ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 262 5e-67
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 60 4e-06
3gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.059
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.059
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.92
6emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.92
7emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 42 0.92
8gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 42 0.92
9emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.92
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
11dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.92
12gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partia... 40 3.6 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  262 bits (132), Expect = 5e-67
 Identities = 148/153 (96%), Gaps = 4/153 (2%)
 Strand = Plus / Minus

                                                                        
Query: 19   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 78
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 79   agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 134
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                             
Query: 135  cttaattattcatgcaccggcacaactttctgt 167
            ||||||||||||||||||||||||||| |||||
Sbjct: 2776 cttaattattcatgcaccggcacaactctctgt 2744



 Score =  172 bits (87), Expect = 4e-40
 Identities = 93/95 (97%)
 Strand = Plus / Minus

                                                                        
Query: 184  agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 243
            ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                               
Query: 244  gtgctcagatcagatggatatgctgttcgggatgc 278
            |||||||||||||||||||||||||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgc 2633
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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 12   catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 61
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 94   ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 138
            ||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 126    ccttattgccttaattattcatg 148
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 126   ccttattgccttaattattcatg 148
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 126      ccttattgccttaattattcatg 148
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 126      ccttattgccttaattattcatg 148
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 250      agatcagatggatatgctgttcgggatgc 278
                |||||||||||| |||||||| |||||||
Sbjct: 30026452 agatcagatggagatgctgttggggatgc 30026424
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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 33    aaacaagggattttttctgca 53
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585
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>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 250  agatcagatggatatgctgttcgggatgc 278
            |||||||||||| |||||||| |||||||
Sbjct: 2698 agatcagatggagatgctgttggggatgc 2670
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 250   agatcagatggatatgctgttcgggatgc 278
             |||||||||||| |||||||| |||||||
Sbjct: 81299 agatcagatggagatgctgttggggatgc 81327
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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 30    gcaaaacaagggattttttct 50
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 250      agatcagatggatatgctgttcgggatgc 278
                |||||||||||| |||||||| |||||||
Sbjct: 30117874 agatcagatggagatgctgttggggatgc 30117846
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>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 250  agatcagatggatatgctgttcgggatgc 278
            |||||||||||| |||||||| |||||||
Sbjct: 2731 agatcagatggagatgctgttggggatgc 2703
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>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds
          Length = 1814

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 251  gatcagatggatatgctgttcgggatgc 278
            ||||||||||| |||||||| |||||||
Sbjct: 1558 gatcagatggagatgctgttggggatgc 1531


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,704,774
Number of Sequences: 3902068
Number of extensions: 1704774
Number of successful extensions: 29308
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29257
Number of HSP's gapped (non-prelim): 50
length of query: 278
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 256
effective length of database: 17,147,199,772
effective search space: 4389683141632
effective search space used: 4389683141632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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