ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 153 1e-34
2emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.33
3emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.33
4gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosom... 38 5.1
5ref|XM_762882.1| Giardia lamblia ATCC 50803 prolyl-tRNA syntheta... 38 5.1
6emb|BX908804.17| Zebrafish DNA sequence from clone CH211-163M16 ... 38 5.1
7emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in ... 38 5.1
8emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, ... 38 5.1
9dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 5.1
10gb|AC096741.3| Homo sapiens BAC clone RP11-327O17 from 4, comple... 38 5.1
11dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.1
12gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, comp... 38 5.1
13gb|AF245446.2|AF245446 Giardia intestinalis prolyl-tRNA syntheta... 38 5.1
14gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, compl... 38 5.1
15gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporte... 38 5.1
16dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.1
17emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in... 38 5.1
18gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporte... 38 5.1
19gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporte... 38 5.1

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  153 bits (77), Expect = 1e-34
 Identities = 86/89 (96%)
 Strand = Plus / Minus

                                                                        
Query: 20   ttcattatggggcaaaacaagggattttttctgcacacaacaatgcattgaccggtagcc 79
            |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                         
Query: 80   agctgagctgagcttccgcatgccgatca 108
            |||||||||||||||||||||||||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatca 2808



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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.33
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    aaacaagggattttttctgca 54
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.33
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    gcaaaacaagggattttttct 51
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



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>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence
          Length = 187121

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    ccagctgagctgagcttcc 96
             |||||||||||||||||||
Sbjct: 93147 ccagctgagctgagcttcc 93129



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>ref|XM_762882.1| Giardia lamblia ATCC 50803 prolyl-tRNA synthetase
            (GLP_661_10786_9158) partial mRNA
          Length = 1629

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 55   cacaacaatgcattgaccg 73
            |||||||||||||||||||
Sbjct: 1215 cacaacaatgcattgaccg 1197



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>emb|BX908804.17| Zebrafish DNA sequence from clone CH211-163M16 in linkage group 3,
             complete sequence
          Length = 162642

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    attttttctgcacacaaca 61
             |||||||||||||||||||
Sbjct: 61311 attttttctgcacacaaca 61293



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>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete
              sequence
          Length = 157981

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     gcaaaacaagggatttttt 49
              |||||||||||||||||||
Sbjct: 129429 gcaaaacaagggatttttt 129411



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>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence
          Length = 140774

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    gcaaaacaagggatttttt 49
             |||||||||||||||||||
Sbjct: 89166 gcaaaacaagggatttttt 89184



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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 43      attttttctgcacacaacaatgcattg 69
               |||||||| |||||| |||||||||||
Sbjct: 2128108 attttttccgcacacgacaatgcattg 2128082



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>gb|AC096741.3| Homo sapiens BAC clone RP11-327O17 from 4, complete sequence
          Length = 177300

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 17     gacttcattatggggcaaaacaa 39
              ||||| |||||||||||||||||
Sbjct: 129856 gacttaattatggggcaaaacaa 129878



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 5        catcacaccatcgacttcattat 27
                |||||||||||||| ||||||||
Sbjct: 22022485 catcacaccatcgaattcattat 22022463



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>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence
          Length = 185162

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    agctgagctgagcttccgc 98
             |||||||||||||||||||
Sbjct: 29471 agctgagctgagcttccgc 29453



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>gb|AF245446.2|AF245446 Giardia intestinalis prolyl-tRNA synthetase (proS) gene, complete cds
          Length = 1629

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 55   cacaacaatgcattgaccg 73
            |||||||||||||||||||
Sbjct: 1215 cacaacaatgcattgaccg 1197



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>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence
          Length = 199128

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     agctgagctgagcttccgc 98
              |||||||||||||||||||
Sbjct: 101444 agctgagctgagcttccgc 101426



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>gb|AF172996.1|AF172996 Trypanosoma congolense glucose transporter (HT2) gene, complete cds
          Length = 3402

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   ggaacatcacaccatcgac 19
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0635G10
          Length = 146728

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 5     catcacaccatcgacttcattat 27
             |||||||||||||| ||||||||
Sbjct: 64549 catcacaccatcgaattcattat 64527



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>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete
              sequence
          Length = 227565

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 31     gcaaaacaagggatttttt 49
              |||||||||||||||||||
Sbjct: 225395 gcaaaacaagggatttttt 225377



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>gb|AF032097.1|AF032097 Trypanosoma congolense glucose transporter (TcoHT2) gene, complete
           cds
          Length = 3085

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   ggaacatcacaccatcgac 19
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691



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>gb|AF032096.1|AF032096 Trypanosoma congolense glucose transporter (TcoHT1) gene, complete
           cds
          Length = 2703

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 1   ggaacatcacaccatcgac 19
           |||||||||||||||||||
Sbjct: 709 ggaacatcacaccatcgac 691


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 889,807
Number of Sequences: 3902068
Number of extensions: 889807
Number of successful extensions: 59060
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59003
Number of HSP's gapped (non-prelim): 57
length of query: 112
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 91
effective length of database: 17,151,101,840
effective search space: 1560750267440
effective search space used: 1560750267440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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