Clone Name | rbastl13f12 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 153 bits (77), Expect = 1e-34 Identities = 86/89 (96%) Strand = Plus / Minus Query: 20 ttcattatggggcaaaacaagggattttttctgcacacaacaatgcattgaccggtagcc 79 |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 80 agctgagctgagcttccgcatgccgatca 108 ||||||||||||||||||||||||||||| Sbjct: 2836 agctgagctgagcttccgcatgccgatca 2808
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 aaacaagggattttttctgca 54 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 gcaaaacaagggattttttct 51 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence Length = 187121 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 ccagctgagctgagcttcc 96 ||||||||||||||||||| Sbjct: 93147 ccagctgagctgagcttcc 93129
>ref|XM_762882.1| Giardia lamblia ATCC 50803 prolyl-tRNA synthetase (GLP_661_10786_9158) partial mRNA Length = 1629 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 55 cacaacaatgcattgaccg 73 ||||||||||||||||||| Sbjct: 1215 cacaacaatgcattgaccg 1197
>emb|BX908804.17| Zebrafish DNA sequence from clone CH211-163M16 in linkage group 3, complete sequence Length = 162642 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 attttttctgcacacaaca 61 ||||||||||||||||||| Sbjct: 61311 attttttctgcacacaaca 61293
>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete sequence Length = 157981 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 gcaaaacaagggatttttt 49 ||||||||||||||||||| Sbjct: 129429 gcaaaacaagggatttttt 129411
>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence Length = 140774 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 gcaaaacaagggatttttt 49 ||||||||||||||||||| Sbjct: 89166 gcaaaacaagggatttttt 89184
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 38.2 bits (19), Expect = 5.1 Identities = 25/27 (92%) Strand = Plus / Minus Query: 43 attttttctgcacacaacaatgcattg 69 |||||||| |||||| ||||||||||| Sbjct: 2128108 attttttccgcacacgacaatgcattg 2128082
>gb|AC096741.3| Homo sapiens BAC clone RP11-327O17 from 4, complete sequence Length = 177300 Score = 38.2 bits (19), Expect = 5.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 17 gacttcattatggggcaaaacaa 39 ||||| ||||||||||||||||| Sbjct: 129856 gacttaattatggggcaaaacaa 129878
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 5.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 5 catcacaccatcgacttcattat 27 |||||||||||||| |||||||| Sbjct: 22022485 catcacaccatcgaattcattat 22022463
>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence Length = 185162 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 agctgagctgagcttccgc 98 ||||||||||||||||||| Sbjct: 29471 agctgagctgagcttccgc 29453
>gb|AF245446.2|AF245446 Giardia intestinalis prolyl-tRNA synthetase (proS) gene, complete cds Length = 1629 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 55 cacaacaatgcattgaccg 73 ||||||||||||||||||| Sbjct: 1215 cacaacaatgcattgaccg 1197
>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence Length = 199128 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 agctgagctgagcttccgc 98 ||||||||||||||||||| Sbjct: 101444 agctgagctgagcttccgc 101426
>gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporter (HT2) gene, complete cds Length = 3402 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 ggaacatcacaccatcgac 19 ||||||||||||||||||| Sbjct: 709 ggaacatcacaccatcgac 691
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 38.2 bits (19), Expect = 5.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 5 catcacaccatcgacttcattat 27 |||||||||||||| |||||||| Sbjct: 64549 catcacaccatcgaattcattat 64527
>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete sequence Length = 227565 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 gcaaaacaagggatttttt 49 ||||||||||||||||||| Sbjct: 225395 gcaaaacaagggatttttt 225377
>gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporter (TcoHT2) gene, complete cds Length = 3085 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 ggaacatcacaccatcgac 19 ||||||||||||||||||| Sbjct: 709 ggaacatcacaccatcgac 691
>gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporter (TcoHT1) gene, complete cds Length = 2703 Score = 38.2 bits (19), Expect = 5.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 ggaacatcacaccatcgac 19 ||||||||||||||||||| Sbjct: 709 ggaacatcacaccatcgac 691 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 889,807 Number of Sequences: 3902068 Number of extensions: 889807 Number of successful extensions: 59060 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59003 Number of HSP's gapped (non-prelim): 57 length of query: 112 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 91 effective length of database: 17,151,101,840 effective search space: 1560750267440 effective search space used: 1560750267440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)