ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl14a05 |
|---|---|
| Clone Library Name | barley_pub |
>SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precursor (EC| 3.2.1.-) (Soluble cell wall protein 11) Length = 542 Score = 30.8 bits (68), Expect = 0.89 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +1 Query: 196 GSSKS*AAVAERPKSMASSFPPNNNQHSCNLAEIYSSKLAV 318 GSS S AA+ PK++A + P N+ SC A+ SS L + Sbjct: 269 GSSSSSAAITSSPKAIA--YSPYNDDGSCKSADAVSSDLTL 307
>MET2_SCHPO (O60062) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine| O-trans-acetylase) Length = 489 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/61 (27%), Positives = 27/61 (44%) Frame = +1 Query: 130 HWRRHKNIPFDRRRKKKPCSFPGSSKS*AAVAERPKSMASSFPPNNNQHSCNLAEIYSSK 309 HW H +R R+++PC GSS + + P S SS P + + + + S Sbjct: 274 HWVVHNE--GNRNRRERPCRSNGSSPTSESALNSPASSVSSLPSLGASQTTDSSSLNQSS 331 Query: 310 L 312 L Sbjct: 332 L 332
>NU2M_ASTPE (Q33819) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 354 Score = 29.6 bits (65), Expect = 2.0 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Frame = -3 Query: 206 LLEPGNEQGFFFLLLSNGMFLCLLQCYYFFSVLTQFVTMYCG--------FGVFCRLQYI 51 L+EP N+ F + L+ G+ L L C+Y+F + Q V G F L Y+ Sbjct: 86 LMEPLNQATSFLMTLALGLKLGLFPCHYWFPDVIQGVGFIQGLVLSTWQKIAPFAVLVYV 145 Query: 50 VSAL 39 V +L Sbjct: 146 VESL 149
>PSTC2_MYCTU (P0A630) Phosphate transport system permease protein pstC-2| Length = 324 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/57 (28%), Positives = 25/57 (43%) Frame = -2 Query: 282 T*VLIIVWRKGRSHGFWSLGDGGLTLAGARE*TRLFFSSSVKWDVFVSPPMLLFLFS 112 T ++++ R G WSL DGG T A FS + ++S LF+ + Sbjct: 251 TVAVLVILRSAARPGTWSLFDGGYTFASKIASAASEFSEPLPTGAYISAGFALFVLT 307
>PSTC2_MYCBO (P0A631) Phosphate transport system permease protein pstC-2| Length = 324 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/57 (28%), Positives = 25/57 (43%) Frame = -2 Query: 282 T*VLIIVWRKGRSHGFWSLGDGGLTLAGARE*TRLFFSSSVKWDVFVSPPMLLFLFS 112 T ++++ R G WSL DGG T A FS + ++S LF+ + Sbjct: 251 TVAVLVILRSAARPGTWSLFDGGYTFASKIASAASEFSEPLPTGAYISAGFALFVLT 307
>CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3| Length = 1396 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 112 FLHNL*QCTVVLEYSVGYNISCQHCRSRKLN 20 ++ NL C LEY GY ++ H RKLN Sbjct: 1319 YMRNLSNCVPTLEYFTGYKMAELHILVRKLN 1349
>PSTC_MYCLE (Q50098) Phosphate transport system permease protein pstC| Length = 319 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/57 (28%), Positives = 24/57 (42%) Frame = -2 Query: 282 T*VLIIVWRKGRSHGFWSLGDGGLTLAGARE*TRLFFSSSVKWDVFVSPPMLLFLFS 112 T ++I+ R G WSL DGG T A FS + +++ LF + Sbjct: 246 TLAVLIILRSAARSGNWSLFDGGYTFASKIASAASEFSQPLPTGAYIAAGFALFFLT 302
>TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 438 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +3 Query: 6 QNNLRFSFRLLQC*HDIL*PTEYSKTTVHCYKLCKN 113 +NNL F+FR + H + +E K + HC K+C N Sbjct: 36 KNNLNFTFRAIHINHQLHPDSE--KWSDHCKKICIN 69
>NAD2_CAEEL (P32739) Sodium-dependent high-affinity dicarboxylate transporter 2| (Na(+)/dicarboxylate cotransporter 2) (NaDC-2) (ceNaDC2) Length = 551 Score = 27.7 bits (60), Expect = 7.5 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = -2 Query: 162 VKWDVFVSPPMLLFLFSSYTI 100 ++W VF PPM ++L +SY I Sbjct: 241 LQWMVFAIPPMFVYLLASYII 261
>BCH2_RHOCA (P26171) Bacteriochlorophyll synthase 44.5 kDa chain| Length = 428 Score = 27.7 bits (60), Expect = 7.5 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Frame = -2 Query: 258 RKGRSHGFW------SLGDGGLTLAGARE*TRLFFSSSVKWDVFVSPPMLLFLFSS 109 R+G G W + G GGL AGA + RLF + + + LLF+ ++ Sbjct: 351 REGTRMGLWGAAQAIAAGFGGLVGAGAADLMRLFLPDATAFGLVFGAQALLFIVAA 406
>YKG6_CAEEL (P46556) Hypothetical protein B0285.6 in chromosome III| Length = 577 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/23 (43%), Positives = 15/23 (65%) Frame = -2 Query: 168 SSVKWDVFVSPPMLLFLFSSYTI 100 S + W F PPM+ ++FSS+ I Sbjct: 253 SYLSWMAFAIPPMIFYMFSSWFI 275
>MARE2_CHICK (Q5ZKK1) Microtubule-associated protein RP/EB family member 2| Length = 338 Score = 27.3 bits (59), Expect = 9.8 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Frame = +1 Query: 142 HKNIPFDRRRKKKPCSFPGSSKS*AAVAER--PKSMASSFPPNNNQHSCNLAE-IYSSKL 312 H N P K P S PGS+ S + A++ P S AS + L+E ++S KL Sbjct: 197 HANSPTAGAAKSSPASKPGSTPSRPSSAKKAAPSSSASKSDKDLETQVIQLSEQVHSLKL 256 Query: 313 AV 318 A+ Sbjct: 257 AL 258
>IMMB_ECOLI (P22426) Colicin-B immunity protein (Microcin-B immunity protein)| Length = 175 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -3 Query: 203 LEPGNEQGFFFLLLSNGMFLCLLQCYYFFSVLT 105 LE GFF LL N + L +L C +F+VLT Sbjct: 123 LELTTAGGFFKLLSHNVITLFILYCSIYFTVLT 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,851,909 Number of Sequences: 219361 Number of extensions: 900831 Number of successful extensions: 2391 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2391 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
