGEKPYKCGVCGKG 119
>ZN707_HUMAN (Q96C28) Zinc finger protein 707| Length = 369 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Frame = -2 Query: 383 CGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGVCSCGDYWXXXXXXXXXXKVHSNWFLY 204 CGDC AF S ++ H+++ F+ CG + +VHS Y Sbjct: 260 CGDCGKAFKQKSNLLRHQLVHTGERPFY-----CADCGKAFRTKENLSHHQRVHSGEKPY 314 Query: 203 T--EC 195 T EC Sbjct: 315 TCAEC 319
>TRUD_CAMJR (Q5HSX3) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine| isomerase D) (tRNA pseudouridylate synthase D) Length = 372 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +3 Query: 219 GMHFQFMLQPKKSSPIVTTRAHAILKMMEATGVPHNDLMINNL 347 G FQ++ PKK ++ +H LK++E T + N L I +L Sbjct: 88 GSTFQYLSMPKKFESFLSNFSHPKLKILE-TFIHENKLRIGHL 129
>RL31_SALTY (P66191) 50S ribosomal protein L31| Length = 70 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 395 NLRVCGDCHSAFTYISKIVD 336 NL VCG CH FT ++VD Sbjct: 33 NLDVCGKCHPFFTGKQRVVD 52
>RL31_SALTI (P66192) 50S ribosomal protein L31| Length = 70 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 395 NLRVCGDCHSAFTYISKIVD 336 NL VCG CH FT ++VD Sbjct: 33 NLDVCGKCHPFFTGKQRVVD 52
>RL31_SALPA (Q5PK51) 50S ribosomal protein L31| Length = 70 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 395 NLRVCGDCHSAFTYISKIVD 336 NL VCG CH FT ++VD Sbjct: 33 NLDVCGKCHPFFTGKQRVVD 52
>RL31_SALCH (Q57HC1) 50S ribosomal protein L31| Length = 70 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -2 Query: 395 NLRVCGDCHSAFTYISKIVD 336 NL VCG CH FT ++VD Sbjct: 33 NLDVCGKCHPFFTGKQRVVD 52
>ZN599_HUMAN (Q96NL3) Zinc finger protein 599| Length = 588 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -2 Query: 398 KNLRVCGDCHSAFTYISKIVDHEI 327 K L CG+C AFT+ S + H + Sbjct: 336 KKLYECGECGKAFTHRSTFIQHNV 359
>RL31_PASMU (Q9CLR7) 50S ribosomal protein L31| Length = 70 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -2 Query: 395 NLRVCGDCHSAFTYISKIVD 336 NL VCG+CH +T ++VD Sbjct: 33 NLDVCGNCHPFYTGKQRVVD 52
>RL31_MANSM (Q65VF5) 50S ribosomal protein L31| Length = 71 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -2 Query: 395 NLRVCGDCHSAFTYISKIVD 336 NL VCG+CH +T ++VD Sbjct: 33 NLDVCGNCHPFYTGKQRVVD 52
>RL31_HAEIN (P44367) 50S ribosomal protein L31| Length = 70 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -2 Query: 395 NLRVCGDCHSAFTYISKIVD 336 NL VCG+CH +T ++VD Sbjct: 33 NLDVCGNCHPFYTGKQRVVD 52
>RL31_HAEDU (Q59450) 50S ribosomal protein L31| Length = 70 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -2 Query: 395 NLRVCGDCHSAFTYISKIVD 336 NL VCG+CH +T ++VD Sbjct: 33 NLDVCGNCHPFYTGKQRVVD 52
>CYAA_SCHPO (P14605) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)| (Adenylyl cyclase) Length = 1692 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = -3 Query: 382 VVIATVLSRTSQRLLIMRSLCGTPVASI 299 V + L+RT +L IMR+L G PV+S+ Sbjct: 771 VATSKKLTRTISQLKIMRTLSGNPVSSL 798
>ZN383_MACFA (Q4R6C2) Zinc finger protein 383| Length = 475 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = -2 Query: 383 CGDCHSAFTYISKIVDHEII 324 C +C AF+Y S ++DH+ I Sbjct: 256 CKECGKAFSYCSNLIDHQRI 275
>ZN383_HUMAN (Q8NA42) Zinc finger protein 383| Length = 475 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = -2 Query: 383 CGDCHSAFTYISKIVDHEII 324 C +C AF+Y S ++DH+ I Sbjct: 256 CKECGKAFSYCSNLIDHQRI 275 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,114,850 Number of Sequences: 219361 Number of extensions: 857479 Number of successful extensions: 2203 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2059 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2201 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
