>SYD_PROMT (Q46I98) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 606

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 93  NKNRLERVHHRYCAKKP 143
           ++NRLE +HH +CA KP
Sbjct: 453 DENRLEAIHHPFCAPKP 469

>ARNT_ECOLI (P76473) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose|
           arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl
           phosphate-alpha-L-Ara4N transferase)
           (4-amino-4-deoxy-L-arabinose lipid A transferase)
           (Polymyxin resistance protein pmrK)
          Length = 550

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 225 LPGLLVIGECSAAYLFT*YRLSWHEMPVVFWHSTYGGLS---LVYFC*LSKLNFVYSLMY 55
           LPG L  G  +  +  T Y LSW  MP++F+    G L    L  F  L+ L   Y+L+ 
Sbjct: 275 LPGALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLA 334

Query: 54  RYRN 43
              N
Sbjct: 335 AKNN 338

>ARNT_ECOL6 (Q8FFL9) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose|
           arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl
           phosphate-alpha-L-Ara4N transferase)
           (4-amino-4-deoxy-L-arabinose lipid A transferase)
          Length = 550

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 225 LPGLLVIGECSAAYLFT*YRLSWHEMPVVFWHSTYGGLS---LVYFC*LSKLNFVYSLMY 55
           LPG L  G  +  +  T Y LSW  MP++F+    G L    L  F  L+ L   Y+L+ 
Sbjct: 275 LPGALYAGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFAPLAMLMAHYALLA 334

Query: 54  RYRN 43
              N
Sbjct: 335 AKNN 338

>ARNT_ECO57 (Q8XDZ1) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose|
           arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl
           phosphate-alpha-L-Ara4N transferase)
           (4-amino-4-deoxy-L-arabinose lipid A transferase)
          Length = 550

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 225 LPGLLVIGECSAAYLFT*YRLSWHEMPVVFWHSTYGGLS---LVYFC*LSKLNFVYSLMY 55
           LPG L  G  +  +  T Y LSW  MP++F+    G L    L  F  L+ L   Y+L+ 
Sbjct: 275 LPGALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFAPLAMLMAHYALLA 334

Query: 54  RYRN 43
              N
Sbjct: 335 AKNN 338

>NMD2_SCHPO (O13824) Nonsense-mediated mRNA decay protein 2 (Up-frameshift|
           suppressor 2)
          Length = 1049

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 20  KHYYDIQMFL*RYIRE*TKFSLL 88
           KH YD ++ + RYI E TKF L+
Sbjct: 533 KHEYDTRLLIVRYISELTKFQLM 555

>ARNT_SHIFL (Q83KB6) Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose|
           arabinosyl transferase (EC 2.-.-.-) (Undecaprenyl
           phosphate-alpha-L-Ara4N transferase)
           (4-amino-4-deoxy-L-arabinose lipid A transferase)
          Length = 550

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = -3

Query: 225 LPGLLVIGECSAAYLFT*YRLSWHEMPVVFWHSTYGGLS---LVYFC*LSKLNFVYSLMY 55
           LPG L  G  +  +  T Y LSW  MP++F+    G L    L  F  L+ L   Y+L+ 
Sbjct: 275 LPGALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFAPLAMLLAHYALLA 334

Query: 54  RYRN 43
              N
Sbjct: 335 AKNN 338

>NOTC1_BRARE (P46530) Neurogenic locus notch homolog protein 1 precursor|
          Length = 2437

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 197  HSPITRSPGSQDQFA*ASPHAKLTARSE 280
            H  +T S GS DQ++ +SPH+ L+  SE
Sbjct: 2391 HPFLTPSAGSPDQWSSSSPHSNLSDWSE 2418

>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting|
           gene 1) (Rig-1)
          Length = 1366

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 278 QTLQLIWHVD*PMQIDLGFQGFW*SASVVQ 189
           +TLQ+ W VD P+Q+  GF+  W  A + Q
Sbjct: 684 RTLQVSWTVDGPVQLVQGFRVSWRIAGLDQ 713


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,480,347
Number of Sequences: 219361
Number of extensions: 904854
Number of successful extensions: 1693
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)