ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACROL_HUMAN (P58840) Hypothetical acrosin-like protease (EC 3.4.... 31 0.90
2APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 31 0.90
3MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 p... 30 1.5
4PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 29 2.6
5Y9128_RHOBA (Q7UM18) UPF0314 protein RB9128 29 3.4
6TRMB_NITOC (Q3JCB2) tRNA (guanine-N(7)-)-methyltransferase (EC 2... 28 5.8
7GALE_NEIGO (Q05026) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galact... 28 5.8
8ACRO_RABIT (P48038) Acrosin precursor (EC 3.4.21.10) [Contains: ... 28 5.8
9RT15_HUMAN (P82914) 28S ribosomal protein S15, mitochondrial pre... 28 7.6
10ACRO_HUMAN (P10323) Acrosin precursor (EC 3.4.21.10) [Contains: ... 28 7.6
11PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic... 27 10.0
12MRP_AQUAE (O66946) Protein mrp homolog 27 10.0
13MYST3_RAT (Q5TKR9) Histone acetyltransferase MYST3 (EC 2.3.1.48)... 27 10.0
14CHKA_RAT (Q01134) Choline kinase alpha (EC 2.7.1.32) (CK) (CHETK... 27 10.0
15MTA1_SORMA (O42837) Mating type protein SmtA-1 27 10.0

>ACROL_HUMAN (P58840) Hypothetical acrosin-like protease (EC 3.4.21.-)|
           (Fragment)
          Length = 232

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = -1

Query: 291 PPLPSPMIQDPPPQSSQPLAD*KKIPALSFFRLLISRLQSLFFSLYIEFLEGK 133
           PP PSP+   PPP    P +  K    LSF +    RLQ L     IE L+GK
Sbjct: 166 PPPPSPLPPPPPPPPPTPSSTTKLPQGLSFAK----RLQQL-----IEVLKGK 209



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 294 RPPLPSPMIQDP-PPQSSQPLAD*KKIPALSFF 199
           +PP PSP    P PP  S P    K IPA+ FF
Sbjct: 97  KPPAPSPKPSPPKPPAPSPPKPQNKTIPAVFFF 129



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>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor|
           (Muscle attachment abnormal protein 3)
          Length = 3767

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 163 QSVYRVLRGQESFGARVILSFLNSFVSGRSTPCYQKMIRECWPLFTCFNE 14
           ++V + L G ++ G +   + LN  +  R+ PC    + +C P+  CF+E
Sbjct: 589 ETVCKCLLGYKNVGTK---THLNCQMEKRANPCQDYSLHDCDPVAECFSE 635



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 267 QDPPPQSSQPLAD*KKIPALSFFRLLISRLQSLFFSLYIEFL 142
           QDPPP+   PL D  ++   SF+R LI+   +    LY+  +
Sbjct: 18  QDPPPE---PLFDATELGKWSFYRALIAEFIATLLFLYVTIM 56



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>Y9128_RHOBA (Q7UM18) UPF0314 protein RB9128|
          Length = 201

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 134 REFWCPCHSFIPKFICIWQKHS 69
           R FWC C S++P    IW  H+
Sbjct: 44  RRFWCECGSWVPWSWDIWTAHN 65



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>TRMB_NITOC (Q3JCB2) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 236

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 133 ESFGARVILSFLNSFVSGRSTPCYQKMIRECWPLF 29
           ESF  R I SF+     GR TP  +K +   WP +
Sbjct: 12  ESFQPRPITSFVRR--EGRMTPAQKKALEHLWPRY 44



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>GALE_NEIGO (Q05026) UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase)|
           (UDP-galactose 4-epimerase)
          Length = 338

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 88  VSGRSTPCYQKMIRECWPLFTCFNEH 11
           ++GR+ P YQ  IR+C  L   F+EH
Sbjct: 47  ITGRNIPFYQGDIRDCQILRQIFSEH 72



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>ACRO_RABIT (P48038) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light|
           chain; Acrosin heavy chain]
          Length = 431

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/52 (40%), Positives = 24/52 (46%)
 Frame = -1

Query: 291 PPLPSPMIQDPPPQSSQPLAD*KKIPALSFFRLLISRLQSLFFSLYIEFLEG 136
           PP P P    PPP    P A  K   ALSF +    RLQ L     +E L+G
Sbjct: 360 PPPPPPPPPPPPPPPPPPPASTKPPQALSFAK----RLQQL-----VEVLKG 402



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>RT15_HUMAN (P82914) 28S ribosomal protein S15, mitochondrial precursor (S15mt)|
           (MRP-S15)
          Length = 257

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = -1

Query: 312 SRAILLRPPLPSPMIQDPPPQSSQPLAD*KKIPALSFFRLLISRLQSLFFSLYIEFLEGK 133
           +R  ++R P  S +  DPPP  S  L D + +P +     ++ RL SL  +   E L+ K
Sbjct: 50  ARGYVVRKPAQSRLDDDPPP--STLLKDYQNVPGIEKVDDVVKRLLSLEMANKKEMLKIK 107

Query: 132 R 130
           +
Sbjct: 108 Q 108



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>ACRO_HUMAN (P10323) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light|
           chain; Acrosin heavy chain]
          Length = 421

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 21/53 (39%), Positives = 25/53 (47%)
 Frame = -1

Query: 291 PPLPSPMIQDPPPQSSQPLAD*KKIPALSFFRLLISRLQSLFFSLYIEFLEGK 133
           PP  SP+   PPP    P +  K    LSF +    RLQ L     IE L+GK
Sbjct: 355 PPPASPLPPPPPPPPPTPSSTTKLPQGLSFAK----RLQQL-----IEVLKGK 398



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>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)|
           (PIP2a)
          Length = 287

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 267 QDPPPQSSQPLAD*KKIPALSFFRLLISRLQSLFFSLYIEFL 142
           QDPPP    P  D  ++   SF+R +I+   +    LYI  L
Sbjct: 19  QDPPPA---PFIDGAELKKWSFYRAVIAEFVATLLFLYITVL 57



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>MRP_AQUAE (O66946) Protein mrp homolog|
          Length = 364

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 267 QDPPPQSSQPLAD*KKIPAL 208
           Q PPPQ+ QP+   KK+P +
Sbjct: 92  QTPPPQTQQPMFTRKKVPGV 111



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>MYST3_RAT (Q5TKR9) Histone acetyltransferase MYST3 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 3) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            3) (Monocytic leukemia zinc finger protein) (Monocytic
            leukemia zinc finger homolog)
          Length = 1998

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 294  RPPLPSPMIQDPPPQSSQP 238
            +PP P P  Q PPP   QP
Sbjct: 1666 QPPPPQPQQQPPPPPQQQP 1684



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>CHKA_RAT (Q01134) Choline kinase alpha (EC 2.7.1.32) (CK) (CHETK-alpha)|
          Length = 453

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 312 SRAILLRPPLPSPMIQDPPPQSSQPLAD 229
           S+ + L PP P P+   PPP  S PLAD
Sbjct: 51  SQPLALPPPPPPPLPLPPPP--SPPLAD 76



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>MTA1_SORMA (O42837) Mating type protein SmtA-1|
          Length = 306

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 303 ILLRPPLPSPMIQDPPPQSSQPLAD*KKIPALSFFRLLISRLQSLF 166
           + + PP P P+ Q P P S  P A  KK+     FR   S L S F
Sbjct: 27  LAMMPPGPGPVRQIPEPVSQAP-APKKKVNGFMGFRSYYSPLFSQF 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,545,732
Number of Sequences: 219361
Number of extensions: 580144
Number of successful extensions: 2719
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2681
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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