ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl13h05 |
|---|---|
| Clone Library Name | barley_pub |
>S6A18_HUMAN (Q96N87) Sodium- and chloride-dependent transporter XTRP2 (Solute| carrier family 6 member 18) Length = 628 Score = 32.7 bits (73), Expect = 0.23 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = -2 Query: 293 RPNFIQTSAEGSWILFVWYN------AYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLST 132 R F++ S + + WY A I ++W +IC+AA W + + I+ + T Sbjct: 145 RTGFVEECQGSSAVSYFWYRQTLNITADINDSGSIQWWLLICLAASWAVVYMCVIRGIET 204 Query: 131 ENHVVW 114 V++ Sbjct: 205 TGKVIY 210
>S6A19_PONPY (Q5R6J1) Sodium-dependent neutral amino acid transporter B(0)| (System B(0) neutral amino acid transporter) (B(0)AT1) (Solute carrier family 6 member 19) Length = 634 Score = 32.0 bits (71), Expect = 0.38 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Frame = -2 Query: 284 FIQTSAEGSWILFVWY------NAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 123 ++ A S + + WY + I ++W ++C+A W+ L + I+ + T Sbjct: 162 YVDECARSSPVDYFWYRETLNISTSISDSGSIQWRMLLCLACAWSVLYMCTIRGIETTGK 221 Query: 122 VVWL 111 VV++ Sbjct: 222 VVYI 225
>S6A18_RAT (Q62687) Sodium- and chloride-dependent transporter XTRP2 (Solute| carrier family 6 member 18) (Renal osmotic stress-induced Na-Cl organic solute cotransporter) (ROSIT) Length = 615 Score = 31.6 bits (70), Expect = 0.50 Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = -2 Query: 293 RPNFIQTSAEGSWILFVWYN------AYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLST 132 R F+Q + + WY + I + ++W +C+ A WT++ + I+ + + Sbjct: 144 RTGFVQECQSSGTVSYFWYRQTLNITSDISNTGTIQWKLFLCLVACWTTVYLCVIRGIES 203 Query: 131 ENHVVW 114 V++ Sbjct: 204 TGKVIY 209
>S6A19_MOUSE (Q9D687) Sodium-dependent neutral amino acid transporter B(0)| (System B(0) neutral amino acid transporter) (B(0)AT1) (Solute carrier family 6 member 19) Length = 634 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/64 (18%), Positives = 30/64 (46%), Gaps = 6/64 (9%) Frame = -2 Query: 284 FIQTSAEGSWILFVWY------NAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 123 +++ A+ S + + WY + I ++W ++C+ W+ L + I+ + T Sbjct: 162 YVEECAKSSSVDYFWYRETLNISTSISDSGSIQWWILLCLTCAWSVLYVCIIRGIETTGK 221 Query: 122 VVWL 111 V++ Sbjct: 222 AVYI 225
>S6A19_HUMAN (Q695T7) Sodium-dependent neutral amino acid transporter B(0)| (System B(0) neutral amino acid transporter) (B(0)AT1) (Solute carrier family 6 member 19) Length = 634 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Frame = -2 Query: 284 FIQTSAEGSWILFVWY------NAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 123 ++ A S + + WY + I ++W ++C+A W+ L + I+ + T Sbjct: 162 YVDECARSSPVDYFWYRETLNISTSISDSGSIQWWMLLCLACAWSVLYMCTIRGIETTGK 221 Query: 122 VVWL 111 V++ Sbjct: 222 AVYI 225
>S6A18_MOUSE (O88576) Sodium- and chloride-dependent transporter XTRP2 (Solute| carrier family 6 member 18) Length = 615 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = -2 Query: 293 RPNFIQTSAEGSWILFVWYN------AYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLST 132 R F+Q + + WY + I + ++W +C+ A W+++ + I+ + + Sbjct: 144 RTGFVQECQSSGTVSYFWYRQTLNITSDISNTGTIQWKLFLCLVACWSTVYLCVIRGIES 203 Query: 131 ENHVVW 114 V++ Sbjct: 204 TGKVIY 209
>SERC_MYCTU (P63514) Putative phosphoserine aminotransferase (EC 2.6.1.52)| (PSAT) Length = 376 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +3 Query: 234 IVPNKQDPTSLSRGLDKIGTKPSRIQHHQLQSMTALAA 347 + P+ + PT++ + G+ PS+++ QLQ++T AA Sbjct: 5 LTPHLEIPTAIKPRDGRFGSGPSKVRLEQLQTLTTTAA 42
>SERC_MYCBO (P63515) Putative phosphoserine aminotransferase (EC 2.6.1.52)| (PSAT) Length = 376 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +3 Query: 234 IVPNKQDPTSLSRGLDKIGTKPSRIQHHQLQSMTALAA 347 + P+ + PT++ + G+ PS+++ QLQ++T AA Sbjct: 5 LTPHLEIPTAIKPRDGRFGSGPSKVRLEQLQTLTTTAA 42
>ADR1_MOUSE (Q91VH1) Adiponectin receptor protein 1| Length = 375 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/47 (25%), Positives = 28/47 (59%) Frame = -2 Query: 263 GSWILFVWYNAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 123 GS++ +++Y+ Y P+L +L I+CV + +++ + + +T H Sbjct: 218 GSFVPWLYYSFYCSPQPRLIYLSIVCVLGI-SAIIVAQWDRFATPKH 263
>ADR1_HUMAN (Q96A54) Adiponectin receptor protein 1 (Progestin and adipoQ| receptor family member I) Length = 375 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/47 (25%), Positives = 28/47 (59%) Frame = -2 Query: 263 GSWILFVWYNAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENH 123 GS++ +++Y+ Y P+L +L I+CV + +++ + + +T H Sbjct: 218 GSFVPWLYYSFYCSPQPRLIYLSIVCVLGI-SAIIVAQWDRFATPKH 263
>LIMK1_XENLA (O42565) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) (xLIMK1)| Length = 615 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 12/66 (18%) Frame = +3 Query: 36 CGRFSVDDCFMYQL---WYRD---------ALAAWWRQPHNMIFCR*LFYINYGKRCPNC 179 CG+ D C++ L W+ D +L+ + + +FC+ ++ +G C C Sbjct: 29 CGQSIYDGCYLQALALDWHSDCFRCSDCGVSLSHRYYEKDGRLFCKKHYWTRFGGMCQGC 88 Query: 180 SHTNDK 197 S K Sbjct: 89 SENITK 94
>GUN_SALTI (Q8Z289) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) (Carboxymethylcellulase) (CMCase) Length = 369 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -3 Query: 274 PLLREVGSCLFGTMPT*DHFPSSDGYLSFVWLQFG 170 P L+ G+ DHFP SD Y ++V FG Sbjct: 307 PFLQNRGAQAVQRQRVADHFPGSDAYYNYVLTLFG 341
>YEEF_ECOLI (P0AA47) Inner membrane transport protein yeeF| Length = 452 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/43 (23%), Positives = 24/43 (55%) Frame = -2 Query: 245 VWYNAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENHVV 117 +++ A + S P W+F++ + A T+ + +K ++ N V+ Sbjct: 119 IYFEALVPSIPS--WMFVVALVAFMTAFNLRSLKSVANFNTVI 159
>YEEF_ECO57 (P0AA48) Inner membrane transport protein yeeF| Length = 452 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/43 (23%), Positives = 24/43 (55%) Frame = -2 Query: 245 VWYNAYIGSFPKLRWLFIICVAAVWTSLTIVDIKQLSTENHVV 117 +++ A + S P W+F++ + A T+ + +K ++ N V+ Sbjct: 119 IYFEALVPSIPS--WMFVVALVAFMTAFNLRSLKSVANFNTVI 159
>SYV_UREPA (Q9PQM4) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 874 Score = 27.7 bits (60), Expect = 7.3 Identities = 9/27 (33%), Positives = 14/27 (51%) Frame = +3 Query: 54 DDCFMYQLWYRDALAAWWRQPHNMIFC 134 D C QLW+ + W+ + N I+C Sbjct: 404 DWCISRQLWWGHQIPVWYHKKTNQIYC 430
>LIM_HALRO (Q25132) LIM/homeobox protein LIM (HRLIM)| Length = 514 Score = 27.3 bits (59), Expect = 9.5 Identities = 8/22 (36%), Positives = 14/22 (63%) Frame = +3 Query: 120 NMIFCR*LFYINYGKRCPNCSH 185 N++FC+ F+ +G +C C H Sbjct: 325 NLVFCKDDFFKRFGTKCTACGH 346
>UL31_HHV6U (P28865) Protein U37| Length = 264 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 2/31 (6%) Frame = +1 Query: 19 NVMLDIVEDFL*MTVLC--INYGTGMHLQLG 105 NV LDI+++ + +TVLC ++ T +H+ +G Sbjct: 204 NVYLDILQESVILTVLCETLDTNTNIHIDIG 234 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,181,493 Number of Sequences: 219361 Number of extensions: 1133635 Number of successful extensions: 2508 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2464 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2508 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
