Clone Information

BLAST Search Result

Clone Name	rbastl13f11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|M95746.1\|WHTSTPCDN Wheat (clone p80k-16) initiation factor is...	309	3e-81
2	gb\|M95747.1\|WHTIF4F82B Wheat (clone p80k-34) initiation factor i...	303	2e-79
3	emb\|AL606594.4\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	100	5e-18
4	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	100	5e-18
5	dbj\|AK065553.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	100	5e-18
6	dbj\|AK060761.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	100	5e-18
7	emb\|AL442115.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	100	5e-18
8	gb\|AC151915.8\| Medicago truncatula clone mth2-30n12, complete se...	46	0.067
9	gb\|AC151743.27\| Medicago truncatula clone mth2-25e15, complete s...	46	0.067
10	emb\|CR847826.13\| Zebrafish DNA sequence from clone CH211-204D2 i...	44	0.26
11	emb\|Z69724.1\|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5...	44	0.26
12	emb\|AM156958.1\| Oryza sativa (indica cultivar-group) mRNA for pu...	44	0.26
13	emb\|AM156957.1\| Oryza sativa (indica cultivar-group) mRNA for pu...	44	0.26
14	emb\|BX927394.14\| Zebrafish DNA sequence from clone CH211-262I10 ...	42	1.0
15	emb\|AL157361.6\| Human DNA sequence from clone RP11-132L12 on chr...	42	1.0
16	gb\|AC026415.4\| Homo sapiens chromosome 5 clone CTD-2046I8, compl...	42	1.0
17	gb\|AC022127.4\|AC022127 Homo sapiens chromosome 5 clone CTD-2151N...	42	1.0
18	gb\|BT016928.1\| Zea mays clone E04912703C02.c mRNA sequence	40	4.1
19	gb\|AC140845.2\| Mus musculus BAC clone RP24-386C13 from chromosom...	40	4.1
20	gb\|AC161931.6\| Mus musculus chromosome 3, clone RP23-290N20, com...	40	4.1
21	gb\|AC123554.3\| Mus musculus BAC clone RP23-135A9 from chromosome...	40	4.1
22	gb\|AC131080.13\| Mus musculus chromosome 16, clone RP23-438H16, c...	40	4.1
23	gb\|AC124740.4\| Mus musculus BAC clone RP23-356M1 from chromosome...	40	4.1
24	gb\|AC128952.4\| Rattus norvegicus 14 BAC CH230-510F9 (Children's ...	40	4.1
25	emb\|AL450312.10\| Human DNA sequence from clone RP11-138L24 on ch...	40	4.1
26	emb\|AL354701.7\| Human DNA sequence from clone RP11-785H23 on chr...	40	4.1
27	gb\|AC099101.7\| Rattus norvegicus 14 BAC CH230-186B23 (Children's...	40	4.1
28	emb\|AL589738.6\| Mouse DNA sequence from clone RP23-322J11 on chr...	40	4.1
29	emb\|AJ400899.1\|PSA400899 Pisum sativum partial kdsA gene for Kdo...	40	4.1
30	emb\|CR855858.5\| Zebrafish DNA sequence from clone CH211-113H5 in...	40	4.1
31	emb\|BX901883.5\| Zebrafish DNA sequence from clone DKEY-151M15 in...	40	4.1
32	emb\|BX927134.11\| Zebrafish DNA sequence from clone CH211-261C20 ...	40	4.1
33	gb\|AY095288.1\| Picea abies clone Panebe7 genomic sequence	40	4.1
34	gb\|AC108104.2\| Homo sapiens chromosome 5 clone RP11-198P15, comp...	40	4.1
35	gb\|AC008158.16\| Homo sapiens chromosome 17, clone RP11-42F20, co...	40	4.1
36	gb\|AC060771.8\| Homo sapiens chromosome 17, clone RP11-169I9, com...	40	4.1
37	dbj\|AK038355.1\| Mus musculus 16 days neonate thymus cDNA, RIKEN ...	40	4.1
38	gb\|AC084664.1\|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, c...	40	4.1
39	gb\|AC084472.1\|AC084472 Caenorhabditis briggsae cosmid CB048M21, ...	40	4.1
40	dbj\|AP006628.1\| Onion yellows phytoplasma OY-M DNA, complete genome	40	4.1
41	emb\|AL773512.6\| Mouse DNA sequence from clone RP23-454N6 on chro...	40	4.1
42	emb\|AL935194.4\| Zebrafish DNA sequence from clone CH211-237E12, ...	40	4.1
43	emb\|BX248390.7\| Zebrafish DNA sequence from clone DKEY-34F16 in ...	40	4.1
44	emb\|CR751546.4\| Zebrafish DNA sequence from clone CH211-53M6 in ...	40	4.1
45	emb\|BX640497.11\| Zebrafish DNA sequence from clone CH211-108O9 i...	40	4.1
46	emb\|BX470128.8\| Zebrafish DNA sequence from clone DKEY-19F21 in ...	40	4.1
47	gb\|AY110434.1\| Zea mays CL533_2 mRNA sequence	40	4.1
48	emb\|AM156959.1\| Oryza glaberrima mRNA for putative eukaryotic tr...	40	4.1
49	emb\|AL161752.4\|CNS01RHH Human chromosome 14 DNA sequence BAC R-9...	40	4.1
50	gb\|AC153487.1\| Taeniopygia guttata clone TG__Ba0319A15, complete...	40	4.1
51	emb\|AL954703.8\| Zebrafish DNA sequence from clone CH211-51I10 in...	40	4.1
52	gb\|AC117544.8\| Mus musculus chromosome 8, clone RP23-99L5, compl...	40	4.1

>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
            sequence
          Length = 2863

 Score =  309 bits (156), Expect = 3e-81
 Identities = 159/160 (99%)
 Strand = Plus / Minus

                                                                        
Query: 16   aagccaaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgta 75
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 aagccaaaatgatcttagattcagttttcgactcctacaatgctgacacgatatattgta 2804

                                                                        
Query: 76   accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 accgacagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaaga 2744

                                                    
Query: 136  aataataacattggaggagacacaaaaacatcccatttga 175
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 aataataacattggaggagacacaaaaacatcccatttga 2704



 Score =  161 bits (81), Expect = 2e-36
 Identities = 114/121 (94%), Gaps = 3/121 (2%)
 Strand = Plus / Minus

                                                                        
Query: 195  gccttgttcattcccaggctccagcaagagttaggccgccgtcgcc-gagagaccaaaat 253
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 2693 gccttgttcattcccaggctccagcaagagttaggccgccgtcgccagagagacc-aaat 2635

                                                                        
Query: 254  ccatggcttcttcctttcctc-caacaataatcaacactcatgtaacctcgcaaaaatat 312
            |||||||||||| || |||||  ||||||||||||||||||||| |||||||||||||||
Sbjct: 2634 ccatggcttctttctgtcctcgaaacaataatcaacactcatgtgacctcgcaaaaatat 2575

             
Query: 313  a 313
            |
Sbjct: 2574 a 2574

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>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA,
            complete cds
          Length = 2887

 Score =  303 bits (153), Expect = 2e-79
 Identities = 153/153 (100%)
 Strand = Plus / Minus

                                                                        
Query: 21   aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 80
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 aaaataatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccga 2803

                                                                        
Query: 81   cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 cagaatactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataa 2743

                                             
Query: 141  taacattggaggagacacaaaaacatcccattt 173
            |||||||||||||||||||||||||||||||||
Sbjct: 2742 taacattggaggagacacaaaaacatcccattt 2710



 Score =  198 bits (100), Expect = 7e-48
 Identities = 116/120 (96%), Gaps = 1/120 (0%)
 Strand = Plus / Minus

                                                                        
Query: 195  gccttgttcattcccaggctccagcaagagttaggccgccgtcgccgagagaccaaaatc 254
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2696 gccttgttcattcccaggctccagcgagagttaggccgccgtcgccgagagaccaaaatc 2637

                                                                        
Query: 255  catggcttcttcctttcctc-caacaataatcaacactcatgtaacctcgcaaaaatata 313
            ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||
Sbjct: 2636 catggcttcttcctttcctcgaaacaataatcaacactcatgtgacctcgcaaaaatata 2577

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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 59    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 117
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 42105 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 42164

                                       
Query: 118   gtgtaagaactgaaaagaaataataa 143
             ||||| | || |||||||| ||||||
Sbjct: 42165 gtgtacgcacagaaaagaactaataa 42190



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 276   aacaataatcaacactcatgtaacctcgcaaaaatata 313
             ||||||||| ||||||||| | |||| |||||||||||
Sbjct: 42297 aacaataatgaacactcatctgaccttgcaaaaatata 42334



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 248   caaaatccatggcttcttcctttcct 273
             |||||||||||||||||| |||||||
Sbjct: 42261 caaaatccatggcttctttctttcct 42286

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                            
Query: 59       tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 117
                |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 24921520 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 24921579

                                          
Query: 118      gtgtaagaactgaaaagaaataataa 143
                ||||| | || |||||||| ||||||
Sbjct: 24921580 gtgtacgcacagaaaagaactaataa 24921605



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 276      aacaataatcaacactcatgtaacctcgcaaaaatata 313
                ||||||||| ||||||||| | |||| |||||||||||
Sbjct: 24921712 aacaataatgaacactcatctgaccttgcaaaaatata 24921749



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 248      caaaatccatggcttcttcctttcct 273
                |||||||||||||||||| |||||||
Sbjct: 24921676 caaaatccatggcttctttctttcct 24921701

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>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full
            insert sequence
          Length = 2907

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 59   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 117
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 2795 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 2736

                                      
Query: 118  gtgtaagaactgaaaagaaataataa 143
            ||||| | || |||||||| ||||||
Sbjct: 2735 gtgtacgcacagaaaagaactaataa 2710



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 248  caaaatccatggcttcttcctttcct 273
            |||||||||||||||||| |||||||
Sbjct: 2639 caaaatccatggcttctttctttcct 2614



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 276  aacaataatcaacactcatgtaacctcgcaaaaatata 313
            ||||||||| ||||||||| | |||| |||||||||||
Sbjct: 2603 aacaataatgaacactcatctgaccttgcaaaaatata 2566

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>dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A02, full
            insert sequence
          Length = 1712

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 59   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 117
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 1701 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 1642

                                      
Query: 118  gtgtaagaactgaaaagaaataataa 143
            ||||| | || |||||||| ||||||
Sbjct: 1641 gtgtacgcacagaaaagaactaataa 1616



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 248  caaaatccatggcttcttcctttcct 273
            |||||||||||||||||| |||||||
Sbjct: 1545 caaaatccatggcttctttctttcct 1520



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 276  aacaataatcaacactcatgtaacctcgcaaaaatata 313
            ||||||||| ||||||||| | |||| |||||||||||
Sbjct: 1509 aacaataatgaacactcatctgaccttgcaaaaatata 1472

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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 99.6 bits (50), Expect = 5e-18
 Identities = 78/86 (90%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 59    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 117
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 49634 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 49693

                                       
Query: 118   gtgtaagaactgaaaagaaataataa 143
             ||||| | || |||||||| ||||||
Sbjct: 49694 gtgtacgcacagaaaagaactaataa 49719



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 276   aacaataatcaacactcatgtaacctcgcaaaaatata 313
             ||||||||| ||||||||| | |||| |||||||||||
Sbjct: 49826 aacaataatgaacactcatctgaccttgcaaaaatata 49863



 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 248   caaaatccatggcttcttcctttcct 273
             |||||||||||||||||| |||||||
Sbjct: 49790 caaaatccatggcttctttctttcct 49815

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>gb|AC151915.8| Medicago truncatula clone mth2-30n12, complete sequence
          Length = 92346

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 158   caaaaacatcccatttgacagaagaag 184
             |||||||||||||||||| ||||||||
Sbjct: 45816 caaaaacatcccatttgagagaagaag 45842

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>gb|AC151743.27| Medicago truncatula clone mth2-25e15, complete sequence
          Length = 105045

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 158   caaaaacatcccatttgacagaagaag 184
             |||||||||||||||||| ||||||||
Sbjct: 28363 caaaaacatcccatttgagagaagaag 28337

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>emb|CR847826.13| Zebrafish DNA sequence from clone CH211-204D2 in linkage group 8,
             complete sequence
          Length = 150519

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 22    aaataatcttagattcagtttt 43
             ||||||||||||||||||||||
Sbjct: 27178 aaataatcttagattcagtttt 27199

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>emb|Z69724.1|HSU85B5 Human DNA sequence from clone LL0XNC01-85B5 on chromosome X, complete
            sequence
          Length = 39550

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 122  aagaactgaaaagaaataataacatt 147
            |||| |||||||||||||||||||||
Sbjct: 3229 aagagctgaaaagaaataataacatt 3204

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>emb|AM156958.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar Gigante
          Length = 2599

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 276  aacaataatcaacactcatgtaacctcgcaaaaatata 313
            ||||||||| ||||||||| | |||| |||||||||||
Sbjct: 2571 aacaataatgaacactcatctgaccttgcaaaaatata 2534

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>emb|AM156957.1| Oryza sativa (indica cultivar-group) mRNA for putative eukaryotic
            translation initiation factor 4 gamma (eif(iso)4g gene),
            cultivar IR64
          Length = 2599

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 276  aacaataatcaacactcatgtaacctcgcaaaaatata 313
            ||||||||| ||||||||| | |||| |||||||||||
Sbjct: 2564 aacaataatgaacactcatctgaccttgcaaaaatata 2527



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 249  aaaatccatggcttcttcctttcct 273
            ||||||||||||||||| |||||||
Sbjct: 2599 aaaatccatggcttctttctttcct 2575

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>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 50     ctacaatgctgacacgatatattgt 74
              |||||||||||| ||||||||||||
Sbjct: 122731 ctacaatgctgaaacgatatattgt 122707

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>emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chromosome 13q21.33-22.3
             Contains a signal sequence receptor, alpha
             (translocon-associated protein alpha) (SSR1) pseudogene,
             complete sequence
          Length = 151603

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 206   tcccaggctccagcaagagtt 226
             |||||||||||||||||||||
Sbjct: 87107 tcccaggctccagcaagagtt 87087

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>gb|AC026415.4| Homo sapiens chromosome 5 clone CTD-2046I8, complete sequence
          Length = 67124

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 206  tcccaggctccagcaagagtt 226
            |||||||||||||||||||||
Sbjct: 3598 tcccaggctccagcaagagtt 3618

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>gb|AC022127.4|AC022127 Homo sapiens chromosome 5 clone CTD-2151N11, complete sequence
          Length = 83029

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 206   tcccaggctccagcaagagtt 226
             |||||||||||||||||||||
Sbjct: 34025 tcccaggctccagcaagagtt 34005

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>gb|BT016928.1| Zea mays clone E04912703C02.c mRNA sequence
          Length = 249

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 249 aaaatccatggcttcttcctttcc 272
           ||||||||||||||||| ||||||
Sbjct: 74  aaaatccatggcttctttctttcc 97

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>gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosome 8, complete sequence
          Length = 153426

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   gaaaagaaataataacattg 148
             ||||||||||||||||||||
Sbjct: 39323 gaaaagaaataataacattg 39342

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>gb|AC161931.6| Mus musculus chromosome 3, clone RP23-290N20, complete sequence
          Length = 186062

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    aaattgtgtaagaactgaaa 132
              ||||||||||||||||||||
Sbjct: 107485 aaattgtgtaagaactgaaa 107504

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>gb|AC123554.3| Mus musculus BAC clone RP23-135A9 from chromosome 13, complete sequence
          Length = 205869

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   ccatggcttcttcctttcct 273
             ||||||||||||||||||||
Sbjct: 31484 ccatggcttcttcctttcct 31503

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>gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, complete sequence
          Length = 192584

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 109    ttacaaattgtgtaagaactgaaaagaaataa 140
              |||||||| || ||||||||||||| ||||||
Sbjct: 132634 ttacaaatagtttaagaactgaaaataaataa 132665

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>gb|AC124740.4| Mus musculus BAC clone RP23-356M1 from chromosome 18, complete sequence
          Length = 190023

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   cccaggctccagcaagagtt 226
             ||||||||||||||||||||
Sbjct: 97827 cccaggctccagcaagagtt 97808

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>gb|AC128952.4| Rattus norvegicus 14 BAC CH230-510F9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 170859

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   tgaaaagaaataataacatt 147
             ||||||||||||||||||||
Sbjct: 30825 tgaaaagaaataataacatt 30844

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>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete
           sequence
          Length = 164559

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 116 ttgtgtaagaactgaaaagaaata 139
           |||||||||||||||||| |||||
Sbjct: 55  ttgtgtaagaactgaaaaaaaata 32

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>emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chromosome 9 Contains the 3'
              end of a novel gene, and a novel pseudogene, complete
              sequence
          Length = 131366

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 116    ttgtgtaagaactgaaaagaaata 139
              |||||||||||||||||| |||||
Sbjct: 129421 ttgtgtaagaactgaaaaaaaata 129398

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>gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 211584

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   tgaaaagaaataataacatt 147
             ||||||||||||||||||||
Sbjct: 41625 tgaaaagaaataataacatt 41606

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>emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chromosome 13 Contains the
             Foxq1 gene for forkhead box Q1 (Hfh1l), two novel genes
             and two CpG islands, complete sequence
          Length = 187709

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   ttcattcccaggctccagca 220
             ||||||||||||||||||||
Sbjct: 35935 ttcattcccaggctccagca 35916

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>emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo-8-phosphate synthase, exons
           1-4
          Length = 1812

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 taagaactgaaaagaaataa 140
           ||||||||||||||||||||
Sbjct: 639 taagaactgaaaagaaataa 620

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>emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in linkage group 24,
             complete sequence
          Length = 152666

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    atgctgacacgatatattgt 74
             ||||||||||||||||||||
Sbjct: 54458 atgctgacacgatatattgt 54439

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>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
              complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     atgctgacacgatatattgt 74
              ||||||||||||||||||||
Sbjct: 198757 atgctgacacgatatattgt 198776

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>emb|BX927134.11| Zebrafish DNA sequence from clone CH211-261C20 in linkage group 20,
             complete sequence
          Length = 86384

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   tgaaaagaaataataacatt 147
             ||||||||||||||||||||
Sbjct: 84744 tgaaaagaaataataacatt 84763

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>gb|AY095288.1| Picea abies clone Panebe7 genomic sequence
          Length = 674

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 270 tcctccaacaataatcaaca 289
           ||||||||||||||||||||
Sbjct: 225 tcctccaacaataatcaaca 206

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>gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, complete sequence
          Length = 96678

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   acaaattgtgtaagaactga 130
             ||||||||||||||||||||
Sbjct: 56401 acaaattgtgtaagaactga 56382

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>gb|AC008158.16| Homo sapiens chromosome 17, clone RP11-42F20, complete sequence
          Length = 148110

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   ttgttcattcccaggctcca 217
             ||||||||||||||||||||
Sbjct: 70836 ttgttcattcccaggctcca 70817

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>gb|AC060771.8| Homo sapiens chromosome 17, clone RP11-169I9, complete sequence
          Length = 138969

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   cttcctttcctccaacaata 282
             ||||||||||||||||||||
Sbjct: 40607 cttcctttcctccaacaata 40626

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>dbj|AK038355.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130097D18
           product:unclassifiable, full insert sequence
          Length = 719

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 cccaggctccagcaagagtt 226
           ||||||||||||||||||||
Sbjct: 28  cccaggctccagcaagagtt 9

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>gb|AC084664.1|CBRG47C14 Caenorhabditis briggsae cosmid G47C14, complete sequence
          Length = 41476

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  gtgtaagaactgaaaagaaa 137
            ||||||||||||||||||||
Sbjct: 5836 gtgtaagaactgaaaagaaa 5855

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>gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, complete sequence
          Length = 62355

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    aagccaaaataatcttagat 35
             ||||||||||||||||||||
Sbjct: 14713 aagccaaaataatcttagat 14732

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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 121    taagaactgaaaagaaataataac 144
              |||||||| |||||||||||||||
Sbjct: 183747 taagaacttaaaagaaataataac 183724

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>emb|AL773512.6| Mouse DNA sequence from clone RP23-454N6 on chromosome 2, complete
             sequence
          Length = 159731

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   gaaaagaaataataacattg 148
             ||||||||||||||||||||
Sbjct: 65829 gaaaagaaataataacattg 65810

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>emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, complete sequence
          Length = 145569

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    atgctgacacgatatattgt 74
             ||||||||||||||||||||
Sbjct: 50947 atgctgacacgatatattgt 50928

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>emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in linkage group 20,
             complete sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    atgctgacacgatatattgt 74
             ||||||||||||||||||||
Sbjct: 46843 atgctgacacgatatattgt 46824

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>emb|CR751546.4| Zebrafish DNA sequence from clone CH211-53M6 in linkage group 20,
           complete sequence
          Length = 9831

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 tgaaaagaaataataacatt 147
           ||||||||||||||||||||
Sbjct: 360 tgaaaagaaataataacatt 379

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>emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 in linkage group 20,
             complete sequence
          Length = 189717

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    atgctgacacgatatattgt 74
             ||||||||||||||||||||
Sbjct: 78894 atgctgacacgatatattgt 78875

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>emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in linkage group 20,
             complete sequence
          Length = 209360

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    atgctgacacgatatattgt 74
             ||||||||||||||||||||
Sbjct: 38990 atgctgacacgatatattgt 38971

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>gb|AY110434.1| Zea mays CL533_2 mRNA sequence
          Length = 843

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 249 aaaatccatggcttcttcctttcc 272
           ||||||||||||||||| ||||||
Sbjct: 672 aaaatccatggcttctttctttcc 649

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>emb|AM156959.1| Oryza glaberrima mRNA for putative eukaryotic translation initiation
            factor 4 gamma (eif(iso)4g gene), cultivar Tog5681
          Length = 2699

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 250  aaatccatggcttcttcctttcct 273
            |||||||||||||||| |||||||
Sbjct: 2699 aaatccatggcttctttctttcct 2676

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>emb|AL161752.4|CNS01RHH Human chromosome 14 DNA sequence BAC R-99L13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178433

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 141   taacattggaggagacacaaaaac 164
             ||||||||||||||||||| ||||
Sbjct: 93093 taacattggaggagacacataaac 93116

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>gb|AC153487.1| Taeniopygia guttata clone TG__Ba0319A15, complete sequence
          Length = 136080

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   ttcccaggctccagcaagag 224
             ||||||||||||||||||||
Sbjct: 42008 ttcccaggctccagcaagag 41989

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>emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in linkage group 1,
              complete sequence
          Length = 184073

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 55     atgctgacacgatatattgt 74
              ||||||||||||||||||||
Sbjct: 135077 atgctgacacgatatattgt 135096

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>gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, complete sequence
          Length = 179585

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 129  gaaaagaaataataacattg 148
            ||||||||||||||||||||
Sbjct: 7379 gaaaagaaataataacattg 7360


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,664,469
Number of Sequences: 3902068
Number of extensions: 3664469
Number of successful extensions: 85662
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85517
Number of HSP's gapped (non-prelim): 137
length of query: 313
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 291
effective length of database: 17,147,199,772
effective search space: 4989835133652
effective search space used: 4989835133652
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result