ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL24_MYCGE (P47408) 50S ribosomal protein L24 29 2.5
2NK2R_CAVPO (Q64077) Substance-K receptor (SKR) (Neurokinin A rec... 28 7.3

>RL24_MYCGE (P47408) 50S ribosomal protein L24|
          Length = 108

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 171 SKITLHTNNQTNRRNHITRITVNLQAFPITKINLFLQ 281
           +K+T+H   Q N+R+  T  T      P+ K+ LF Q
Sbjct: 40  NKVTVHKKEQVNKRSKQTNPTTKEAPLPLNKLALFDQ 76



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>NK2R_CAVPO (Q64077) Substance-K receptor (SKR) (Neurokinin A receptor) (NK-2|
           receptor) (NK-2R) (Tachykinin receptor 2)
          Length = 402

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 238 LTVILVIWLRRFV*LFVCKVILLVTVW--LLGSFVDYGKCLSYFNLSFQPVKCLLLPAQS 65
           L VI++I+L     +FV   I+ +T+W   +     +G  L +     + VK ++L   +
Sbjct: 199 LVVIVLIYLLPLTVMFVAYSIIGLTLWRRAVPRHQAHGANLRHLQAKKKFVKTMVLVVVT 258

Query: 64  LRICW 50
             ICW
Sbjct: 259 FAICW 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,597,886
Number of Sequences: 219361
Number of extensions: 918265
Number of successful extensions: 1610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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