>VGLL4_MOUSE (Q80V24) Transcription cofactor vestigial-like protein 4 (Vgl-4)|
          Length = 287

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = +2

Query: 20  SNAPITGAANKAISLSYNHVYMPLPKYFSYVPALLYTNKATSILGGSITLRTMKSACLLR 199
           S +PI  AA  A+SL   H+Y  LP       AL    K +S  G S   R      ++ 
Sbjct: 107 SRSPIERAAAPAVSLHGGHLYASLPSLMEQPLAL---TKNSSDTGRSAVERQQNRPSVIT 163

Query: 200 CQGAG 214
           C  AG
Sbjct: 164 CASAG 168

>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7073

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 136  FVCVEQSWYIRKIFW*GHVYMVIAETDCFI--CCSCYWGI 23
            FVCVE   Y   +F  G+    I    CF+  CC CY+G+
Sbjct: 3737 FVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGL 3773

>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7071

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 136  FVCVEQSWYIRKIFW*GHVYMVIAETDCFI--CCSCYWGI 23
            FVCVE   Y   +F  G+    I    CF+  CC CY+G+
Sbjct: 3735 FVCVE---YYPLLFITGNTLQCIMLVYCFLGYCCCCYFGL 3771

>RP1_PAPHA (Q8MJ06) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1|
           protein homolog)
          Length = 2152

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 208 SRQDGKPQRIYPSANHRTDCQQVATSIDLGTQMTIY 315
           +R  G  QR+YP  N +++ ++++T +   ++  IY
Sbjct: 241 ARLPGISQRVYPKGNAKSESRKISTHMSSSSRSQIY 276

>SDR1_PICAB (Q08632) Short-chain type dehydrogenase/reductase (EC 1.-.-.-)|
          Length = 271

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +2

Query: 32  ITGAANKAISLSYNHVYMPLPKYFSYVPALLYTNKATSILGGSITLRTMKSACL 193
           + G   + I++S + V MP+P+Y +Y  +       T IL   +    + + C+
Sbjct: 154 VRGGGGRIINISSSLVAMPIPRYGAYTASKAAVEMMTRILAQELRGTQITANCV 207

>RP1_HUMAN (P56715) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1|
           protein) (Retinitis pigmentosa 1 protein)
          Length = 2156

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 208 SRQDGKPQRIYPSANHRTDCQQVATSIDLGTQMTIY 315
           +R  G  QR+YP  N +++ ++++T +   ++  IY
Sbjct: 241 ARLPGISQRVYPKGNAKSESRKISTHMSSSSRSQIY 276


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,522,905
Number of Sequences: 219361
Number of extensions: 1141091
Number of successful extensions: 2544
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2544
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)