ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, ... 369 4e-99
2gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (U... 174 1e-40
3gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence 98 2e-17
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
6dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
7dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
8dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
11emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 54 3e-04
12emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 54 3e-04
13emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 54 3e-04
14gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, ... 48 0.018
15ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activati... 46 0.073
16gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 ma... 46 0.073
17gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, co... 46 0.073
18dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin... 46 0.073
19gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, co... 46 0.073
20gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating e... 46 0.073
21emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Co... 46 0.073
22emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Co... 46 0.073
23emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Co... 46 0.073
24emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiqui... 44 0.29
25gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, com... 40 4.5
26ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM016... 40 4.5
27gb|AE014075.1| Escherichia coli CFT073, complete genome 40 4.5
28gb|CP000243.1| Escherichia coli UTI89, complete genome 40 4.5
29dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 4.5
30gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Can... 40 4.5
31gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite s... 40 4.5
32emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragm... 40 4.5
33emb|AM236324.1| Escherichia coli genome fragment containing the ... 40 4.5 
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3695

 Score =  369 bits (186), Expect = 4e-99
 Identities = 290/323 (89%), Gaps = 10/323 (3%)
 Strand = Plus / Minus

                                                                        
Query: 24   ttttagttgtaaacgcatcatgcaaca--------gatgatgttgtgcgt-gtcttgtga 74
            |||||||||| ||||||||||||||||        ||||||||||||| | |||| ||||
Sbjct: 3687 ttttagttgtgaacgcatcatgcaacaattatcaagatgatgttgtgcctagtctcgtga 3628

                                                                        
Query: 75   atcgtgatgtctggtaacaactccagatcagcccccaatgatccaatcgacatcgagatg 134
            || || ||||||||||||||| | |||||||||||||||||||| ||||||||| |||||
Sbjct: 3627 atagttatgtctggtaacaacccgagatcagcccccaatgatccgatcgacatcaagatg 3568

                                                                        
Query: 135  gtagaaaggaaaa-tcagtcagtaatgtggcttaagcccccactcagcttacagtcacta 193
            ||||||||||||| ||||||  ||||||||||||||||||||||||||||||| ||||||
Sbjct: 3567 gtagaaaggaaaaatcagtcgataatgtggcttaagcccccactcagcttacaatcacta 3508

                                                                        
Query: 194  atgcaactcatgacttgtcagtcgatcaggcatgaccaaccacaagatcatgtgaacaca 253
            |||| ||||||||| ||||||||||||  |||||||||||||||||||||||| ||| ||
Sbjct: 3507 atgcgactcatgacatgtcagtcgatccagcatgaccaaccacaagatcatgtaaacgca 3448

                                                                        
Query: 254  gatgaagcgcttcttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtca 313
            || | |||||||||||||||||||||||| |||||||| |||||||||||||||||||| 
Sbjct: 3447 gaaggagcgcttcttcagcggaagtagaccgacacaagtgggatgtcgacatcgttgtcg 3388

                                   
Query: 314  tcgtcatcctcacaggccaccac 336
            |||||||||||||||||||||||
Sbjct: 3387 tcgtcatcctcacaggccaccac 3365
to top
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds
          Length = 3586

 Score =  174 bits (88), Expect = 1e-40
 Identities = 150/169 (88%), Gaps = 10/169 (5%)
 Strand = Plus / Minus

                                                                        
Query: 21   caattttagttgtaaacgcatcatgcaaca--------gatgatgttgtgcgt-gtcttg 71
            ||||||||| ||||||||||||||||||||        ||||||||||||| | |||| |
Sbjct: 3571 caattttagctgtaaacgcatcatgcaacaattatcaagatgatgttgtgcctagtctcg 3512

                                                                        
Query: 72   tgaatcgtgatgtctggtaacaactccagatcagcccccaatgatccaatcgacatcga- 130
            |||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||| | 
Sbjct: 3511 tgaatcatgatgtctggtaacaacccgagatcagcccccaatgatccgatcgacatcaaa 3452

                                                             
Query: 131  gatggtagaaaggaaaatcagtcagtaatgtggcttaagcccccactca 179
            ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3451 gatggtagaaaggaaaatcagtcggtaatgtggcttaagcccccactca 3403



 Score =  163 bits (82), Expect = 5e-37
 Identities = 118/130 (90%)
 Strand = Plus / Minus

                                                                        
Query: 211  tcagtcgatcaggcatgaccaaccacaagatcatgtgaacacagatgaagcgcttcttca 270
            ||||| ||||| |||||||||||||||||||||| | ||| |||| | ||||||||||||
Sbjct: 3395 tcagtagatcaagcatgaccaaccacaagatcatttaaacgcagaaggagcgcttcttca 3336

                                                                        
Query: 271  gcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggc 330
            |||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| ||
Sbjct: 3335 gcggaagtagaccgacacaagtgggatgtcgacatcattgtcgtcgtcatcctcacacgc 3276

                      
Query: 331  caccacgacg 340
            ||||||||||
Sbjct: 3275 caccacgacg 3266
to top
>gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence
          Length = 836

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 61/65 (93%)
 Strand = Plus / Minus

                                                                       
Query: 272 cggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggcc 331
           |||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 779 cggaagtaaatagacacaagcgggatgtcgacgtcattgtcatcgtcatcctcacaggcc 720

                
Query: 332 accac 336
           |||||
Sbjct: 719 accac 715
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                          
Query: 266    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 325
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209

                         
Query: 326    caggccaccac 336
              || ||||||||
Sbjct: 312210 caagccaccac 312220



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 152    tcagtaatgtggcttaagcccccactcagcttacag 187
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                          
Query: 266    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 325
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107

                         
Query: 326    caggccaccac 336
              || ||||||||
Sbjct: 295108 caagccaccac 295118



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 152    tcagtaatgtggcttaagcccccactcagcttacag 187
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
to top
>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full
            insert sequence
          Length = 3724

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 266  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 325
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 3469 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 3410

                       
Query: 326  caggccaccac 336
            || ||||||||
Sbjct: 3409 caagccaccac 3399



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 152  tcagtaatgtggcttaagcccccactcagcttacag 187
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 3580 tcagtaatgtggcttaaacccccacttagtttacag 3545
to top
>dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I12, full
            insert sequence
          Length = 1533

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 266  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 325
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 1362 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1303

                       
Query: 326  caggccaccac 336
            || ||||||||
Sbjct: 1302 caagccaccac 1292



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 152  tcagtaatgtggcttaagcccccactcagcttacag 187
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 1473 tcagtaatgtggcttaaacccccacttagtttacag 1438
to top
>dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C03, full
            insert sequence
          Length = 1510

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 266  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 325
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 1253 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1194

                       
Query: 326  caggccaccac 336
            || ||||||||
Sbjct: 1193 caagccaccac 1183



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 152  tcagtaatgtggcttaagcccccactcagcttacag 187
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 1364 tcagtaatgtggcttaaacccccacttagtttacag 1329
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                          
Query: 266    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 325
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107

                         
Query: 326    caggccaccac 336
              || ||||||||
Sbjct: 295108 caagccaccac 295118



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 152    tcagtaatgtggcttaagcccccactcagcttacag 187
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                          
Query: 266    cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 325
              ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209

                         
Query: 326    caggccaccac 336
              || ||||||||
Sbjct: 312210 caagccaccac 312220



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 152    tcagtaatgtggcttaagcccccactcagcttacag 187
              ||||||||||||||||| |||||||| || ||||||
Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
to top
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 266  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 325
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 9945 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 9886

                       
Query: 326  caggccaccac 336
            || ||||||||
Sbjct: 9885 caagccaccac 9875



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 152   tcagtaatgtggcttaagcccccactcagcttacag 187
             ||||||||||||||||| |||||||| || ||||||
Sbjct: 10056 tcagtaatgtggcttaaacccccacttagtttacag 10021
to top
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                         
Query: 266   cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 325
             ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 45201 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 45260

                        
Query: 326   caggccaccac 336
             || ||||||||
Sbjct: 45261 caagccaccac 45271



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 152   tcagtaatgtggcttaagcccccactcagcttacag 187
             ||||||||||||||||| |||||||| || ||||||
Sbjct: 45090 tcagtaatgtggcttaaacccccacttagtttacag 45125
to top
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa
            from chromosome 11 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                        
Query: 266  cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 325
            ||||| ||||||||||  || || || |||||||| || ||||||||||| || ||||||
Sbjct: 2366 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 2425

                       
Query: 326  caggccaccac 336
            || ||||||||
Sbjct: 2426 caagccaccac 2436



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 152  tcagtaatgtggcttaagcccccactcagcttacag 187
            ||||||||||||||||| |||||||| || ||||||
Sbjct: 2255 tcagtaatgtggcttaaacccccacttagtttacag 2290
to top
>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds
          Length = 3588

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                        
Query: 270  agcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacagg 329
            |||||||||| || ||||| || ||||||||||| ||||| || || || ||||| ||||
Sbjct: 3345 agcggaagtaaaccgacacgagggggatgtcgacgtcgttctcgtcctcgtcctcgcagg 3286

                
Query: 330  ccac 333
            ||||
Sbjct: 3285 ccac 3282
to top
>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110
            (ATUBA1) mRNA, complete cds
          Length = 3626

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 274  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 333
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3360 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3301

               
Query: 334  cac 336
            |||
Sbjct: 3300 cac 3298
to top
>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete
             sequence
          Length = 83796

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 274   gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 333
             |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 53002 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 52943

                
Query: 334   cac 336
             |||
Sbjct: 52942 cac 52940
to top
>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds
          Length = 3561

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 274  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 333
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3321 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3262

               
Query: 334  cac 336
            |||
Sbjct: 3261 cac 3259
to top
>dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin activating enzyme,
           complete cds, clone: RAFL22-01-B01
          Length = 474

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 274 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 333
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 208 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 149

              
Query: 334 cac 336
           |||
Sbjct: 148 cac 146
to top
>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds
          Length = 3243

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 274  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 333
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3237 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3178

               
Query: 334  cac 336
            |||
Sbjct: 3177 cac 3175
to top
>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene,
            complete cds
          Length = 3346

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 274  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 333
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 3334 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3275

               
Query: 334  cac 336
            |||
Sbjct: 3274 cac 3272
to top
>emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL1ZD10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 646

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 274 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 333
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 390 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 331

              
Query: 334 cac 336
           |||
Sbjct: 330 cac 328
to top
>emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH43ZE11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1375

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 274  gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 333
            |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 1167 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 1108

               
Query: 334  cac 336
            |||
Sbjct: 1107 cac 1105
to top
>emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH16ZF09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 930

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                       
Query: 274 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 333
           |||||||| ||| || || || || ||||| || |||||||| ||||||||||| |||||
Sbjct: 673 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 614

              
Query: 334 cac 336
           |||
Sbjct: 613 cac 611
to top
>emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiquitin activating enzyme E1
           (ORF), clone CanUBC-1
          Length = 807

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 308 ttgtcatcgtcatcctcacaggccac 333
           ||||||||||||||||| ||||||||
Sbjct: 484 ttgtcatcgtcatcctcgcaggccac 459
to top
>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence
          Length = 194380

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    acatcgttgtcatcgtcatc 321
              ||||||||||||||||||||
Sbjct: 158321 acatcgttgtcatcgtcatc 158340
to top
>ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM01632.1) partial mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 298 gtcgacatcgttgtcatcgtcatc 321
           |||| |||||||||||||||||||
Sbjct: 585 gtcgtcatcgttgtcatcgtcatc 562
to top
>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 68      cttgtgaatcgtgatgtctg 87
               ||||||||||||||||||||
Sbjct: 2258336 cttgtgaatcgtgatgtctg 2258355
to top
>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 68      cttgtgaatcgtgatgtctg 87
               ||||||||||||||||||||
Sbjct: 2109514 cttgtgaatcgtgatgtctg 2109533
to top
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 256     tgaagcgcttcttcagcgga 275
               ||||||||||||||||||||
Sbjct: 1983686 tgaagcgcttcttcagcgga 1983705
to top
>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189286

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 129    gagatggtagaaaggaaaat 148
              ||||||||||||||||||||
Sbjct: 153914 gagatggtagaaaggaaaat 153933
to top
>gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite sequence
          Length = 254

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 298 gtcgacatcgttgtcatcgtcatcctca 325
           |||| |||||| ||||||||||||||||
Sbjct: 231 gtcgtcatcgtcgtcatcgtcatcctca 204
to top
>emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragment, clone 19b9, forward
           read cpg19b9.ft1a
          Length = 264

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 138 gaaaggaaaatcagtcagta 157
           ||||||||||||||||||||
Sbjct: 169 gaaaggaaaatcagtcagta 188
to top
>emb|AM236324.1| Escherichia coli genome fragment containing the yersiniabactin, cob and
             pdu gene clusters, strain A0 34/86
          Length = 84189

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    cttgtgaatcgtgatgtctg 87
             ||||||||||||||||||||
Sbjct: 54791 cttgtgaatcgtgatgtctg 54810


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,462,308
Number of Sequences: 3902068
Number of extensions: 2462308
Number of successful extensions: 46910
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46764
Number of HSP's gapped (non-prelim): 142
length of query: 340
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 318
effective length of database: 17,147,199,772
effective search space: 5452809527496
effective search space used: 5452809527496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top