>gb|AY112423.1| Zea mays CL34056_1 mRNA sequence
          Length = 512

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                          
Query: 227 gtcagtcgtcgatggccttggccctcatgcagcaggagggcccgcgc 273
           |||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 238 gtcagtcgtcgatggccttggctctcatgcagcaggacggcccgcgc 192



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 299 cgcgccgcttcccgtagaggtactccaccagctgcacccttgaccgccgctgcac 353
           ||||||||  ||||||||||||||||||||| |||||||  ||||||||||||||
Sbjct: 166 cgcgccgccgcccgtagaggtactccaccagatgcacccgcgaccgccgctgcac 112

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 91/109 (83%), Gaps = 9/109 (8%)
 Strand = Plus / Plus

                                                                            
Query: 230      agtcgtcgatggccttggccctcatgcagcaggagggcccgcgcttcggccggcgggacc 289
                ||||||||||||||||||| ||||||||||| || |||||||||  | |||||||     
Sbjct: 25570011 agtcgtcgatggccttggctctcatgcagcacgacggcccgcgccgctgccggcg----- 25570065

                                                                 
Query: 290      cgctgtcgccgcgccgcttcccgtagaggtactccaccagctgcaccct 338
                 ||||||||  || |||   |||||||||||||||||||||||||||||
Sbjct: 25570066 -gctgtcgcgccggcgc---ccgtagaggtactccaccagctgcaccct 25570110



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 360      ggcggcgcgccggctggcacgctcctcctcgtg 392
                ||||||||| ||| |||| ||||||||||||||
Sbjct: 25570177 ggcggcgcggcgggtggcgcgctcctcctcgtg 25570209

>dbj|AK106406.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-H03, full
            insert sequence
          Length = 1637

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 91/109 (83%), Gaps = 9/109 (8%)
 Strand = Plus / Minus

                                                                        
Query: 230  agtcgtcgatggccttggccctcatgcagcaggagggcccgcgcttcggccggcgggacc 289
            ||||||||||||||||||| ||||||||||| || |||||||||  | |||||||     
Sbjct: 1369 agtcgtcgatggccttggctctcatgcagcacgacggcccgcgccgctgccggcg----- 1315

                                                             
Query: 290  cgctgtcgccgcgccgcttcccgtagaggtactccaccagctgcaccct 338
             ||||||||  || |||   |||||||||||||||||||||||||||||
Sbjct: 1314 -gctgtcgcgccggcgc---ccgtagaggtactccaccagctgcaccct 1270



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 360  ggcggcgcgccggctggcacgctcctcctcgtg 392
            ||||||||| ||| |||| ||||||||||||||
Sbjct: 1203 ggcggcgcggcgggtggcgcgctcctcctcgtg 1171

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 91/109 (83%), Gaps = 9/109 (8%)
 Strand = Plus / Plus

                                                                            
Query: 230      agtcgtcgatggccttggccctcatgcagcaggagggcccgcgcttcggccggcgggacc 289
                ||||||||||||||||||| ||||||||||| || |||||||||  | |||||||     
Sbjct: 25498187 agtcgtcgatggccttggctctcatgcagcacgacggcccgcgccgctgccggcg----- 25498241

                                                                 
Query: 290      cgctgtcgccgcgccgcttcccgtagaggtactccaccagctgcaccct 338
                 ||||||||  || |||   |||||||||||||||||||||||||||||
Sbjct: 25498242 -gctgtcgcgccggcgc---ccgtagaggtactccaccagctgcaccct 25498286



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 360      ggcggcgcgccggctggcacgctcctcctcgtg 392
                ||||||||| ||| |||| ||||||||||||||
Sbjct: 25498353 ggcggcgcggcgggtggcgcgctcctcctcgtg 25498385

>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 144084

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 91/109 (83%), Gaps = 9/109 (8%)
 Strand = Plus / Plus

                                                                          
Query: 230    agtcgtcgatggccttggccctcatgcagcaggagggcccgcgcttcggccggcgggacc 289
              ||||||||||||||||||| ||||||||||| || |||||||||  | |||||||     
Sbjct: 139393 agtcgtcgatggccttggctctcatgcagcacgacggcccgcgccgctgccggcg----- 139447

                                                               
Query: 290    cgctgtcgccgcgccgcttcccgtagaggtactccaccagctgcaccct 338
               ||||||||  || |||   |||||||||||||||||||||||||||||
Sbjct: 139448 -gctgtcgcgccggcgc---ccgtagaggtactccaccagctgcaccct 139492



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 360    ggcggcgcgccggctggcacgctcctcctcgtg 392
              ||||||||| ||| |||| ||||||||||||||
Sbjct: 139559 ggcggcgcggcgggtggcgcgctcctcctcgtg 139591

>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 127003

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 91/109 (83%), Gaps = 9/109 (8%)
 Strand = Plus / Minus

                                                                          
Query: 230    agtcgtcgatggccttggccctcatgcagcaggagggcccgcgcttcggccggcgggacc 289
              ||||||||||||||||||| ||||||||||| || |||||||||  | |||||||     
Sbjct: 103707 agtcgtcgatggccttggctctcatgcagcacgacggcccgcgccgctgccggcg----- 103653

                                                               
Query: 290    cgctgtcgccgcgccgcttcccgtagaggtactccaccagctgcaccct 338
               ||||||||  || |||   |||||||||||||||||||||||||||||
Sbjct: 103652 -gctgtcgcgccggcgc---ccgtagaggtactccaccagctgcaccct 103608



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 360    ggcggcgcgccggctggcacgctcctcctcgtg 392
              ||||||||| ||| |||| ||||||||||||||
Sbjct: 103541 ggcggcgcggcgggtggcgcgctcctcctcgtg 103509

>gb|AC160465.3| Mus musculus chromosome 8, clone RP23-267N9, complete sequence
          Length = 224985

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 136   aagtctgctgcattgtctgaa 156
             |||||||||||||||||||||
Sbjct: 63920 aagtctgctgcattgtctgaa 63940

>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 143     ctgcattgtctgaagattaaa 163
               |||||||||||||||||||||
Sbjct: 2663828 ctgcattgtctgaagattaaa 2663808

>gb|AC162290.4| Mus musculus chromosome 8, clone RP23-227N17, complete sequence
          Length = 176486

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 136   aagtctgctgcattgtctgaa 156
             |||||||||||||||||||||
Sbjct: 54618 aagtctgctgcattgtctgaa 54598

>gb|AC102574.9| Mus musculus chromosome 8, clone RP23-239K24, complete sequence
          Length = 193168

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 136    aagtctgctgcattgtctgaa 156
              |||||||||||||||||||||
Sbjct: 129249 aagtctgctgcattgtctgaa 129229

>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 143     ctgcattgtctgaagattaaa 163
               |||||||||||||||||||||
Sbjct: 5817272 ctgcattgtctgaagattaaa 5817252

>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 386     cctcgtgcttcagcaggacctgct 409
               |||||||||||||||| |||||||
Sbjct: 1630132 cctcgtgcttcagcagaacctgct 1630109

>ref|XM_583392.2| PREDICTED: Bos taurus similar to non-POU domain containing,
           octamer-binding (LOC506880), mRNA
          Length = 978

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 417 ctgcatctccatctccagcc 436
           ||||||||||||||||||||
Sbjct: 51  ctgcatctccatctccagcc 32

>gb|AC138214.8| Mus musculus chromosome 1, clone RP23-404A6, complete sequence
          Length = 203478

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    ccttggccctcatgcagcag 261
              ||||||||||||||||||||
Sbjct: 101677 ccttggccctcatgcagcag 101696

>gb|AC140478.2| Mus musculus BAC clone RP24-149A3 from chromosome 6, complete sequence
          Length = 162440

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    acaatgaaatgaaacaagag 133
              ||||||||||||||||||||
Sbjct: 104805 acaatgaaatgaaacaagag 104824

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 362     cggcgcgccggctggcacgc 381
               ||||||||||||||||||||
Sbjct: 1653285 cggcgcgccggctggcacgc 1653266

>ref|XM_838423.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1340)
           partial mRNA
          Length = 255

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 386 cctcgtgcttcagcaggacctgct 409
           |||||||||||||||| |||||||
Sbjct: 73  cctcgtgcttcagcagaacctgct 50

>emb|AL358943.13| Human DNA sequence from clone RP3-353O9 on chromosome 6 Contains the 5'
             end of the EPB41L2 gene for erythrocyte membrane protein
             band 4.1-like 2, complete sequence
          Length = 121355

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    acagttcacataattattta 102
             ||||||||||||||||||||
Sbjct: 23399 acagttcacataattattta 23418

>emb|AL138914.9| Human DNA sequence from clone RP11-15L1 on chromosome 13 Contains part of
              a novel gene, complete sequence
          Length = 153439

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    cacaatgaaatgaaacaaga 132
              ||||||||||||||||||||
Sbjct: 136298 cacaatgaaatgaaacaaga 136317

>emb|AJ404331.1|PDU404331 Prunus dulcis lox gene for lipoxygenase, exons 1-9
          Length = 6776

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 114  acaatgaaatgaaacaagagcaaa 137
            |||| |||||||||||||||||||
Sbjct: 1845 acaaggaaatgaaacaagagcaaa 1822

>gb|AC161890.4| Mus musculus 6 BAC RP23-356P12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 243990

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   acaatgaaatgaaacaagag 133
             ||||||||||||||||||||
Sbjct: 83755 acaatgaaatgaaacaagag 83774

>gb|AC073855.5| Homo sapiens BAC clone RP11-799A12 from 4, complete sequence
          Length = 193024

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    tacttgaggtaatgaagaaa 73
             ||||||||||||||||||||
Sbjct: 58262 tacttgaggtaatgaagaaa 58281

>gb|AC154751.2| Mus musculus BAC clone RP24-399L21 from chromosome 14, complete sequence
          Length = 176992

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 106    agagcagcacaatgaaatgaaaca 129
              ||||||| ||||||||||||||||
Sbjct: 168585 agagcaggacaatgaaatgaaaca 168562

>gb|AC083949.3| Homo sapiens BAC clone CTD-2096A9 from 2, complete sequence
          Length = 109296

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   ggacctgctggaacttctgc 420
             ||||||||||||||||||||
Sbjct: 39197 ggacctgctggaacttctgc 39178

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 249     cctcatgcagcaggagggcc 268
               ||||||||||||||||||||
Sbjct: 3961446 cctcatgcagcaggagggcc 3961465

>emb|CT025857.10| Mouse DNA sequence from clone RP24-315F22 on chromosome 14, complete
             sequence
          Length = 107710

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 106   agagcagcacaatgaaatgaaaca 129
             ||||||| ||||||||||||||||
Sbjct: 19800 agagcaggacaatgaaatgaaaca 19777


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,929,893
Number of Sequences: 3902068
Number of extensions: 3929893
Number of successful extensions: 90595
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90361
Number of HSP's gapped (non-prelim): 234
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)