ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl14a02 |
|---|---|
| Clone Library Name | barley_pub |
>GGABP_RAT (Q6AY97) GGA-binding partner| Length = 442 Score = 32.7 bits (73), Expect = 0.41 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Frame = -2 Query: 425 EMQKFQQVLLKH---EEERASRRAAKTVQRRSRVQLVEYLYGKRRGDSGSRR 279 E Q+ Q +K EE+R S +A + +R+R +LVEY+ +RR D +R+ Sbjct: 362 EQQRMSQEAVKAAIAEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQ 413
>GGABP_MOUSE (Q9D8L5) GGA-binding partner| Length = 442 Score = 32.7 bits (73), Expect = 0.41 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%) Frame = -2 Query: 425 EMQKFQQVLLKH---EEERASRRAAKTVQRRSRVQLVEYLYGKRRGDSGSRR 279 E Q+ Q +K EE+R S +A + +R+R +LVEY+ +RR D +R+ Sbjct: 362 EQQRMSQEAVKAAIVEEQRRSEKAMEEAVKRTRDELVEYVREQRRLDQVTRQ 413
>BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2B (Extracellular| matrix protein F22) Length = 2130 Score = 31.6 bits (70), Expect = 0.91 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = -2 Query: 431 EMEMQKFQQVLLKHEEERASRRAAKTVQRRSRVQLVEYLYGKRRGDSGSR 282 E EM++ Q VLLKH+E R + +RR + L++ + +++ + R Sbjct: 903 EKEMRRQQAVLLKHQELERHRLDMERERRRQHMMLMKAMEARKKAEEKER 952
>REG3B_MOUSE (P35230) Regenerating islet-derived protein 3 beta precursor (Reg| III-beta) (Pancreatitis-associated protein 1) Length = 175 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -1 Query: 264 LLLHEGQGHRRLTDVPSLFIQC*RGAKLFFSYLVLIFR 151 +LL + QG L ++PS I C +G++ + SY +F+ Sbjct: 19 MLLSQVQGEDSLKNIPSARISCPKGSQAYGSYCYALFQ 56
>GGABP_PONPY (Q5RCA7) GGA-binding partner| Length = 405 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = -2 Query: 425 EMQKFQQVLLKH---EEERASRRAAKTVQRRSRVQLVEYLYGKRRGDSGSRR 279 E +K Q +K EE++ S +A + +R+R +L+EY+ ++R D R+ Sbjct: 325 EQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQ 376
>GGABP_HUMAN (Q7Z6B0) GGA-binding partner (p56 accessory protein)| Length = 441 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Frame = -2 Query: 425 EMQKFQQVLLKH---EEERASRRAAKTVQRRSRVQLVEYLYGKRRGDSGSRR 279 E +K Q +K EE++ S +A + +R+R +L+EY+ ++R D R+ Sbjct: 361 EQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQ 412
>Y206_ENCCU (Q8SWH6) Hypothetical protein ECU02_0060| Length = 602 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/51 (31%), Positives = 22/51 (43%) Frame = -2 Query: 395 KHEEERASRRAAKTVQRRSRVQLVEYLYGKRRGDSGSRRPKRGPSCCMRAK 243 + E+ER A R +++ E GK +G G R KRG AK Sbjct: 312 REEDERKRAEAESARNREELLRMEEREKGKEKGSKGKGRKKRGKKGAGEAK 362
>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor| with BRCT domains 1) Length = 2089 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = -2 Query: 404 VLLKHEEERASRRAAKTVQRRSRVQLVEYLYGKRRGDSGSRRPKRGPSCCMRAKAIDD*L 225 V++K EEE + + K +V GKR+ D P R PS +R ++ Sbjct: 1837 VIIKEEEEDTAEKPGK------EEDVVTPKPGKRKRDQAEEEPNRIPSRSLRRTKLNQES 1890 Query: 224 TSPVCL 207 T+P L Sbjct: 1891 TAPKVL 1896
>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1| Length = 2171 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = -2 Query: 404 VLLKHEEERASRRAAKTVQRRSRVQLVEYLYGKRRGDSGSRRPKRGPSCCMRAKAIDD*L 225 V++K EEE + + K +V GKR+ D P R PS +R ++ Sbjct: 1919 VIIKEEEEDTAEKPGK------EEDVVTPKPGKRKRDQAEEEPNRIPSRSLRRTKLNQES 1972 Query: 224 TSPVCL 207 T+P L Sbjct: 1973 TAPKVL 1978
>BAZ2B_HUMAN (Q9UIF8) Bromodomain adjacent to zinc finger domain 2B (hWALp4)| Length = 1972 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = -2 Query: 431 EMEMQKFQQVLLKHEEERASRR---AAKTVQRRSRVQLVEYLYGKRRGDSGSRRPKR 270 E EM++ Q VLLKH+E R+ K ++ R + + E L ++R + + ++ Sbjct: 793 EKEMRRQQAVLLKHQERERRRQHMMLMKAMEARKKAEEKERLKQEKRDEKRLNKERK 849
>SH2P1_MOUSE (Q62018) SH2 domain-binding protein 1 (Tetratricopeptide| repeat-containing, SH2-binding phosphoprotein of 150 kDa) (TPR-containing, SH2-binding phosphoprotein of 150 kDa) (p150TSP) Length = 1173 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 14/69 (20%) Frame = -2 Query: 431 EMEMQKFQQVLLKHEEERASR----------RAAKTVQRRSRVQL----VEYLYGKRRGD 294 E E + +Q LLK +EE+ R + A+ V++ + + E K+RG Sbjct: 846 EQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGETEATKEKKRGG 905 Query: 293 SGSRRPKRG 267 G RR K+G Sbjct: 906 GGGRRSKKG 914
>SH2P1_HUMAN (Q6PD62) SH2 domain-binding protein 1| Length = 1173 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 14/69 (20%) Frame = -2 Query: 431 EMEMQKFQQVLLKHEEERASR----------RAAKTVQRRSRVQL----VEYLYGKRRGD 294 E E + +Q LLK +EE+ R + A+ V++ + + E K+RG Sbjct: 846 EQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGETEATKEKKRGG 905 Query: 293 SGSRRPKRG 267 G RR K+G Sbjct: 906 GGGRRSKKG 914 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,371,572 Number of Sequences: 219361 Number of extensions: 662545 Number of successful extensions: 2329 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2327 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
