ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATE_BRUSU (P63647) Putative arginyl-tRNA--protein transferase (E... 33 0.23
2ATE_BRUME (P63646) Putative arginyl-tRNA--protein transferase (E... 33 0.23
3HUT1_KLULA (Q6CR04) UDP-galactose transporter homolog 1 29 3.3
4G3ST2_PIG (Q6XQG9) Galactose 3-O-sulfotransferase 2 (EC 2.8.2.-)... 28 4.3
5PLCG1_HUMAN (P19174) 1-phosphatidylinositol-4,5-bisphosphate pho... 28 7.4
6PLCG1_BOVIN (P08487) 1-phosphatidylinositol-4,5-bisphosphate pho... 28 7.4
7MYLK_MOUSE (Q6PDN3) Myosin light chain kinase, smooth muscle and... 28 7.4

>ATE_BRUSU (P63647) Putative arginyl-tRNA--protein transferase (EC 2.3.2.8)|
           (R-transferase) (Arginyltransferase)
          Length = 249

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
 Frame = +2

Query: 20  FLTCHIQSNCLDPYMVVTHVCGVQGA------FGYWMQ-------PVRDGSTNHVQPNGW 160
           F + H+Q   L  YM++ H+   + A       GYW++        +R     H+ P GW
Sbjct: 185 FFSPHMQERSLGTYMILDHIERARAAGLPHVYLGYWVEGSRKMQYKIRFTPQEHLGPRGW 244

Query: 161 QQ 166
           Q+
Sbjct: 245 QR 246



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>ATE_BRUME (P63646) Putative arginyl-tRNA--protein transferase (EC 2.3.2.8)|
           (R-transferase) (Arginyltransferase)
          Length = 249

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
 Frame = +2

Query: 20  FLTCHIQSNCLDPYMVVTHVCGVQGA------FGYWMQ-------PVRDGSTNHVQPNGW 160
           F + H+Q   L  YM++ H+   + A       GYW++        +R     H+ P GW
Sbjct: 185 FFSPHMQERSLGTYMILDHIERARAAGLPHVYLGYWVEGSRKMQYKIRFTPQEHLGPRGW 244

Query: 161 QQ 166
           Q+
Sbjct: 245 QR 246



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>HUT1_KLULA (Q6CR04) UDP-galactose transporter homolog 1|
          Length = 339

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 215 KIWPRMACNFHLFF*AFVFQLNLALYLNLFVYIKW 319
           ++WP   C F + +   + Q  +A+   L +YIKW
Sbjct: 32  RVWPNSGCTFQVPYIVALVQATIAMICGL-IYIKW 65



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>G3ST2_PIG (Q6XQG9) Galactose 3-O-sulfotransferase 2 (EC 2.8.2.-) (Gal3ST-2)|
           (Galbeta1-3GalNAc 3'-sulfotransferase 2)
           (Beta-galactose-3-O-sulfotransferase 2)
          Length = 398

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 79  LRSPGSVWLLDATGERRQHKPCSTEW 156
           LRSPGSV  L   G+ R  + C+ +W
Sbjct: 256 LRSPGSVTSLTPEGQERAKRWCALDW 281



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>PLCG1_HUMAN (P19174) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
            gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
            (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
            (PLC-148)
          Length = 1290

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 15   NNFLHVIYKAIAWIRTWSLLTSAESRERLVTGCNR*ETAAQTMFNRMDGSKL 170
            NN L V   ++A +  WSL  +A+S+E L     +    AQT   R+   K+
Sbjct: 891  NNRLFVFSISMASVAHWSLDVAADSQEELQDWVKKIREVAQTADARLTEGKI 942



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>PLCG1_BOVIN (P08487) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
            gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
            (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
            (PLC-148)
          Length = 1291

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 15   NNFLHVIYKAIAWIRTWSLLTSAESRERLVTGCNR*ETAAQTMFNRMDGSKL 170
            NN L V   ++A +  WSL  +A+S+E L     +    AQT   R+   K+
Sbjct: 891  NNRLFVFSISMASVAHWSLDVAADSQEELQDWVKKIREVAQTADARLTEGKM 942



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>MYLK_MOUSE (Q6PDN3) Myosin light chain kinase, smooth muscle and non-muscle|
           isozymes (EC 2.7.11.18) (MLCK) [Contains: Telokin
           (Kinase-related protein) (KRP)]
          Length = 1941

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 186 RHHSLRLIWPRYGQGW 233
           RH +LR  WP  GQGW
Sbjct: 833 RHGTLRPCWPARGQGW 848


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,282,299
Number of Sequences: 219361
Number of extensions: 1025771
Number of successful extensions: 2149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2149
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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