ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl13h03 |
|---|---|
| Clone Library Name | barley_pub |
>PHS_YEAST (P38744) Putative pterin-4-alpha-carbinolamine dehydratase (EC| 4.2.1.96) (PHS) (4-alpha-hydroxy-tetrahydropterin dehydratase) (Pterin carbinolamine dehydratase) (PCD) Length = 120 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +1 Query: 139 MGFDLDVYYNLYRGDQA*LNRISIQTHKHAIHPTIHISTT 258 +G +V + Y A L R+S+++H HP IH S T Sbjct: 40 LGITREVTFKDYETTWAFLTRVSMRSHLWGHHPLIHTSYT 79
>ENO2_CHLTE (Q8KG25) Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2)| (2-phospho-D-glycerate hydro-lyase 2) Length = 437 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +2 Query: 68 AEHKRFPYKKVQGREITEVRIQSLWA 145 AE K++ +KK GRE++ + S WA Sbjct: 260 AEKKKYVFKKSSGRELSSEEMASYWA 285
>T7L1A_BRARE (Q9YHE8) Transcription factor 7-like 1-A (HMG box transcription| factor 3-A) (TCF-3-A) (TCF-3) (zTcf-3) (Protein headless) Length = 560 Score = 27.7 bits (60), Expect = 7.5 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +1 Query: 196 NRISIQTHKHAIHPTIHISTTTNEH 270 N++ + H H +HP + T +NEH Sbjct: 159 NKVPVVQHPHHVHPLTPLITYSNEH 183
>TF7L2_HUMAN (Q9NQB0) Transcription factor 7-like 2 (HMG box transcription| factor 4) (T-cell-specific transcription factor 4) (TCF-4) (hTCF-4) Length = 619 Score = 27.7 bits (60), Expect = 7.5 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +1 Query: 196 NRISIQTHKHAIHPTIHISTTTNEH 270 N++ + H H +HP + T +NEH Sbjct: 186 NKVPVVQHPHHVHPLTPLITYSNEH 210
>VCAP_SHV21 (Q00999) Major capsid protein (MCP)| Length = 1371 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +1 Query: 154 DVYYNLYRGDQA*LNRISIQTHKHAIHPTIHISTTTNEHP 273 D Y N + L + S+ TH+ +HPT H T HP Sbjct: 495 DYYDNKHVAHVHSLAQKSMMTHEEVLHPTNHEILRTEVHP 534
>TF7L2_MOUSE (Q924A0) Transcription factor 7-like 2 (HMG box transcription| factor 4) (T-cell-specific transcription factor 4) (TCF-4) (mTCF-4) Length = 459 Score = 27.7 bits (60), Expect = 7.5 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +1 Query: 196 NRISIQTHKHAIHPTIHISTTTNEH 270 N++ + H H +HP + T +NEH Sbjct: 163 NKVPVVQHPHHVHPLTPLITYSNEH 187
>VCAP_HHV6U (P17887) Major capsid protein (MCP)| Length = 1345 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -3 Query: 115 NLPALNLFIRKTLVFCRLMCADIICLHCHLIKHDHAV 5 NLP F K V R+ ADI+ CH I HD + Sbjct: 423 NLPTSVFFHNKDQVVQRIDFADILPSVCHPIVHDSTI 459
>HXD13_MOUSE (P70217) Homeobox protein Hox-D13 (Hox-4.8)| Length = 339 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +2 Query: 29 MAVQADDVCTHQSAEHKRFPYKKVQGREI 115 +A+ D+C ++ KR PY K+Q +E+ Sbjct: 259 VALNQPDMCVYRRGRKKRVPYTKLQLKEL 287
>HXD13_HUMAN (P35453) Homeobox protein Hox-D13 (Hox-4I)| Length = 335 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +2 Query: 29 MAVQADDVCTHQSAEHKRFPYKKVQGREI 115 +A+ D+C ++ KR PY K+Q +E+ Sbjct: 255 VALNQPDMCVYRRGRKKRVPYTKLQLKEL 283
>HXD13_CARPS (Q5EU41) Homeobox protein Hox-D13| Length = 333 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = +2 Query: 29 MAVQADDVCTHQSAEHKRFPYKKVQGREI 115 +A+ D+C ++ KR PY K+Q +E+ Sbjct: 253 VALNQPDMCVYRRGRKKRVPYTKLQLKEL 281
>YPDA_ECOLI (P0AA93) Inner membrane protein ypdA| Length = 565 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +1 Query: 199 RISIQTHKHAIHPTIHISTTTNEHPVRKKSLQNFHH 306 RI+++ H I P + NE P K L N HH Sbjct: 490 RIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHH 525
>YPDA_ECO57 (P0AA94) Inner membrane protein ypdA| Length = 565 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +1 Query: 199 RISIQTHKHAIHPTIHISTTTNEHPVRKKSLQNFHH 306 RI+++ H I P + NE P K L N HH Sbjct: 490 RIAVRDTGHGIDPKVIERVEANEMPGNKIGLLNVHH 525
>VAMP1_RAT (Q63666) Vesicle-associated membrane protein 1 (VAMP-1)| (Synaptobrevin-1) Length = 118 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%) Frame = -2 Query: 305 WWKFCRLFFLTG--CSLVVVEICI 240 WWK C++ + G C+++VV I I Sbjct: 91 WWKNCKMMIMLGAICAIIVVVIVI 114
>VAMP1_MOUSE (Q62442) Vesicle-associated membrane protein 1 (VAMP-1)| (Synaptobrevin-1) Length = 118 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%) Frame = -2 Query: 305 WWKFCRLFFLTG--CSLVVVEICI 240 WWK C++ + G C+++VV I I Sbjct: 91 WWKNCKMMIMLGAICAIIVVVIVI 114
>VAMP1_HUMAN (P23763) Vesicle-associated membrane protein 1 (VAMP-1)| (Synaptobrevin-1) Length = 118 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%) Frame = -2 Query: 305 WWKFCRLFFLTG--CSLVVVEICI 240 WWK C++ + G C+++VV I I Sbjct: 91 WWKNCKMMIMLGAICAIIVVVIVI 114
>MCM7_SCHPO (O75001) DNA replication licensing factor mcm7 (Minichromosome| maintenance protein 7) Length = 760 Score = 27.3 bits (59), Expect = 9.8 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 18/84 (21%) Frame = +2 Query: 71 EHKRFPYKKVQGRE--------------ITEVRIQSLWALISTFTI-TCTEEIKPNLTGS 205 EHK FP + +G + + ++R ++L +L++ I T T ++KP+LT + Sbjct: 142 EHKGFPPELTRGYDLYFRPVTRNKKPFSVRDLRGENLGSLLTVRGIVTRTSDVKPSLTVN 201 Query: 206 AYKLTSTLYTLQYIFQQ---LPMS 268 AY Y + +Q LPMS Sbjct: 202 AYTCDRCGYEVFQEIRQKTFLPMS 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,008,788 Number of Sequences: 219361 Number of extensions: 817977 Number of successful extensions: 2155 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2155 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
