ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DHSU_CHRVI (Q06530) Sulfide dehydrogenase [flavocytochrome c] fl... 33 0.24
2MUG1_MOUSE (P28665) Murinoglobulin-1 precursor (MuG1) 32 0.40
3ZN622_CHICK (Q90Y35) Zinc finger protein 622 (Zn-finger protein ... 27 10.0

>DHSU_CHRVI (Q06530) Sulfide dehydrogenase [flavocytochrome c] flavoprotein|
           chain precursor (EC 1.8.2.-) (FC) (FCSD)
           (Flavocytochrome c flavoprotein subunit)
          Length = 431

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 21  YKGIHELQQPCILNHRPSSGWQAERQGELS 110
           +KGIH +   CI N  P SG+ A  QG+++
Sbjct: 316 HKGIHVIGDACIANPMPKSGYSANSQGKVA 345



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>MUG1_MOUSE (P28665) Murinoglobulin-1 precursor (MuG1)|
          Length = 1476

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 236 DHSVSSFCSYM*CCIWMHLRASHVTFSVYTMSK 138
           +H     CSY  C    H  A HV ++VY++SK
Sbjct: 414 NHKEEDSCSYFYCMEERHASAKHVAYAVYSLSK 446



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>ZN622_CHICK (Q90Y35) Zinc finger protein 622 (Zn-finger protein C47)|
          Length = 405

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 162 LFCLHHEQAYVVALSWVKRVHLVSLPATHWMVD 64
           LFC HH +  +  ++ + +VH   +P   ++VD
Sbjct: 247 LFCSHHSRTLMKNVAHMTKVHSFFIPDIEYLVD 279


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,144,696
Number of Sequences: 219361
Number of extensions: 864487
Number of successful extensions: 1800
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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