ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 161 2e-36
2gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome... 161 2e-36
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 161 2e-36
4dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
5gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 96 8e-17
6gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, comp... 46 0.067
7emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chr... 46 0.067
8gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, comp... 46 0.067
9gb|AC099661.11| Homo sapiens 3 BAC RP11-110C15 (Roswell Park Can... 42 1.0
10gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete... 42 1.0
11ref|XM_464737.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.1
12gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete... 40 4.1
13gb|BC076483.1| Danio rerio zgc:92467, mRNA (cDNA clone MGC:92467... 40 4.1
14emb|CT009723.4| Mouse DNA sequence from clone RP23-12L5 on chrom... 40 4.1
15gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosom... 40 4.1
16gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosom... 40 4.1
17ref|NM_001003494.1| Danio rerio zgc:92467 (zgc:92467), mRNA 40 4.1
18gb|AC106029.8| Homo sapiens chromosome 15, clone CTD-2538I11, co... 40 4.1
19gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, c... 40 4.1
20gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence 40 4.1
21gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, com... 40 4.1
22gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 4.1
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
24dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
25dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.1
26emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on ch... 40 4.1
27emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 4.1
28gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, comple... 40 4.1
29gb|AC174070.1| Homo sapiens chromosome 15 clone WI2-635I4, compl... 40 4.1 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  161 bits (81), Expect = 2e-36
 Identities = 230/278 (82%), Gaps = 5/278 (1%)
 Strand = Plus / Minus

                                                                            
Query: 37       gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 96
                |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 10412390 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 10412331

                                                                            
Query: 97       ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 154
                | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 10412330 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 10412271

                                                                            
Query: 155      tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 214
                ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 10412270 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 10412211

                                                                            
Query: 215      gggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtatcatc 274
                |  | |   ||||||||||||||||||||||||||||||  | || ||| |||| || ||
Sbjct: 10412210 gaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 10412154

                                                      
Query: 275      ggtgatggtagtggcggtcgcagtagtatggctcggct 312
                |||||| || || || ||||| || || ||||||||||
Sbjct: 10412153 ggtgatcgtcgtcgccgtcgcggtggtttggctcggct 10412116
to top
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score =  161 bits (81), Expect = 2e-36
 Identities = 230/278 (82%), Gaps = 5/278 (1%)
 Strand = Plus / Minus

                                                                         
Query: 37    gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 96
             |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 68943 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 68884

                                                                         
Query: 97    ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 154
             | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 68883 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 68824

                                                                         
Query: 155   tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 214
             ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 68823 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 68764

                                                                         
Query: 215   gggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtatcatc 274
             |  | |   ||||||||||||||||||||||||||||||  | || ||| |||| || ||
Sbjct: 68763 gaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 68707

                                                   
Query: 275   ggtgatggtagtggcggtcgcagtagtatggctcggct 312
             |||||| || || || ||||| || || ||||||||||
Sbjct: 68706 ggtgatcgtcgtcgccgtcgcggtggtttggctcggct 68669
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  161 bits (81), Expect = 2e-36
 Identities = 230/278 (82%), Gaps = 5/278 (1%)
 Strand = Plus / Minus

                                                                            
Query: 37       gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 96
                |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 10410491 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 10410432

                                                                            
Query: 97       ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 154
                | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 10410431 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 10410372

                                                                            
Query: 155      tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 214
                ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 10410371 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 10410312

                                                                            
Query: 215      gggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtatcatc 274
                |  | |   ||||||||||||||||||||||||||||||  | || ||| |||| || ||
Sbjct: 10410311 gaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 10410255

                                                      
Query: 275      ggtgatggtagtggcggtcgcagtagtatggctcggct 312
                |||||| || || || ||||| || || ||||||||||
Sbjct: 10410254 ggtgatcgtcgtcgccgtcgcggtggtttggctcggct 10410217
to top
>dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B05, full
            insert sequence
          Length = 1650

 Score =  161 bits (81), Expect = 2e-36
 Identities = 230/278 (82%), Gaps = 5/278 (1%)
 Strand = Plus / Minus

                                                                        
Query: 37   gccagcactcacgaatcatcttctgataacaaggagtgcttctgccagatacaaatgaat 96
            |||||||||| |  |||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 1603 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 1544

                                                                        
Query: 97   ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 154
            | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 1543 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 1484

                                                                        
Query: 155  tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 214
            ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 1483 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 1424

                                                                        
Query: 215  gggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtatcatc 274
            |  | |   ||||||||||||||||||||||||||||||  | || ||| |||| || ||
Sbjct: 1423 gaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgtcgtc 1367

                                                  
Query: 275  ggtgatggtagtggcggtcgcagtagtatggctcggct 312
            |||||| || || || ||||| || || ||||||||||
Sbjct: 1366 ggtgatcgtcgtcgccgtcgcggtggtttggctcggct 1329
to top
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03,
              from chromosome 3, complete sequence
          Length = 125800

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 134/162 (82%), Gaps = 3/162 (1%)
 Strand = Plus / Minus

                                                                          
Query: 151    tatatacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaag 210
              ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||
Sbjct: 125740 tatatacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaag 125681

                                                                          
Query: 211    agctgggattttctttcagtctgcaagaggctgactactctgtggtggtggatcttgtat 270
              | | |  | |   ||||||||||||||||||||||||||||||  | || ||| |||| |
Sbjct: 125680 aaccgaaact---tttcagtctgcaagaggctgactactctgtaatagtcgattttgtgt 125624

                                                        
Query: 271    catcggtgatggtagtggcggtcgcagtagtatggctcggct 312
              | |||||||| || || || ||||| || || ||||||||||
Sbjct: 125623 cgtcggtgatcgtcgtcgccgtcgcggtggtttggctcggct 125582
to top
>gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, complete sequence
          Length = 161160

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 146    aactctatatacagactgaaaaa 168
              |||||||||||||||||||||||
Sbjct: 155387 aactctatatacagactgaaaaa 155409
to top
>emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chromosome X, complete
             sequence
          Length = 22695

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 199   gaagaaactaagagctgggattt 221
             |||||||||||||||||||||||
Sbjct: 20220 gaagaaactaagagctgggattt 20242
to top
>gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, complete sequence
          Length = 103709

 Score = 46.1 bits (23), Expect = 0.067
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 146   aactctatatacagactgaaaaa 168
             |||||||||||||||||||||||
Sbjct: 25345 aactctatatacagactgaaaaa 25323
to top
>gb|AC099661.11| Homo sapiens 3 BAC RP11-110C15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155898

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 81     ccagatacaaatgaatttagg 101
              |||||||||||||||||||||
Sbjct: 132468 ccagatacaaatgaatttagg 132448
to top
>gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete sequence
          Length = 113862

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    acaaatgaatttaggaatgaa 107
             |||||||||||||||||||||
Sbjct: 53216 acaaatgaatttaggaatgaa 53236
to top
>ref|XM_464737.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 597

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 282 gtagtggcggtcgcagtagt 301
           ||||||||||||||||||||
Sbjct: 279 gtagtggcggtcgcagtagt 260
to top
>gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete sequence
          Length = 173785

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    aactctatatacagactgaa 165
              ||||||||||||||||||||
Sbjct: 112238 aactctatatacagactgaa 112219
to top
>gb|BC076483.1| Danio rerio zgc:92467, mRNA (cDNA clone MGC:92467 IMAGE:7043653),
            complete cds
          Length = 1420

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  ccaaaactctcttgccctct 142
            ||||||||||||||||||||
Sbjct: 1156 ccaaaactctcttgccctct 1175
to top
>emb|CT009723.4| Mouse DNA sequence from clone RP23-12L5 on chromosome 9, complete
             sequence
          Length = 210030

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 164   aaaaatagactctggagtctactt 187
             |||||| |||||||||||||||||
Sbjct: 33094 aaaaattgactctggagtctactt 33071
to top
>gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosome 2, complete sequence
          Length = 181527

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   tttctttcagtctgcaagag 239
             ||||||||||||||||||||
Sbjct: 82464 tttctttcagtctgcaagag 82445
to top
>gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosome 9, complete sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 164    aaaaatagactctggagtctactt 187
              |||||| |||||||||||||||||
Sbjct: 199654 aaaaattgactctggagtctactt 199677
to top
>ref|NM_001003494.1| Danio rerio zgc:92467 (zgc:92467), mRNA
          Length = 1420

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  ccaaaactctcttgccctct 142
            ||||||||||||||||||||
Sbjct: 1156 ccaaaactctcttgccctct 1175
to top
>gb|AC106029.8| Homo sapiens chromosome 15, clone CTD-2538I11, complete sequence
          Length = 180591

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     acaaatgaatttaggaatga 106
              ||||||||||||||||||||
Sbjct: 143624 acaaatgaatttaggaatga 143605
to top
>gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, complete sequence
          Length = 188605

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     acaaatgaatttaggaatga 106
              ||||||||||||||||||||
Sbjct: 138484 acaaatgaatttaggaatga 138465
to top
>gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence
          Length = 178815

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     acaaatgaatttaggaatga 106
              ||||||||||||||||||||
Sbjct: 152752 acaaatgaatttaggaatga 152771
to top
>gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, complete sequence
          Length = 64373

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    acaaatgaatttaggaatga 106
             ||||||||||||||||||||
Sbjct: 16772 acaaatgaatttaggaatga 16791
to top
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    ttattaatagtctgaagaaa 205
              ||||||||||||||||||||
Sbjct: 766718 ttattaatagtctgaagaaa 766737
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 282     gtagtggcggtcgcagtagt 301
               ||||||||||||||||||||
Sbjct: 7024168 gtagtggcggtcgcagtagt 7024149
to top
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0495C02
          Length = 151467

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   gtagtggcggtcgcagtagt 301
             ||||||||||||||||||||
Sbjct: 27587 gtagtggcggtcgcagtagt 27568
to top
>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0470A03
          Length = 133167

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 282    gtagtggcggtcgcagtagt 301
              ||||||||||||||||||||
Sbjct: 117790 gtagtggcggtcgcagtagt 117771
to top
>emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on chromosome 2, complete
             sequence
          Length = 145652

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   tttctttcagtctgcaagag 239
             ||||||||||||||||||||
Sbjct: 46654 tttctttcagtctgcaagag 46635
to top
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 240     gctgactactctgtggtggt 259
               ||||||||||||||||||||
Sbjct: 1107079 gctgactactctgtggtggt 1107060
to top
>gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, complete sequence
          Length = 181063

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 167    aatagactctggagtctacttattaata 194
              ||||| |||||||||| |||||||||||
Sbjct: 116693 aatagtctctggagtccacttattaata 116720
to top
>gb|AC174070.1| Homo sapiens chromosome 15 clone WI2-635I4, complete sequence
          Length = 38013

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    acaaatgaatttaggaatga 106
             ||||||||||||||||||||
Sbjct: 12922 acaaatgaatttaggaatga 12941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,315,869
Number of Sequences: 3902068
Number of extensions: 3315869
Number of successful extensions: 63919
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63805
Number of HSP's gapped (non-prelim): 114
length of query: 312
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 290
effective length of database: 17,147,199,772
effective search space: 4972687933880
effective search space used: 4972687933880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top