ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC151312.2| Xenopus tropicalis clone ISB-172N2, complete sequ... 40 0.23
2gb|AC151310.2| Xenopus tropicalis clone ISB-151J15, complete seq... 40 0.23
3emb|Z78415.1|CEC17G1 Caenorhabditis elegans Cosmid C17G1, comple... 40 0.23
4gb|U66061.1| Human germline T-cell receptor beta chain TCRBV17S1... 38 0.90
5gb|AC154400.2| Mus musculus BAC clone RP23-163P4 from chromosome... 38 0.90
6ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) ... 38 0.90
7gb|AC122399.4| Mus musculus BAC clone RP24-92B2 from chromosome ... 38 0.90
8emb|CT009702.5| Mouse DNA sequence from clone RP23-140A15 on chr... 38 0.90
9gb|AC146433.3| Pan troglodytes BAC clone RP43-19C19 from 7, comp... 38 0.90
10gb|AC117680.7| Mus musculus chromosome 1, clone RP23-435M2, comp... 38 0.90
11emb|AL450083.11| Human DNA sequence from clone RP11-514P7 on chr... 38 0.90
12emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 38 0.90
13gb|AC099753.2| Homo sapiens chromosome 3 clone RP11-466A13, comp... 38 0.90
14dbj|AK140114.1| Mus musculus adult male corpora quadrigemina cDN... 38 0.90
15gb|AC104597.3| Homo sapiens BAC clone RP11-114L10 from 7, comple... 38 0.90
16gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 38 0.90
17emb|BX005462.10| Zebrafish DNA sequence from clone CH211-158D24 ... 38 0.90
18emb|AL935329.11| Zebrafish DNA sequence from clone CH211-253P2 i... 38 0.90
19gb|AC121066.3| Oryctolagus cuniculus strain New Zealand White cl... 38 0.90
20gb|AC175058.1| Mus musculus BAC clone RP23-210C4 from chromosome... 38 0.90
21emb|BX571790.8| Zebrafish DNA sequence from clone CH211-199M3 in... 38 0.90
22emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 38 0.90
23gb|AC117993.1| Ciona savignyi, clone XX-1E4, complete sequence 36 3.5
24gb|AC157899.5| Mus musculus chromosome 15, clone RP23-98F15, com... 36 3.5
25gb|AC149487.1| Solanum demissum chromosome 5 clone PGEC407 map M... 36 3.5
26gb|AC148409.2| X. tropicalis BAC clone ISB1-267G18 containing ge... 36 3.5
27gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, co... 36 3.5
28gb|AC144705.2| Danio rerio clone CH211-160P5, complete sequence 36 3.5
29ref|XM_855780.1| PREDICTED: Canis familiaris similar to thyroid ... 36 3.5
30gb|AC144389.22| Medicago truncatula clone mth2-25e14, complete s... 36 3.5
31emb|AL590551.7| Human DNA sequence from clone RP11-243O10 on chr... 36 3.5
32emb|AL365185.11| Human DNA sequence from clone RP11-416C17 on ch... 36 3.5
33emb|AL365224.8| Human DNA sequence from clone RP11-96B21 on chro... 36 3.5
34emb|AL356142.24| Human DNA sequence from clone RP11-765C10 on ch... 36 3.5
35emb|AL157896.9| Human DNA sequence from clone RP11-397C18 on chr... 36 3.5
36emb|AL121872.12|HSB348B13 Human DNA sequence from clone RP13-348... 36 3.5
37emb|AL772144.4| Zebrafish DNA sequence from clone CH211-164J3 in... 36 3.5
38gb|AC011028.11| Homo sapiens chromosome 8, clone RP11-118J17, co... 36 3.5
39emb|BX571943.8| Zebrafish DNA sequence from clone DKEY-159C24 in... 36 3.5
40emb|BX324231.9| Zebrafish DNA sequence from clone DKEY-57H18 in ... 36 3.5
41gb|AC104040.3| Homo sapiens chromosome 8, clone CTD-2023L15, com... 36 3.5
42gb|AC098839.3| Genomic sequence for Mus musculus, clone RP23-469... 36 3.5
43gb|AC096914.2| Homo sapiens chromosome 3 clone RP11-16E8, comple... 36 3.5
44gb|AC092504.3| Homo sapiens chromosome 3 clone RP11-598P2, compl... 36 3.5
45emb|BX548068.13| Zebrafish DNA sequence from clone DKEYP-53E7 in... 36 3.5
46emb|BX649281.7| Zebrafish DNA sequence from clone CH211-210H14 i... 36 3.5
47dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 36 3.5
48gb|AC008217.5|AC008217 Drosophila melanogaster, chromosome 3R, r... 36 3.5
49gb|AC008253.8|AC008253 Drosophila melanogaster, chromosome 3R, r... 36 3.5
50gb|AC025782.7|AC025782 Arabidopsis thaliana chromosome 1 BAC T15... 36 3.5
51dbj|AB047825.1| Saccopharynx lavenbergi mitochondrial DNA, compl... 36 3.5
52gb|AC006032.2|AC006032 Homo sapiens BAC clone RP11-115E20 from Y... 36 3.5
53gb|U82696.2| Homo sapiens chromosome X clone ICRFXc104-F064, ICR... 36 3.5
54gb|AF274855.3| Homo sapiens chromosome X clone RP11-366F6 map q2... 36 3.5
55gb|AC104257.12| Homo sapiens chromosome 8, clone CTD-2501M5, com... 36 3.5
56gb|AC009424.2|AC009424 Homo sapiens, clone RP11-45E1, complete s... 36 3.5
57emb|BX072574.7| Zebrafish DNA sequence from clone DKEY-27P21 in ... 36 3.5
58emb|CR556710.7| Zebrafish DNA sequence from clone CH211-132E22 i... 36 3.5
59emb|BX323829.16| Zebrafish DNA sequence from clone RP71-14B1 in ... 36 3.5
60gb|AE003762.4| Drosophila melanogaster chromosome 3R, section 10... 36 3.5
61dbj|AK113240.1| Ciona intestinalis cDNA, clone:ciad019a15, full ... 36 3.5
62dbj|AP003470.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 36 3.5
63dbj|AP002846.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 36 3.5
64gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 36 3.5
65emb|BX000511.2|CNS08CE1 Oryza sativa chromosome 12, . BAC OJ1136... 36 3.5
66emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chr... 36 3.5
67gb|AC159239.3| Mus musculus BAC clone RP24-496E14 from chromosom... 36 3.5
68dbj|AP001208.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 36 3.5 
>gb|AC151312.2| Xenopus tropicalis clone ISB-172N2, complete sequence
          Length = 59449

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    gagtaaaatacaataataat 31
             ||||||||||||||||||||
Sbjct: 21907 gagtaaaatacaataataat 21926
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>gb|AC151310.2| Xenopus tropicalis clone ISB-151J15, complete sequence
          Length = 78554

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    gagtaaaatacaataataat 31
             ||||||||||||||||||||
Sbjct: 29654 gagtaaaatacaataataat 29673
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>emb|Z78415.1|CEC17G1 Caenorhabditis elegans Cosmid C17G1, complete sequence
          Length = 37990

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   agtaaaatacaataataatg 32
            ||||||||||||||||||||
Sbjct: 5869 agtaaaatacaataataatg 5850
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>gb|U66061.1| Human germline T-cell receptor beta chain TCRBV17S1A1T, TCRBV2S1,
              TCRBV10S1P, TCRBV29S1P, TCRBV19S1P, TCRBV15S1,
              TCRBV11S1A1T, HVB relic, TCRBV28S1P, TCRBV34S1, TCRBV14S1,
              TCRBV3S1, TCRBV4S1A1T, TRY4, TRY5, TRY6, TRY7, TRY8,
              TCRBD1, TCRBJ1S1, TCRBJ1S2, TCRBJ1S3, TCRBJ1S4, TCRBJ1S5,
              TCRBJ1S6, TCRBC1, TCRBD2, TCRBJ2S1, TCRBJ2S2, TCRBJ2S3,
              TCRBJ2S4, TCRBJ2S5, TCRBJ2S6, TCRBJ2S7, TCRBC2,
              TCRBV20S1A1N2 genes from bases 452324 to 684973 (section 3
              of 3)
          Length = 232650

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     taaaatacaataataatga 33
              |||||||||||||||||||
Sbjct: 134794 taaaatacaataataatga 134812
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>gb|AC154400.2| Mus musculus BAC clone RP23-163P4 from chromosome 16, complete sequence
          Length = 180951

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 16    aaaatacaataataatgag 34
             |||||||||||||||||||
Sbjct: 39394 aaaatacaataataatgag 39412
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>ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) on chromosome 7
          Length = 684973

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     taaaatacaataataatga 33
              |||||||||||||||||||
Sbjct: 587117 taaaatacaataataatga 587135
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>gb|AC122399.4| Mus musculus BAC clone RP24-92B2 from chromosome 17, complete sequence
          Length = 184002

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     aaaatacaataataatgag 34
              |||||||||||||||||||
Sbjct: 168296 aaaatacaataataatgag 168314
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>emb|CT009702.5| Mouse DNA sequence from clone RP23-140A15 on chromosome 16, complete
             sequence
          Length = 230233

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    aaaatacaataataatgag 34
             |||||||||||||||||||
Sbjct: 65335 aaaatacaataataatgag 65317
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>gb|AC146433.3| Pan troglodytes BAC clone RP43-19C19 from 7, complete sequence
          Length = 180951

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     taaaatacaataataatga 33
              |||||||||||||||||||
Sbjct: 144368 taaaatacaataataatga 144386
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>gb|AC117680.7| Mus musculus chromosome 1, clone RP23-435M2, complete sequence
          Length = 202195

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     aaaatacaataataatgag 34
              |||||||||||||||||||
Sbjct: 151364 aaaatacaataataatgag 151382
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>emb|AL450083.11| Human DNA sequence from clone RP11-514P7 on chromosome X, complete
             sequence
          Length = 169494

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    agtaaaatacaataataat 31
             |||||||||||||||||||
Sbjct: 52050 agtaaaatacaataataat 52032
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 12      gagtaaaatacaataataa 30
               |||||||||||||||||||
Sbjct: 3617784 gagtaaaatacaataataa 3617802
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>gb|AC099753.2| Homo sapiens chromosome 3 clone RP11-466A13, complete sequence
          Length = 171696

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    agtaaaatacaataataat 31
             |||||||||||||||||||
Sbjct: 97475 agtaaaatacaataataat 97457
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>dbj|AK140114.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230303K20
            product:unclassifiable, full insert sequence
          Length = 2212

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 16   aaaatacaataataatgag 34
            |||||||||||||||||||
Sbjct: 1746 aaaatacaataataatgag 1728
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>gb|AC104597.3| Homo sapiens BAC clone RP11-114L10 from 7, complete sequence
          Length = 161425

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    taaaatacaataataatga 33
             |||||||||||||||||||
Sbjct: 15997 taaaatacaataataatga 16015
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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 13     agtaaaatacaataataat 31
              |||||||||||||||||||
Sbjct: 137329 agtaaaatacaataataat 137347
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>emb|BX005462.10| Zebrafish DNA sequence from clone CH211-158D24 in linkage group 8,
             complete sequence
          Length = 175315

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    aatacaataataatgagtt 36
             |||||||||||||||||||
Sbjct: 65584 aatacaataataatgagtt 65602
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>emb|AL935329.11| Zebrafish DNA sequence from clone CH211-253P2 in linkage group 12,
              complete sequence
          Length = 172778

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 13     agtaaaatacaataataat 31
              |||||||||||||||||||
Sbjct: 111534 agtaaaatacaataataat 111516
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>gb|AC121066.3| Oryctolagus cuniculus strain New Zealand White clone LB1-22B24,
             complete sequence
          Length = 207743

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    agtaaaatacaataataat 31
             |||||||||||||||||||
Sbjct: 77792 agtaaaatacaataataat 77810
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>gb|AC175058.1| Mus musculus BAC clone RP23-210C4 from chromosome 17, complete sequence
          Length = 218488

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     aaaatacaataataatgag 34
              |||||||||||||||||||
Sbjct: 109359 aaaatacaataataatgag 109341
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>emb|BX571790.8| Zebrafish DNA sequence from clone CH211-199M3 in linkage group 20,
             complete sequence
          Length = 200944

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    agtaaaatacaataataat 31
             |||||||||||||||||||
Sbjct: 50055 agtaaaatacaataataat 50037
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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 38.2 bits (19), Expect = 0.90
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 16     aaaatacaataataatgag 34
              |||||||||||||||||||
Sbjct: 754732 aaaatacaataataatgag 754750
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>gb|AC117993.1| Ciona savignyi, clone XX-1E4, complete sequence
          Length = 50129

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     caacacaaaccgagtaaa 18
             ||||||||||||||||||
Sbjct: 25159 caacacaaaccgagtaaa 25176
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>gb|AC157899.5| Mus musculus chromosome 15, clone RP23-98F15, complete sequence
          Length = 199372

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     cacaaaccgagtaaaata 21
             ||||||||||||||||||
Sbjct: 13959 cacaaaccgagtaaaata 13942
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>gb|AC149487.1| Solanum demissum chromosome 5 clone PGEC407 map MAP_LOC, complete
            sequence
          Length = 73587

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 14   gtaaaatacaataataat 31
            ||||||||||||||||||
Sbjct: 7928 gtaaaatacaataataat 7945
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>gb|AC148409.2| X. tropicalis BAC clone ISB1-267G18 containing gene for frzb2, complete
             sequence
          Length = 69081

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    aaaatacaataataatga 33
             ||||||||||||||||||
Sbjct: 56860 aaaatacaataataatga 56843
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>gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, complete sequence
          Length = 206675

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 4     cacaaaccgagtaaaata 21
             ||||||||||||||||||
Sbjct: 82041 cacaaaccgagtaaaata 82024
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>gb|AC144705.2| Danio rerio clone CH211-160P5, complete sequence
          Length = 163897

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 13     agtaaaatacaataataa 30
              ||||||||||||||||||
Sbjct: 100194 agtaaaatacaataataa 100211
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>ref|XM_855780.1| PREDICTED: Canis familiaris similar to thyroid hormone receptor
            interactor 12, transcript variant 3 (LOC477400), mRNA
          Length = 4620

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   agtaaaatacaataataa 30
            ||||||||||||||||||
Sbjct: 4494 agtaaaatacaataataa 4477
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>gb|AC144389.22| Medicago truncatula clone mth2-25e14, complete sequence
          Length = 127170

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    gtaaaatacaataataat 31
             ||||||||||||||||||
Sbjct: 51859 gtaaaatacaataataat 51842
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>emb|AL590551.7| Human DNA sequence from clone RP11-243O10 on chromosome 6 Contains part
             of a novel gene (FNDC2), the 3' end of the FNDC1 gene for
             fibronectin type III domain containing 1, a novel gene and
             a CpG island, complete sequence
          Length = 106861

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 18    aatacaataataatgagt 35
             ||||||||||||||||||
Sbjct: 35829 aatacaataataatgagt 35846
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>emb|AL365185.11| Human DNA sequence from clone RP11-416C17 on chromosome 10 Contains
             part of gene FLJ11218, complete sequence
          Length = 150635

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    gtaaaatacaataataat 31
             ||||||||||||||||||
Sbjct: 16636 gtaaaatacaataataat 16653
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>emb|AL365224.8| Human DNA sequence from clone RP11-96B21 on chromosome 6 Contains part
             the C6orf190 gene, complete sequence
          Length = 66516

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 15    taaaatacaataataatgagtt 36
             ||||||||||||| ||||||||
Sbjct: 39122 taaaatacaataaaaatgagtt 39101
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>emb|AL356142.24| Human DNA sequence from clone RP11-765C10 on chromosome 10 Contains the
             5' end of a mediator of RNA polymerase II transcription
             subunit 6 homolog (yeast) (MED6) pseudogene, complete
             sequence
          Length = 43018

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    aatacaataataatgagt 35
             ||||||||||||||||||
Sbjct: 38677 aatacaataataatgagt 38660
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>emb|AL157896.9| Human DNA sequence from clone RP11-397C18 on chromosome 10 Contains the
             3' end of a variant of the gene for a novel protein
             (FLJ10210) and the 3' end of a novel gene, complete
             sequence
          Length = 65664

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    aaaatacaataataatga 33
             ||||||||||||||||||
Sbjct: 34906 aaaatacaataataatga 34889
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>emb|AL121872.12|HSB348B13 Human DNA sequence from clone RP13-348B13 on chromosome X Contains a
              pseudogene similar to part of SRI (sorcin) and a novel
              gene, complete sequence
          Length = 142689

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 16     aaaatacaataataatga 33
              ||||||||||||||||||
Sbjct: 138647 aaaatacaataataatga 138664
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>emb|AL772144.4| Zebrafish DNA sequence from clone CH211-164J3 in linkage group 3
             Contains three CpG islands, complete sequence
          Length = 153837

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 19    atacaataataatgagtt 36
             ||||||||||||||||||
Sbjct: 40067 atacaataataatgagtt 40050
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>gb|AC011028.11| Homo sapiens chromosome 8, clone RP11-118J17, complete sequence
          Length = 181598

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 14     gtaaaatacaataataat 31
              ||||||||||||||||||
Sbjct: 157616 gtaaaatacaataataat 157599
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>emb|BX571943.8| Zebrafish DNA sequence from clone DKEY-159C24 in linkage group 13,
             complete sequence
          Length = 193538

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    gtaaaatacaataataat 31
             ||||||||||||||||||
Sbjct: 24514 gtaaaatacaataataat 24531
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>emb|BX324231.9| Zebrafish DNA sequence from clone DKEY-57H18 in linkage group 12,
             complete sequence
          Length = 17804

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 13    agtaaaatacaataataatgag 34
             ||||||| ||||||||||||||
Sbjct: 10345 agtaaaaaacaataataatgag 10324
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>gb|AC104040.3| Homo sapiens chromosome 8, clone CTD-2023L15, complete sequence
          Length = 136646

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 12    gagtaaaatacaataata 29
             ||||||||||||||||||
Sbjct: 76730 gagtaaaatacaataata 76713
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>gb|AC098839.3| Genomic sequence for Mus musculus, clone RP23-469C2, complete sequence
          Length = 192470

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    gagtaaaatacaataata 29
             ||||||||||||||||||
Sbjct: 46865 gagtaaaatacaataata 46882
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>gb|AC096914.2| Homo sapiens chromosome 3 clone RP11-16E8, complete sequence
          Length = 167978

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 15    taaaatacaataataatgagtt 36
             ||||||||||||| ||||||||
Sbjct: 96891 taaaatacaataaaaatgagtt 96912
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>gb|AC092504.3| Homo sapiens chromosome 3 clone RP11-598P2, complete sequence
          Length = 149527

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 15    taaaatacaataataatgagtt 36
             ||||||||||||| ||||||||
Sbjct: 11051 taaaatacaataaaaatgagtt 11072
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>emb|BX548068.13| Zebrafish DNA sequence from clone DKEYP-53E7 in linkage group 10,
             complete sequence
          Length = 177449

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    gtaaaatacaataataat 31
             ||||||||||||||||||
Sbjct: 12382 gtaaaatacaataataat 12399
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>emb|BX649281.7| Zebrafish DNA sequence from clone CH211-210H14 in linkage group 17,
             complete sequence
          Length = 157279

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    gtaaaatacaataataat 31
             ||||||||||||||||||
Sbjct: 47093 gtaaaatacaataataat 47076
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 10     ccgagtaaaatacaataataat 31
              ||||| ||||||||||||||||
Sbjct: 714355 ccgagcaaaatacaataataat 714334
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>gb|AC008217.5|AC008217 Drosophila melanogaster, chromosome 3R, region 98B-98B, BAC clone
              BACR10J03, complete sequence
          Length = 193245

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 11     cgagtaaaatacaataataatgagtt 36
              |||| ||||||||||| |||||||||
Sbjct: 136207 cgaggaaaatacaatattaatgagtt 136232
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>gb|AC008253.8|AC008253 Drosophila melanogaster, chromosome 3R, region 98B1-98B2, BAC clone
              BACR48A16, complete sequence
          Length = 180887

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 11     cgagtaaaatacaataataatgagtt 36
              |||| ||||||||||| |||||||||
Sbjct: 104945 cgaggaaaatacaatattaatgagtt 104970
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>gb|AC025782.7|AC025782 Arabidopsis thaliana chromosome 1 BAC T15P17 genomic sequence, complete
             sequence
          Length = 97899

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 13    agtaaaatacaataataa 30
             ||||||||||||||||||
Sbjct: 76411 agtaaaatacaataataa 76394
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>dbj|AB047825.1| Saccopharynx lavenbergi mitochondrial DNA, complete genome
          Length = 18495

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 15    taaaatacaataataatg 32
             ||||||||||||||||||
Sbjct: 18286 taaaatacaataataatg 18303



 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 15    taaaatacaataataatg 32
             ||||||||||||||||||
Sbjct: 10071 taaaatacaataataatg 10088
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>gb|AC006032.2|AC006032 Homo sapiens BAC clone RP11-115E20 from Y, complete sequence
          Length = 170282

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 16    aaaatacaataataatga 33
             ||||||||||||||||||
Sbjct: 47809 aaaatacaataataatga 47826
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>gb|U82696.2| Homo sapiens chromosome X clone ICRFXc104-F064, ICRFXc104-G0799,
             Qc-14E2, Qc-13D8, Qc-7G11, ICRFXc104-E0681, Qc-11C8,
             Qc-9A9 map q28, complete sequence
          Length = 161664

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    gtaaaatacaataataat 31
             ||||||||||||||||||
Sbjct: 45772 gtaaaatacaataataat 45755
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>gb|AF274855.3| Homo sapiens chromosome X clone RP11-366F6 map q28, complete sequence
          Length = 200395

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 14     gtaaaatacaataataat 31
              ||||||||||||||||||
Sbjct: 101926 gtaaaatacaataataat 101909
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>gb|AC104257.12| Homo sapiens chromosome 8, clone CTD-2501M5, complete sequence
          Length = 167787

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 12     gagtaaaatacaataata 29
              ||||||||||||||||||
Sbjct: 161186 gagtaaaatacaataata 161203
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>gb|AC009424.2|AC009424 Homo sapiens, clone RP11-45E1, complete sequence
          Length = 139438

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    gtaaaatacaataataat 31
             ||||||||||||||||||
Sbjct: 51904 gtaaaatacaataataat 51887
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>emb|BX072574.7| Zebrafish DNA sequence from clone DKEY-27P21 in linkage group 5,
             complete sequence
          Length = 140410

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    gtaaaatacaataataat 31
             ||||||||||||||||||
Sbjct: 53529 gtaaaatacaataataat 53546
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>emb|CR556710.7| Zebrafish DNA sequence from clone CH211-132E22 in linkage group 13,
             complete sequence
          Length = 97211

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 13    agtaaaatacaataataa 30
             ||||||||||||||||||
Sbjct: 32269 agtaaaatacaataataa 32252
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>emb|BX323829.16| Zebrafish DNA sequence from clone RP71-14B1 in linkage group 18,
             complete sequence
          Length = 148650

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    gtaaaatacaataataat 31
             ||||||||||||||||||
Sbjct: 79547 gtaaaatacaataataat 79564
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>gb|AE003762.4| Drosophila melanogaster chromosome 3R, section 100 of 118 of the complete
              sequence
          Length = 231486

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 11     cgagtaaaatacaataataatgagtt 36
              |||| ||||||||||| |||||||||
Sbjct: 165885 cgaggaaaatacaatattaatgagtt 165910
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>dbj|AK113240.1| Ciona intestinalis cDNA, clone:ciad019a15, full insert sequence
          Length = 2706

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 11   cgagtaaaatacaataat 28
            ||||||||||||||||||
Sbjct: 2581 cgagtaaaatacaataat 2564
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>dbj|AP003470.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1460A12
          Length = 157679

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    gtaaaatacaataataat 31
             ||||||||||||||||||
Sbjct: 69088 gtaaaatacaataataat 69105
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>dbj|AP002846.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1084C9
          Length = 176998

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 14     gtaaaatacaataataat 31
              ||||||||||||||||||
Sbjct: 106156 gtaaaatacaataataat 106173
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 10     ccgagtaaaatacaataataat 31
              ||||| ||||||||||||||||
Sbjct: 714355 ccgagcaaaatacaataataat 714334
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>emb|BX000511.2|CNS08CE1 Oryza sativa chromosome 12, . BAC OJ1136_E08 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 118211

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 10    ccgagtaaaatacaataataat 31
             ||||| ||||||||||||||||
Sbjct: 64779 ccgagcaaaatacaataataat 64800
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>emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chromosome X, complete
              sequence
          Length = 179420

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 13     agtaaaatacaataataa 30
              ||||||||||||||||||
Sbjct: 108106 agtaaaatacaataataa 108089
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>gb|AC159239.3| Mus musculus BAC clone RP24-496E14 from chromosome 13, complete
             sequence
          Length = 206286

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 12    gagtaaaatacaataata 29
             ||||||||||||||||||
Sbjct: 20998 gagtaaaatacaataata 20981
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>dbj|AP001208.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1930G5
          Length = 154587

 Score = 36.2 bits (18), Expect = 3.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 14    gtaaaatacaataataat 31
             ||||||||||||||||||
Sbjct: 58338 gtaaaatacaataataat 58355


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 523,263
Number of Sequences: 3902068
Number of extensions: 523263
Number of successful extensions: 149413
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149106
Number of HSP's gapped (non-prelim): 307
length of query: 36
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 16
effective length of database: 17,155,003,908
effective search space: 274480062528
effective search space used: 274480062528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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