ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.75
2dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic D... 40 0.75
3gb|AC140247.3| Mus musculus BAC clone RP23-469I15 from chromosom... 38 3.0
4gb|DQ175821.1| Hordeum vulgare clone DsB11 Ds insertion site fla... 38 3.0
5gb|AC127318.4| Mus musculus BAC clone RP23-228J12 from chromosom... 38 3.0
6emb|CR932961.2| Medicago truncatula chromosome 5 clone mth2-62c4... 38 3.0
7emb|AL133552.8| Human DNA sequence from clone RP11-67B16 on chro... 38 3.0
8gb|AY946225.1| Hordeum vulgare subsp. vulgare 5' flanking sequen... 38 3.0
9emb|AL161665.5|CNS01RH9 Human chromosome 14 DNA sequence BAC R-4... 38 3.0
10gb|AC132834.4| Homo sapiens chromosome 8, clone CTD-2344M9, comp... 38 3.0

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 9       aaaaatcattctcattcaca 28
               ||||||||||||||||||||
Sbjct: 1053708 aaaaatcattctcattcaca 1053689



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>dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1005_B05
          Length = 144799

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     aaaaatcattctcattcaca 28
             ||||||||||||||||||||
Sbjct: 82235 aaaaatcattctcattcaca 82216



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>gb|AC140247.3| Mus musculus BAC clone RP23-469I15 from chromosome 9, complete sequence
          Length = 189336

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     actaaagctttgagctatt 46
              |||||||||||||||||||
Sbjct: 157483 actaaagctttgagctatt 157501



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>gb|DQ175821.1| Hordeum vulgare clone DsB11 Ds insertion site flanking region
           genomic sequence
          Length = 950

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 33  agctttgagctattgttac 51
           |||||||||||||||||||
Sbjct: 224 agctttgagctattgttac 206



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>gb|AC127318.4| Mus musculus BAC clone RP23-228J12 from chromosome 9, complete sequence
          Length = 168789

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    actaaagctttgagctatt 46
             |||||||||||||||||||
Sbjct: 35836 actaaagctttgagctatt 35854



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>emb|CR932961.2| Medicago truncatula chromosome 5 clone mth2-62c4, COMPLETE SEQUENCE
          Length = 119142

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 8     aaaaaatcattctcattcacact 30
             ||||||||||||||||| |||||
Sbjct: 67783 aaaaaatcattctcattaacact 67761



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>emb|AL133552.8| Human DNA sequence from clone RP11-67B16 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 80955

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     gaggaaaaaatcattctca 22
             |||||||||||||||||||
Sbjct: 50902 gaggaaaaaatcattctca 50920



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>gb|AY946225.1| Hordeum vulgare subsp. vulgare 5' flanking sequence from Ds
           insertion in TNP-30
          Length = 753

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 33  agctttgagctattgttac 51
           |||||||||||||||||||
Sbjct: 151 agctttgagctattgttac 169



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>emb|AL161665.5|CNS01RH9 Human chromosome 14 DNA sequence BAC R-431H16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 172993

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     aaaaaatcattctcattca 26
             |||||||||||||||||||
Sbjct: 97500 aaaaaatcattctcattca 97518



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>gb|AC132834.4| Homo sapiens chromosome 8, clone CTD-2344M9, complete sequence
          Length = 156318

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 2      gggaggaaaaaatcattct 20
              |||||||||||||||||||
Sbjct: 105051 gggaggaaaaaatcattct 105033


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 668,490
Number of Sequences: 3902068
Number of extensions: 668490
Number of successful extensions: 43089
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43064
Number of HSP's gapped (non-prelim): 25
length of query: 74
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 53
effective length of database: 17,151,101,840
effective search space: 909008397520
effective search space used: 909008397520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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