Clone Name | rbastl13g04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14, complete sequence Length = 159035 Score = 73.8 bits (37), Expect = 2e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 194 ctgctacctgttggagaagatggcctccaaatccttgtacagcgccttggacttgggcct 253 ||||||||||||||||||||||||||| | ||||||||| || |||||||||||| || Sbjct: 23446 ctgctacctgttggagaagatggcctcaagatccttgtagagtcccttggacttggagct 23505 Query: 254 ccact 258 ||||| Sbjct: 23506 ccact 23510
>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03, complete sequence Length = 45160 Score = 73.8 bits (37), Expect = 2e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 194 ctgctacctgttggagaagatggcctccaaatccttgtacagcgccttggacttgggcct 253 ||||||||||||||||||||||||||| | ||||||||| || |||||||||||| || Sbjct: 17844 ctgctacctgttggagaagatggcctcaagatccttgtagagtcccttggacttggagct 17785 Query: 254 ccact 258 ||||| Sbjct: 17784 ccact 17780
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 2e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 194 ctgctacctgttggagaagatggcctccaaatccttgtacagcgccttggacttgggcct 253 ||||||||||||||||||||||||||| | ||||||||| || |||||||||||| || Sbjct: 29375421 ctgctacctgttggagaagatggcctcaagatccttgtagagtcccttggacttggagct 29375480 Query: 254 ccact 258 ||||| Sbjct: 29375481 ccact 29375485
>dbj|AK100617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108C21, full insert sequence Length = 2945 Score = 73.8 bits (37), Expect = 2e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 194 ctgctacctgttggagaagatggcctccaaatccttgtacagcgccttggacttgggcct 253 ||||||||||||||||||||||||||| | ||||||||| || |||||||||||| || Sbjct: 2824 ctgctacctgttggagaagatggcctcaagatccttgtagagtcccttggacttggagct 2765 Query: 254 ccact 258 ||||| Sbjct: 2764 ccact 2760
>dbj|AK067256.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097I21, full insert sequence Length = 3853 Score = 73.8 bits (37), Expect = 2e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 194 ctgctacctgttggagaagatggcctccaaatccttgtacagcgccttggacttgggcct 253 ||||||||||||||||||||||||||| | ||||||||| || |||||||||||| || Sbjct: 3716 ctgctacctgttggagaagatggcctcaagatccttgtagagtcccttggacttggagct 3657 Query: 254 ccact 258 ||||| Sbjct: 3656 ccact 3652
>emb|AL136096.7| Human DNA sequence from clone RP1-23D17 on chromosome 6q15-16.2 Contains the SPACA1 gene for sperm acrosome associated 1, part of the CNR1 gene for cannabinoid receptor 1 (brain) and a CpG island, complete sequence Length = 112212 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 atgttgcttattctcacttg 173 |||||||||||||||||||| Sbjct: 76751 atgttgcttattctcacttg 76770
>gb|AC079177.21| Homo sapiens Xp BAC RP11-147B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155533 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 ttgtgaataatgctaccaacatta 71 |||||||||| ||||||||||||| Sbjct: 25257 ttgtgaataaagctaccaacatta 25234 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,470,519 Number of Sequences: 3902068 Number of extensions: 2470519 Number of successful extensions: 52302 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52277 Number of HSP's gapped (non-prelim): 25 length of query: 262 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 240 effective length of database: 17,147,199,772 effective search space: 4115327945280 effective search space used: 4115327945280 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)