ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome... 74 2e-10
2gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome... 74 2e-10
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 74 2e-10
4dbj|AK100617.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 2e-10
5dbj|AK067256.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 2e-10
6emb|AL136096.7| Human DNA sequence from clone RP1-23D17 on chrom... 40 3.4
7gb|AC079177.21| Homo sapiens Xp BAC RP11-147B14 (Roswell Park Ca... 40 3.4

>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0030I14, complete sequence
          Length = 159035

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                         
Query: 194   ctgctacctgttggagaagatggcctccaaatccttgtacagcgccttggacttgggcct 253
             ||||||||||||||||||||||||||| | ||||||||| ||  ||||||||||||  ||
Sbjct: 23446 ctgctacctgttggagaagatggcctcaagatccttgtagagtcccttggacttggagct 23505

                  
Query: 254   ccact 258
             |||||
Sbjct: 23506 ccact 23510



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>gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560F03,
             complete sequence
          Length = 45160

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                         
Query: 194   ctgctacctgttggagaagatggcctccaaatccttgtacagcgccttggacttgggcct 253
             ||||||||||||||||||||||||||| | ||||||||| ||  ||||||||||||  ||
Sbjct: 17844 ctgctacctgttggagaagatggcctcaagatccttgtagagtcccttggacttggagct 17785

                  
Query: 254   ccact 258
             |||||
Sbjct: 17784 ccact 17780



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                            
Query: 194      ctgctacctgttggagaagatggcctccaaatccttgtacagcgccttggacttgggcct 253
                ||||||||||||||||||||||||||| | ||||||||| ||  ||||||||||||  ||
Sbjct: 29375421 ctgctacctgttggagaagatggcctcaagatccttgtagagtcccttggacttggagct 29375480

                     
Query: 254      ccact 258
                |||||
Sbjct: 29375481 ccact 29375485



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>dbj|AK100617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108C21, full
            insert sequence
          Length = 2945

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                        
Query: 194  ctgctacctgttggagaagatggcctccaaatccttgtacagcgccttggacttgggcct 253
            ||||||||||||||||||||||||||| | ||||||||| ||  ||||||||||||  ||
Sbjct: 2824 ctgctacctgttggagaagatggcctcaagatccttgtagagtcccttggacttggagct 2765

                 
Query: 254  ccact 258
            |||||
Sbjct: 2764 ccact 2760



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>dbj|AK067256.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097I21, full
            insert sequence
          Length = 3853

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                        
Query: 194  ctgctacctgttggagaagatggcctccaaatccttgtacagcgccttggacttgggcct 253
            ||||||||||||||||||||||||||| | ||||||||| ||  ||||||||||||  ||
Sbjct: 3716 ctgctacctgttggagaagatggcctcaagatccttgtagagtcccttggacttggagct 3657

                 
Query: 254  ccact 258
            |||||
Sbjct: 3656 ccact 3652



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>emb|AL136096.7| Human DNA sequence from clone RP1-23D17 on chromosome 6q15-16.2
             Contains the SPACA1 gene for sperm acrosome associated 1,
             part of the CNR1 gene for cannabinoid receptor 1 (brain)
             and a CpG island, complete sequence
          Length = 112212

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   atgttgcttattctcacttg 173
             ||||||||||||||||||||
Sbjct: 76751 atgttgcttattctcacttg 76770



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>gb|AC079177.21| Homo sapiens Xp BAC RP11-147B14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 155533

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    ttgtgaataatgctaccaacatta 71
             |||||||||| |||||||||||||
Sbjct: 25257 ttgtgaataaagctaccaacatta 25234


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,470,519
Number of Sequences: 3902068
Number of extensions: 2470519
Number of successful extensions: 52302
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52277
Number of HSP's gapped (non-prelim): 25
length of query: 262
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 240
effective length of database: 17,147,199,772
effective search space: 4115327945280
effective search space used: 4115327945280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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