>UBP8_HUMAN (P40818) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 8) (Ubiquitin-specific processing
            protease 8) (Deubiquitinating enzyme 8) (hUBPy)
          Length = 1118

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +3

Query: 99   QYKSSRICIT-HKRNTTISQ---ITQPIRSTNKCTYMMKLLLFS 218
            Q+KS+  C+T HK++ T      ++ P+ ST+KCT    L LFS
Sbjct: 929  QFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFS 972

>UBP8_MOUSE (Q80U87) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 8) (Ubiquitin-specific-processing
            protease 8) (Deubiquitinating enzyme 8) (mUBPy)
          Length = 1080

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 99   QYKSSRICITHKRNTTISQ----ITQPIRSTNKCTYMMKLLLFS 218
            Q+KS+  C+T +R +   +    ++ P+ ST+KCT    L LFS
Sbjct: 891  QFKSTVQCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFS 934

>5HT1B_FUGRU (O42384) 5-hydroxytryptamine 1A-beta receptor (5-HT-1A-beta)|
           (Serotonin receptor 1A-beta) (5-HT1A-beta) (F1B)
          Length = 416

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/66 (24%), Positives = 33/66 (50%)
 Frame = -3

Query: 241 YFFLGILMEKSSSFIIYVHLLVDLIGCVIWLIVVFLLCVIHILLDLYWNEQQQCGFEKMM 62
           +F + ++M          H L D+I    WL   +   +++ ++  Y+N+  Q  F+K++
Sbjct: 355 FFIVALVMPFCQESCFMPHWLKDVIN---WL--GYSNSLLNPIIYAYFNKDFQSAFKKII 409

Query: 61  ICYICR 44
            C+ CR
Sbjct: 410 KCHFCR 415

>LFTR_XYLFT (Q87DL5) Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6)|
           (L/F-transferase) (Leucyltransferase)
           (Phenyalanyltransferase)
          Length = 243

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 34  VATGDKYNRSSFFQIHTAVARSNTSQVGYVLHTKEIPL 147
           VA G  +   S F  H   ++   + + Y LHT  +PL
Sbjct: 153 VAIGRMFFGESMFSTHNGASKIALASLAYFLHTHSVPL 190

>NUIM_TRYBB (P30826) NADH-ubiquinone oxidoreductase subunit 8 (EC 1.6.5.3)|
           (Maxicircle iron-sulfur protein 1)
          Length = 145

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -3

Query: 202 FIIYVHLLVDLIGCV-----IWLIVVFLLCVIHILLDLYWNEQQQCGFEKMMICYICRRL 38
           F  +V   +  + CV     I L +V LL   +  L  YW     CG E+ + C +C  +
Sbjct: 8   FFFFVCFYMCFVCCVTICLPIELTIVSLLVRGNHFLRFYW-----CGLERCIACRLCDLI 62

Query: 37  -PLMSNEVHVG 8
            P ++ +V VG
Sbjct: 63  CPSLALDVRVG 73

>PMT3_YEAST (P47190) Dolichyl-phosphate-mannose--protein mannosyltransferase 3|
           (EC 2.4.1.109)
          Length = 753

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 226 ILMEKSSSFIIYV-HLLVDLIGCVIWLIVVFLLC 128
           +L ++S S+ +YV H L  + G +I  + VFLLC
Sbjct: 264 LLSDRSVSWKVYVNHWLARIFGLIIIPVCVFLLC 297

>ENDR_PAEPO (P27871) Probable HTH-type transcriptional regulator endR|
          Length = 340

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +2

Query: 125 YTQKKYHYQPNNTTNKINQQM----YIYDEAAALLHQ 223
           + QK+Y+Y   NT  KI Q +    YI +E A  L Q
Sbjct: 22  FLQKRYNYMSENTKKKIEQAIEDLSYIPNEVARSLKQ 58

>NU1M_YARLI (Q9B6E8) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 341

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
 Frame = -1

Query: 219 WRRAAASSYMY-----ICWLILLVVLFG 151
           W RAA   + Y      CW+ILL +LFG
Sbjct: 295 WVRAAFPRFTYDNLINFCWIILLPLLFG 322

>STP22_YEAST (P25604) Suppressor protein STP22 of temperature-sensitive|
           alpha-factor receptor and arginine permease (Vacuolar
           protein sorting-associated protein VPS23)
          Length = 385

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 282 IKQGREMSASRYLI*WHL 335
           +KQGRE++  ++L+ WH+
Sbjct: 360 VKQGRELARQQFLVRWHI 377

>ARID2_HUMAN (Q68CP9) AT-rich interactive domain-containing protein 2 (ARID|
            domain-containing protein 2) (BRG1-associated factor 200)
            (BAF200)
          Length = 1835

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 1    DPNQHELHLTSVATGDKYNRSSFFQIHTAVARSNTSQVGYVLHTKEIPL 147
            D  ++E+H+ S+  G KY+ SS    ++   +S T+Q   + +   + L
Sbjct: 1282 DTKENEMHVGSLLNGRKYSDSSLPPSNSGKIQSETNQCSLISNGPSLEL 1330

>MVIN_HELPY (O25551) Virulence factor mviN homolog|
          Length = 461

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = -3

Query: 235 FLGILMEKSSSFIIYVHLLVDLIGCVIWLIVVFLLCVIHILL 110
           FL +L  K+  F +++ ++ +L     WL+++FL CV  +LL
Sbjct: 404 FLFVLTIKAFGFQLFLGIIKNLKS---WLVILFLACVEILLL 442


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,958,408
Number of Sequences: 219361
Number of extensions: 959048
Number of successful extensions: 2589
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2589
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)