ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SECE_BUCAI (P57152) Preprotein translocase secE subunit 30 1.8
2BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes: ATP... 28 6.7
3SATT_HUMAN (P43007) Neutral amino acid transporter A (SATT) (Ala... 28 6.7
4ASK10_YEAST (P48361) Protein ASK10 28 8.7

>SECE_BUCAI (P57152) Preprotein translocase secE subunit|
          Length = 127

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 104 YHYRQNKQKVP*SPSWLSFSITPFFLI 184
           +HY +NK K+P    W+S SI  FF++
Sbjct: 4   HHYNRNKHKIPEKVKWISISI--FFIL 28



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>BACA_BACLI (O68006) Bacitracin synthetase 1 (BA1) [Includes: ATP-dependent|
            isoleucine adenylase (IleA) (Isoleucine activase);
            ATP-dependent cysteine adenylase (CysA) (Cysteine
            activase); ATP-dependent leucine adenylase (LeuA)
            (Leucine activase); ATP-depe
          Length = 5255

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 33   QLFPYRTGNSPSNSH*TEKTQNQTITTGKTNRKFHDHHL 149
            +LFPY T  +  +       Q   +   K NR FHDHH+
Sbjct: 2324 ELFPYITAGATVHV----LNQETRLDVEKLNRYFHDHHI 2358



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>SATT_HUMAN (P43007) Neutral amino acid transporter A (SATT)|
           (Alanine/serine/cysteine/ threonine transporter) (ASCT1)
          Length = 532

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 170 ELWRRITKMVIMELSVCFACSDSLVLCFFCLMRIGG 63
           E+  R+ +M+I+ L VC   S +  L   CL R+GG
Sbjct: 80  EMLLRMLRMIILPLVVCSLVSGAASLDASCLGRLGG 115



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>ASK10_YEAST (P48361) Protein ASK10|
          Length = 1146

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 20  CITKSTISLQDGEFTLQFSLNRKNTEPNYHYRQN 121
           C+T ST +LQDG  T   +L  +  +P Y + QN
Sbjct: 759 CLTDSTFTLQDGT-TTSVNLKGRAEKPQYIHIQN 791


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,636,852
Number of Sequences: 219361
Number of extensions: 481193
Number of successful extensions: 1243
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 80,573,946
effective HSP length: 37
effective length of database: 72,457,589
effective search space used: 1738982136
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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