Clone Name | rbastl13f10 |
---|---|
Clone Library Name | barley_pub |
>gb|DQ175866.1| Hordeum vulgare clone DsD5 Ds insertion site flanking region genomic sequence Length = 629 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 ccggacggagggagtactttgc 22 |||||||||||||||||||||| Sbjct: 35 ccggacggagggagtactttgc 56
>gb|DQ175850.1| Hordeum vulgare clone DsC13 Ds insertion site flanking region genomic sequence Length = 654 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 ccggacggagggagtactttgc 22 |||||||||||||||||||||| Sbjct: 559 ccggacggagggagtactttgc 580
>gb|DQ175849.1| Hordeum vulgare clone DsC11 Ds insertion site flanking region genomic sequence Length = 603 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 ccggacggagggagtactttgc 22 |||||||||||||||||||||| Sbjct: 252 ccggacggagggagtactttgc 273
>gb|DQ175839.1| Hordeum vulgare clone DsB44 Ds insertion site flanking region genomic sequence Length = 628 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 ccggacggagggagtactttgc 22 |||||||||||||||||||||| Sbjct: 1 ccggacggagggagtactttgc 22
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttgca 23 ||||||||||||||||||||| Sbjct: 2402524 ggacggagggagtactttgca 2402544 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 17285431 ggacggagggagtactttg 17285449 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 2518630 ggacggagggagtactttg 2518612
>gb|AC157733.2| Xenopus tropicalis clone ISB1-355J23, complete sequence Length = 82312 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 atcttggttatccttctccat 165 ||||||||||||||||||||| Sbjct: 35053 atcttggttatccttctccat 35073
>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083D24, complete sequence Length = 150503 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttgca 23 ||||||||||||||||||||| Sbjct: 119366 ggacggagggagtactttgca 119386
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttgca 23 ||||||||||||||||||||| Sbjct: 2402634 ggacggagggagtactttgca 2402654 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 17278972 ggacggagggagtactttg 17278990 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 2518740 ggacggagggagtactttg 2518722
>dbj|AP001301.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:F8N14 Length = 68639 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 tgatcaccatcttggttatcc 157 ||||||||||||||||||||| Sbjct: 44340 tgatcaccatcttggttatcc 44360
>gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, complete sequence Length = 182677 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cagaaaaaacacagaaccaa 101 |||||||||||||||||||| Sbjct: 112505 cagaaaaaacacagaaccaa 112524
>gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, complete sequence Length = 191988 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 taaacagaaaaaacacagaa 97 |||||||||||||||||||| Sbjct: 148060 taaacagaaaaaacacagaa 148079
>emb|BX571713.11| Zebrafish DNA sequence from clone DKEY-19H21 in linkage group 9, complete sequence Length = 103882 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 acaggcaaaacaaacagaaa 130 |||||||||||||||||||| Sbjct: 88235 acaggcaaaacaaacagaaa 88254
>emb|Z97630.11|HS466N1 Human DNA sequence from clone RP3-466N1 on chromosome 22q12-13, complete sequence Length = 79528 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 aaacagaaaaaacacagaaccaaa 102 ||||||||||||||||||| |||| Sbjct: 62337 aaacagaaaaaacacagaaacaaa 62314
>emb|AL353757.9| Human DNA sequence from clone RP11-439I8 on chromosome 13, complete sequence Length = 59007 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 164 ataactcccttttttctcataggg 187 ||||||| |||||||||||||||| Sbjct: 45077 ataactcacttttttctcataggg 45100
>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24, complete sequence Length = 164577 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gacggagggagtactttgca 23 |||||||||||||||||||| Sbjct: 135816 gacggagggagtactttgca 135797
>emb|AL136078.1|SPAC1002 S.pombe chromosome I cosmid c1002 Length = 40272 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 actttgcataacaaaatcaa 35 |||||||||||||||||||| Sbjct: 6813 actttgcataacaaaatcaa 6794
>emb|BX936331.6| Zebrafish DNA sequence from clone CH211-1C10 in linkage group 3, complete sequence Length = 163806 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 actacaggcaaaacaaacagaaag 131 ||||||||||||||||||| |||| Sbjct: 37252 actacaggcaaaacaaacacaaag 37275
>emb|BX572620.15| Zebrafish DNA sequence from clone CH211-202G13 in linkage group 3, complete sequence Length = 199512 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 actacaggcaaaacaaacagaaag 131 ||||||||||||||||||| |||| Sbjct: 34338 actacaggcaaaacaaacacaaag 34361
>gb|AC093566.3| Homo sapiens chromosome 8, clone CTD-2017M22, complete sequence Length = 177522 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 tccttctccataactccctt 174 |||||||||||||||||||| Sbjct: 107097 tccttctccataactccctt 107116
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gacggagggagtactttgca 23 |||||||||||||||||||| Sbjct: 25409258 gacggagggagtactttgca 25409239 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 79 aaacagaaaaaacacagaaccaa 101 |||||||||||| |||||||||| Sbjct: 26280174 aaacagaaaaaagacagaaccaa 26280196 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 18542108 ggacggagggagtactttg 18542126
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttgc 22 |||||||||||||||||||| Sbjct: 14448240 ggacggagggagtactttgc 14448259 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttgc 22 |||||||||||||||||||| Sbjct: 4793027 ggacggagggagtactttgc 4793008
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttgc 22 |||||||||||||||||||| Sbjct: 5129668 ggacggagggagtactttgc 5129649 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 3 ggacggagggagtactttgcata 25 |||||||||||||||||| |||| Sbjct: 5638334 ggacggagggagtactttacata 5638312
>gb|AC154621.2| Mus musculus BAC clone RP23-323P15 from chromosome 14, complete sequence Length = 211243 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 aaacagaaagttccatgatc 141 |||||||||||||||||||| Sbjct: 113295 aaacagaaagttccatgatc 113314
>dbj|AP002537.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0001B06 Length = 140304 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttgc 22 |||||||||||||||||||| Sbjct: 123106 ggacggagggagtactttgc 123087
>dbj|AP003417.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498B01 Length = 146812 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttgc 22 |||||||||||||||||||| Sbjct: 61699 ggacggagggagtactttgc 61680
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021M10 Length = 163416 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttgc 22 |||||||||||||||||||| Sbjct: 41414 ggacggagggagtactttgc 41433
>dbj|AP004280.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0648E08 Length = 135175 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttgc 22 |||||||||||||||||||| Sbjct: 68431 ggacggagggagtactttgc 68412
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0698A06 Length = 156514 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttgc 22 |||||||||||||||||||| Sbjct: 155626 ggacggagggagtactttgc 155607
>gb|AC007053.15|AC007053 Drosophila melanogaster, chromosome 3R, region 92A1-92A2, BAC clone BACR48K23, complete sequence Length = 173564 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 acaggcaaaacaaacagaaa 130 |||||||||||||||||||| Sbjct: 117834 acaggcaaaacaaacagaaa 117853
>gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64 of 118 of the complete sequence Length = 247876 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 acaggcaaaacaaacagaaa 130 |||||||||||||||||||| Sbjct: 13296 acaggcaaaacaaacagaaa 13315
>dbj|AB083001.1| Xenopus laevis CaM-KK mRNA for calcium/calmodulin-dependent protein kinase kinase, complete cds Length = 1572 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 actttgcataacaaaatcaa 35 |||||||||||||||||||| Sbjct: 1135 actttgcataacaaaatcaa 1154
>gb|BC067641.1| Danio rerio signal recognition particle 72, mRNA (cDNA clone IMAGE:6962108), partial cds Length = 2416 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 caggcaaaacaaacagaaag 131 |||||||||||||||||||| Sbjct: 2233 caggcaaaacaaacagaaag 2214
>emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chromosome X, complete sequence Length = 175057 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 atcactacaggcaaaacaaa 124 |||||||||||||||||||| Sbjct: 73694 atcactacaggcaaaacaaa 73713
>emb|AL611947.11| Mouse DNA sequence from clone RP23-319H15 on chromosome 4, complete sequence Length = 64760 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 acaggcaaaacaaacagaaa 130 |||||||||||||||||||| Sbjct: 40763 acaggcaaaacaaacagaaa 40782
>gb|AF069441.1| Arabidopsis thaliana BAC T19B17 from chromosome IV, near 19.3 cM, complete sequence Length = 105830 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 131 gttccatgatcaccatctt 149 ||||||||||||||||||| Sbjct: 13208 gttccatgatcaccatctt 13190
>gb|AC005563.1| Homo sapiens chromosome 16, cosmid clone 324F6 (LANL), complete sequence Length = 42464 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 162 ccataactcccttttttct 180 ||||||||||||||||||| Sbjct: 11671 ccataactcccttttttct 11689
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 23661 ggacggagggagtactttg 23679
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 140 tcaccatcttggttatcct 158 ||||||||||||||||||| Sbjct: 1954601 tcaccatcttggttatcct 1954619
>gb|AC137586.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0054A16, complete sequence Length = 164605 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 124759 ggacggagggagtactttg 124741
>gb|AC135512.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0057M06, complete sequence Length = 147673 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 11787 ggacggagggagtactttg 11769
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete sequence Length = 137220 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 7808 ggacggagggagtactttg 7826
>gb|AC149072.1| x. tropicalis BAC clone ISB1-341L17 containing genes for vex1 and vent1, complete sequence Length = 65797 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 80 aacagaaaaaacacagaaccaaa 102 |||||||||||||| |||||||| Sbjct: 59059 aacagaaaaaacactgaaccaaa 59037
>gb|AC121279.7| Mus musculus chromosome 3, clone RP23-4F17, complete sequence Length = 207763 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 aaacagaaaaaacacagaa 97 ||||||||||||||||||| Sbjct: 149209 aaacagaaaaaacacagaa 149191
>gb|AC007392.4| Homo sapiens BAC clone RP11-444B4 from 2, complete sequence Length = 193303 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 ttccatgatcaccatcttg 150 ||||||||||||||||||| Sbjct: 14199 ttccatgatcaccatcttg 14217
>gb|AY184478.1| Plum pox virus isolate SoC polyprotein mRNA, complete cds Length = 9795 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 15 tactttgcataacaaaatcaact 37 ||||||||| ||||||||||||| Sbjct: 3717 tactttgcaaaacaaaatcaact 3695
>ref|XM_946733.1| Theileria annulata strain Ankara hypothetical protein (TA15680) partial mRNA Length = 2247 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 22 cataacaaaatcaactatttcct 44 ||||||||||||||| ||||||| Sbjct: 2040 cataacaaaatcaacaatttcct 2018
>gb|AC146720.23| Medicago truncatula clone mth2-17n5, complete sequence Length = 126477 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 83 agaaaaaacacagaaccaa 101 ||||||||||||||||||| Sbjct: 80265 agaaaaaacacagaaccaa 80283
>gb|AC153789.11| Mus musculus chromosome 8, clone RP23-466N7, complete sequence Length = 187150 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 acacagaaccaaactatca 108 ||||||||||||||||||| Sbjct: 144272 acacagaaccaaactatca 144254
>emb|AL627250.8| Human DNA sequence from clone RP13-222H17 on chromosome X Contains a novel pseudogene, complete sequence Length = 177796 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 aaacagaaaaaacacagaa 97 ||||||||||||||||||| Sbjct: 16247 aaacagaaaaaacacagaa 16265
>emb|AL353136.21| Human DNA sequence from clone RP11-133K18 on chromosome X Contains a pyruvate kinase muscle (PKM2) pseudogene and the gene for ectodysplasin A2 isoform receptor (XEDAR), complete sequence Length = 192505 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 116 caaaacaaacagaaagttc 134 ||||||||||||||||||| Sbjct: 181551 caaaacaaacagaaagttc 181533
>emb|AL135924.11| Human DNA sequence from clone RP11-63P12 on chromosome 9q21.11-21.33 Contains the ZNF216 gene for zinc finger protein 216, a novel gene (FLJ37891), an (NM23B) expressed in non-metastatic cells 2 (NME2) pseudogene, a novel gene, the 3' end of the GDA gene for guanine deaminase and a CpG island, complete sequence Length = 162985 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 88 aaacacagaaccaaactat 106 ||||||||||||||||||| Sbjct: 116765 aaacacagaaccaaactat 116747
>emb|AL137139.9| Human DNA sequence from clone RP11-134O15 on chromosome 13 Contains the 3' end of the CLYBL gene for citrate lyase beta like (CLB bA134O15.1) and a CpG island, complete sequence Length = 174128 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 56 gaattcaccctccaattct 74 ||||||||||||||||||| Sbjct: 28235 gaattcaccctccaattct 28217
>emb|AL109924.20|HSDJ495K2 Human DNA sequence from clone RP3-495K2 on chromosome 6q26-27 Contains three novel genes and two CpG islands, complete sequence Length = 130296 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 aaacagaaaaaacacagaa 97 ||||||||||||||||||| Sbjct: 80476 aaacagaaaaaacacagaa 80494
>emb|CR377214.13| Zebrafish DNA sequence from clone CH211-261F19 in linkage group 6, complete sequence Length = 181635 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 aattctcattaaacagaaa 87 ||||||||||||||||||| Sbjct: 69978 aattctcattaaacagaaa 69996
>emb|Y19207.1|HSDNAHB2 Homo sapiens KRTHB2 gene for type II hair keratin 2, exons 1 to 9 Length = 14707 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 80 aacagaaaaaacacagaaccaaa 102 |||||||||||| |||||||||| Sbjct: 9785 aacagaaaaaacccagaaccaaa 9763
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 116 caaaacaaacagaaagttc 134 ||||||||||||||||||| Sbjct: 1826485 caaaacaaacagaaagttc 1826467
>emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segment 3/7 Length = 347365 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ggacggggaattcaccctc 67 ||||||||||||||||||| Sbjct: 341665 ggacggggaattcaccctc 341647
>emb|AL929352.1|PFA929352 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4 Length = 313050 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 aacaaaatcaactatttcc 43 ||||||||||||||||||| Sbjct: 23737 aacaaaatcaactatttcc 23755
>emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01, complete sequence Length = 148353 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 122735 ggacggagggagtactttg 122753
>emb|AL663019.2|OSJN00221 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence Length = 141545 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 79 aaacagaaaaaacacagaaccaa 101 |||||||||||| |||||||||| Sbjct: 56751 aaacagaaaaaagacagaaccaa 56773
>emb|AL607000.3|OSJN00132 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089B03, complete sequence Length = 130910 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 9974 ggacggagggagtactttg 9992
>emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12 Length = 199759 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 gttccatgatcaccatctt 149 ||||||||||||||||||| Sbjct: 96652 gttccatgatcaccatctt 96670
>emb|BX323075.13| Zebrafish DNA sequence from clone CH211-230C4 in linkage group 6, complete sequence Length = 154270 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 aattctcattaaacagaaa 87 ||||||||||||||||||| Sbjct: 45871 aattctcattaaacagaaa 45889
>emb|CR352288.9| Zebrafish DNA sequence from clone CH211-123P18 in linkage group 16, complete sequence Length = 103979 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 80 aacagaaaaaacacagaaccaaa 102 ||||||||||||| ||||||||| Sbjct: 74963 aacagaaaaaacagagaaccaaa 74941
>emb|AL645934.7| Mouse DNA sequence from clone RP23-27P11 on chromosome 11, complete sequence Length = 225839 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 154 atccttctccataactccc 172 ||||||||||||||||||| Sbjct: 12745 atccttctccataactccc 12763
>gb|AC119148.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0035F15, complete sequence Length = 138335 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 130613 ggacggagggagtactttg 130631
>gb|AC020987.8| Homo sapiens chromosome 8, clone RP11-249L4, complete sequence Length = 161153 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 75 cattaaacagaaaaaacacagaa 97 ||||||||||||||| ||||||| Sbjct: 139627 cattaaacagaaaaatcacagaa 139605
>gb|AC126538.1| Homo sapiens chromosome 16 clone CTD-3225F13, complete sequence Length = 188015 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 aaactatcactacaggcaa 118 ||||||||||||||||||| Sbjct: 50330 aaactatcactacaggcaa 50348
>gb|AC113603.6| Homo sapiens chromosome 8, clone RP11-101N9, complete sequence Length = 161374 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 118 aaacaaacagaaagttccatgat 140 |||||||||||||||| |||||| Sbjct: 133785 aaacaaacagaaagttacatgat 133807
>gb|AC023946.5| Homo sapiens chromosome 11, clone RP11-567I13, complete sequence Length = 187380 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 75 cattaaacagaaaaaacac 93 ||||||||||||||||||| Sbjct: 141614 cattaaacagaaaaaacac 141596
>gb|AC116154.2| Homo sapiens chromosome 8, clone RP11-927P11, complete sequence Length = 196518 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 118 aaacaaacagaaagttccatgat 140 |||||||||||||||| |||||| Sbjct: 170701 aaacaaacagaaagttacatgat 170679
>gb|AC027285.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-40I5, complete sequence Length = 241886 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 caccctccaattctcatta 79 ||||||||||||||||||| Sbjct: 171281 caccctccaattctcatta 171263
>gb|AC023822.8| Homo sapiens chromosome 16 clone RP11-124K4, complete sequence Length = 165353 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 162 ccataactcccttttttct 180 ||||||||||||||||||| Sbjct: 161944 ccataactcccttttttct 161962
>gb|AC113559.3| Homo sapiens chromosome 18, clone RP11-114J15, complete sequence Length = 145274 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 attctcattaaacagaaaa 88 ||||||||||||||||||| Sbjct: 22307 attctcattaaacagaaaa 22325
>gb|AC107943.4| Homo sapiens chromosome 8, clone RP11-11I1, complete sequence Length = 195110 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 acaggcaaaacaaacagaa 129 ||||||||||||||||||| Sbjct: 36200 acaggcaaaacaaacagaa 36218
>gb|AC153836.5| Mus musculus 6 BAC RP23-479D21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 231946 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 caccctccaattctcatta 79 ||||||||||||||||||| Sbjct: 111524 caccctccaattctcatta 111506
>gb|AC083760.5| Homo sapiens chromosome 18, clone CTD-388D15, complete sequence Length = 109851 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 attctcattaaacagaaaa 88 ||||||||||||||||||| Sbjct: 40535 attctcattaaacagaaaa 40517
>gb|AC068102.5| Homo sapiens chromosome 8, clone RP11-333M8, complete sequence Length = 174742 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 118 aaacaaacagaaagttccatgat 140 |||||||||||||||| |||||| Sbjct: 133858 aaacaaacagaaagttacatgat 133880
>gb|AC149642.2| Medicago truncatula chromosome 2 BAC clone mth2-62p11, complete sequence Length = 95165 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 acacagaaccaaactatca 108 ||||||||||||||||||| Sbjct: 58878 acacagaaccaaactatca 58896
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 151464 ggacggagggagtactttg 151482
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 tccttacaggacggggaat 59 ||||||||||||||||||| Sbjct: 6201825 tccttacaggacggggaat 6201807
>emb|BX571670.7| Zebrafish DNA sequence from clone DKEY-153J7 in linkage group 17, complete sequence Length = 213920 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 ataacaaaatcaactattt 41 ||||||||||||||||||| Sbjct: 50103 ataacaaaatcaactattt 50085
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 15503878 ggacggagggagtactttg 15503860 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 2598743 ggacggagggagtactttg 2598725
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 9642540 ggacggagggagtactttg 9642558
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 10207948 ggacggagggagtactttg 10207966
>gb|AC098853.2| Homo sapiens BAC clone RP11-343D12 from 2, complete sequence Length = 95180 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 112 caggcaaaacaaacagaaa 130 ||||||||||||||||||| Sbjct: 82424 caggcaaaacaaacagaaa 82442
>gb|AC078865.22| Homo sapiens 12 BAC RP3-416H24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 69230 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 80 aacagaaaaaacacagaaccaaa 102 |||||||||||| |||||||||| Sbjct: 15054 aacagaaaaaacccagaaccaaa 15032
>gb|AC019060.5|AC019060 Homo sapiens BAC clone RP11-125K5 from Y, complete sequence Length = 116795 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 aaacagaaaaaacacagaa 97 ||||||||||||||||||| Sbjct: 15054 aaacagaaaaaacacagaa 15072
>gb|AC126308.6| Homo sapiens 12 BAC RP11-586L15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 85752 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 155 tccttctccataactcccttttt 177 |||||||||||||||| |||||| Sbjct: 65444 tccttctccataactctcttttt 65466
>ref|XM_574974.1| PREDICTED: Rattus norvegicus rho/rac guanine nucleotide exchange factor (GEF) 2 (predicted) (Arhgef2_predicted), mRNA Length = 4228 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 ttaaacagaaaaaacacag 95 ||||||||||||||||||| Sbjct: 3999 ttaaacagaaaaaacacag 4017
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09, complete sequence Length = 106057 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 91126 ggacggagggagtactttg 91108
>gb|AC011727.16| Homo sapiens chromosome 8, clone RP11-10H7, complete sequence Length = 152530 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 acaggcaaaacaaacagaa 129 ||||||||||||||||||| Sbjct: 105480 acaggcaaaacaaacagaa 105498
>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489A05 Length = 158815 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 3 ggacggagggagtactttgcata 25 |||||||||||||||||| |||| Sbjct: 103807 ggacggagggagtactttacata 103785
>emb|BX005258.11| Zebrafish DNA sequence from clone DKEY-77I24 in linkage group 17, complete sequence Length = 193078 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 tctcattaaacagaaaaaa 90 ||||||||||||||||||| Sbjct: 56298 tctcattaaacagaaaaaa 56316
>emb|Y09851.2|PPPNIB Plum pox potyvirus gene for polyprotein Length = 9795 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 15 tactttgcataacaaaatcaact 37 ||||||||| ||||||||||||| Sbjct: 3717 tactttgcaaaacaaaatcaact 3695
>dbj|AP005536.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0055M07 Length = 150901 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 80314 ggacggagggagtactttg 80332
>emb|BX571883.3| Zebrafish DNA sequence from clone DKEY-151P17 in linkage group 18, complete sequence Length = 253172 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 aaacacagaaccaaactat 106 ||||||||||||||||||| Sbjct: 24756 aaacacagaaccaaactat 24774
>emb|BX004794.14| Zebrafish DNA sequence from clone DKEYP-79B10 in linkage group 12, complete sequence Length = 207058 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 74 tcattaaacagaaaaaaca 92 ||||||||||||||||||| Sbjct: 7979 tcattaaacagaaaaaaca 7997
>emb|BX548060.7| Zebrafish DNA sequence from clone CH211-117I10 in linkage group 18, complete sequence Length = 120346 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 88 aaacacagaaccaaactat 106 ||||||||||||||||||| Sbjct: 93308 aaacacagaaccaaactat 93326
>gb|AC007014.1|AC007014 Homo sapiens chromosome 16 clone 66H6, complete sequence Length = 167080 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 aaactatcactacaggcaa 118 ||||||||||||||||||| Sbjct: 107737 aaactatcactacaggcaa 107755
>emb|CR760497.1| Xenopus tropicalis finished cDNA, clone TEgg050k13 Length = 2268 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 attaaacagaaaaaacaca 94 ||||||||||||||||||| Sbjct: 1664 attaaacagaaaaaacaca 1646
>dbj|AP002959.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-158K18, complete sequence Length = 179604 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 117 aaaacaaacagaaagttccatga 139 |||||||||||||| |||||||| Sbjct: 127306 aaaacaaacagaaaattccatga 127284
>gb|BC090078.1| Rattus norvegicus rho/rac guanine nucleotide exchange factor (GEF) 2, mRNA (cDNA clone MGC:95068 IMAGE:7125049), complete cds Length = 4217 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 ttaaacagaaaaaacacag 95 ||||||||||||||||||| Sbjct: 3964 ttaaacagaaaaaacacag 3982
>emb|CR933820.6| Zebrafish DNA sequence from clone DKEY-183J2 in linkage group 11, complete sequence Length = 230267 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 taaacagaaaaaacacaga 96 ||||||||||||||||||| Sbjct: 56698 taaacagaaaaaacacaga 56716
>emb|BX001017.4| Zebrafish DNA sequence from clone RP71-15M4, complete sequence Length = 51364 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 aattcaccctccaattctc 75 ||||||||||||||||||| Sbjct: 6580 aattcaccctccaattctc 6562
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 9648579 ggacggagggagtactttg 9648597
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 15593896 ggacggagggagtactttg 15593878 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 ggacggagggagtactttg 21 ||||||||||||||||||| Sbjct: 2607774 ggacggagggagtactttg 2607756
>ref|NM_001012079.1| Rattus norvegicus rho/rac guanine nucleotide exchange factor (GEF) 2 (Arhgef2), mRNA Length = 4217 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 ttaaacagaaaaaacacag 95 ||||||||||||||||||| Sbjct: 3964 ttaaacagaaaaaacacag 3982
>emb|AL844561.5| Mouse DNA sequence from clone RP23-214D2 on chromosome 2, complete sequence Length = 203361 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 115 gcaaaacaaacagaaagtt 133 ||||||||||||||||||| Sbjct: 61186 gcaaaacaaacagaaagtt 61168
>emb|AL844515.6| Mouse DNA sequence from clone RP23-133G5 on chromosome 2, complete sequence Length = 216464 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 aaaaacacagaaccaaact 104 ||||||||||||||||||| Sbjct: 57374 aaaaacacagaaccaaact 57356
>emb|AL714026.13| Mouse DNA sequence from clone RP23-322I11 on chromosome 2, complete sequence Length = 134955 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 121 caaacagaaagttccatga 139 ||||||||||||||||||| Sbjct: 30219 caaacagaaagttccatga 30201
>dbj|AP004389.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1995B9 Length = 161124 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 118 aaacaaacagaaagttccatgat 140 |||||||||||||||| |||||| Sbjct: 108139 aaacaaacagaaagttacatgat 108117 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,701,597 Number of Sequences: 3902068 Number of extensions: 2701597 Number of successful extensions: 250525 Number of sequences better than 10.0: 112 Number of HSP's better than 10.0 without gapping: 118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 247171 Number of HSP's gapped (non-prelim): 3354 length of query: 187 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 165 effective length of database: 17,147,199,772 effective search space: 2829287962380 effective search space used: 2829287962380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)