Clone Name | rbastl13f03 |
---|---|
Clone Library Name | barley_pub |
>SATT_HUMAN (P43007) Neutral amino acid transporter A (SATT)| (Alanine/serine/cysteine/ threonine transporter) (ASCT1) Length = 532 Score = 31.6 bits (70), Expect = 0.52 Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 11/91 (12%) Frame = -1 Query: 261 PQSLLPRRRSNSKQLCKTAIFSLSVFPIHAATGL-----------LQDSHL*EKRELWRR 115 P + R R + L + A+ L+V + A GL Q ++L E+ R Sbjct: 25 PGTAAGRARRCAGFLRRQALVLLTVSGVLAGAGLGAALRGLSLSRTQVTYLAFPGEMLLR 84 Query: 114 ITKMVIMELSVCSACSDSLVLCFFCLMRIGG 22 + +M+I+ L VCS S + L CL R+GG Sbjct: 85 MLRMIILPLVVCSLVSGAASLDASCLGRLGG 115
>SECE_BUCAI (P57152) Preprotein translocase secE subunit| Length = 127 Score = 30.8 bits (68), Expect = 0.89 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +3 Query: 63 YHYRQNKQKVP*SPSWLSFSITPFFLIGDYL 155 +HY +NK K+P W+S SI FF++ ++ Sbjct: 4 HHYNRNKHKIPEKVKWISISI--FFILSFFI 32
>GLGA2_ANASP (Q8Z0Q9) Probable glycogen synthase 2 (EC 2.4.1.21) (Starch| [bacterial glycogen] synthase 2) Length = 492 Score = 30.4 bits (67), Expect = 1.2 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Frame = +2 Query: 152 SCSKPVAAWIGKTDNEK-IAVLHNCFELLLRRGSKLCGVDTTTKGG 286 + KP+ A+IG+ DN+K + ++H+ L +G++ + + T+ G Sbjct: 296 AADKPIIAYIGRLDNQKGVHLVHHAIYHALNKGAQFVLLGSATEAG 341
>GLGA1_ANAVT (Q3M9U1) Glycogen synthase 1 (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase 1) Length = 492 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Frame = +2 Query: 152 SCSKPVAAWIGKTDNEK-IAVLHNCFELLLRRGSKLCGVDTTTKGG 286 + KP+ A+IG+ DN+K + ++H+ L +G++ + + T+ G Sbjct: 296 AADKPIIAYIGRLDNQKGVHLVHHAIYHSLNKGAQFVLLGSATEAG 341
>KCM1_XENLA (Q91636) Kinesin central motor 1 (XKCM1)| Length = 730 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 215 HNCFELLLRRGSKLCGVDTTTKGGGQER 298 H C +++LRRGSKL G + G ER Sbjct: 475 HACLQIILRRGSKLHGKFSLVDLAGNER 502
>CLAT_RAT (P32738) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)| (Choline acetylase) (ChAT) Length = 639 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -1 Query: 234 SNSKQLCKTAIFSLSVFPIHAATGLLQDSHL*EKRELWRRITK 106 S QL +TA+ + + + A TG+ D+HL REL R + K Sbjct: 485 SEKLQLLQTAMQAHKQYTVMAITGMAIDNHLLALRELARDLCK 527
>LHR_ECOLI (P30015) Probable ATP-dependent helicase lhr (EC 3.6.1.-) (Large| helicase-related protein) Length = 1538 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/57 (24%), Positives = 32/57 (56%) Frame = -1 Query: 312 KENIILSCPPPFVVVSTPQSLLPRRRSNSKQLCKTAIFSLSVFPIHAATGLLQDSHL 142 +E L+ PP ++++TP+SL S +++ + + ++ + +HA G + +HL Sbjct: 138 QERSKLTRNPPDILITTPESLYLMLTSRARETLR-GVETVIIDEVHAVAGSKRGAHL 193
>CLAT_MOUSE (Q03059) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)| (Choline acetylase) (ChAT) Length = 640 Score = 27.7 bits (60), Expect = 7.5 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = -1 Query: 234 SNSKQLCKTAIFSLSVFPIHAATGLLQDSHL*EKRELWRRITK 106 S QL + AI + + + + A TG+ D+HL REL R + K Sbjct: 486 SEKLQLLQRAIQAQTEYTVMAITGMAIDNHLLALRELARDLCK 528
>SO1B2_RAT (Q9QZX8) Solute carrier organic anion transporter family member 1B2| (Solute carrier family 21 member 10) (Sodium-independent organic anion-transporting polypeptide 4) (OATP4) (Liver-specific organic anion transporter 1) (rLST-1) Length = 652 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 17 IHPPILIKQKKHRTKLSLQAEQTESSMITIL 109 +H P ++KKH T L+ Q EQ S+M L Sbjct: 293 LHAPKTDEEKKHMTNLTKQEEQDPSNMTGFL 323
>CLAT_PIG (P13222) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)| (Choline acetylase) (ChAT) Length = 640 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -1 Query: 219 LCKTAIFSLSVFPIHAATGLLQDSHL*EKRELWRRITK 106 L K AI + + + + A TG+ D+HL REL R + K Sbjct: 491 LLKDAIRAQTQYTVMAITGMAIDNHLLGLRELAREVCK 528
>PFA5_EMENI (Q5B433) Palmitoyltransferase pfa5 (EC 2.3.1.-) (Protein fatty| acyltransferase 5) Length = 474 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Frame = -2 Query: 251 CCLAGGVIQSSCAR--LQFFHYLSFQSMLLQACCKIVTYEKKGSYGEG*PRW 102 C GGV+ + + +QF Y + M + C I T E + G+ P W Sbjct: 202 CPWVGGVVSETSFKFFIQFVFYTALFCMTVLIVCAIYTAELRQDTGDVNPHW 253
>ARCD_PSEAE (P18275) Arginine/ornithine antiporter| Length = 482 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Frame = +3 Query: 24 LQFSLNRKNTEPNYHYRQNKQKVP*SPSWLS------FSITPFFLIGD 149 + F+ + +T P + R+N +VP + WL+ F + FF GD Sbjct: 308 IMFAAAKDHTMPEFLRRENANQVPANALWLTNICVQVFLVVVFFTSGD 355
>KGUA_STRAW (Q827Q3) Guanylate kinase (EC 2.7.4.8) (GMP kinase)| Length = 197 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 2 LTGRGIHPPILIKQKKHRTKLSLQAE 79 LTGRG PP +I+++ K+ L AE Sbjct: 146 LTGRGTEPPEVIERRLDAAKVELAAE 171
>MTMRD_XENLA (Q6NTN5) Myotubularin-related protein 13 (SET-binding factor 2)| Length = 1873 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/48 (35%), Positives = 19/48 (39%) Frame = +3 Query: 45 KNTEPNYHYRQNKQKVP*SPSWLSFSITPFFLIGDYLAASL*QHGLER 188 KN PN H K P S L I PF + D L Q GL + Sbjct: 464 KNENPNPHMAFQKVPKPTEGSHLRVHILPFSKMNDLKVQELIQEGLNK 511
>DPO3A_DEIRA (Q9RX08) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1335 Score = 27.3 bits (59), Expect = 9.8 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = -1 Query: 261 PQSLLPRRRSNSKQL-CKTAIFSLSVFPIHAATGLLQDSHL*EKRELWRRITKMVIMELS 85 PQ +P RS +++L +T ++ +P H GLL+D EL V+ Sbjct: 317 PQLPIPEGRSMAEELRVQTYAGAVKRYPAHLTEGLLRDYAARSLAELGEADAARVLKRTG 376 Query: 84 VCSACSDSLVLCFFCLMRIG 25 C + S L + L +G Sbjct: 377 GCDSASCDLDTLYTLLAFLG 396
>CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)| (Choline acetylase) (ChAT) Length = 748 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = -1 Query: 219 LCKTAIFSLSVFPIHAATGLLQDSHL*EKRELWRRITK 106 L K AI + + + + A TG+ D+HL REL R + K Sbjct: 599 LLKDAIRAQTAYTVMAITGMAIDNHLLALRELARAMCK 636 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,324,237 Number of Sequences: 219361 Number of extensions: 1004369 Number of successful extensions: 2403 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2368 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2403 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)