ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL604063.4| Mouse DNA sequence from clone RP23-467J12 on chr... 48 0.016
2gb|AC008558.7|AC008558 Homo sapiens chromosome 5 clone CTC-531G1... 48 0.016
3gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosom... 46 0.064
4gb|AC132437.3| Mus musculus BAC clone RP23-230M17 from chromosom... 46 0.064
5gb|AC153364.4| Mus musculus BAC clone RP23-35J21 from chromosome... 46 0.064
6gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome ... 46 0.064
7gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome 44 0.25
8gb|AC096745.2| Homo sapiens BAC clone RP11-358D17 from 4, comple... 44 0.25
9gb|AC018742.5| Homo sapiens BAC clone RP11-644J14 from 2, comple... 44 0.25
10emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-8... 44 0.25
11gb|DQ068952.1| Phanogenia gracilis mitochondrion, complete genome 44 0.25
12emb|AL353681.8| Human DNA sequence from clone RP1-158P9 on chrom... 42 1.0
13gb|AC155841.6| Mus musculus 6 BAC RP24-490O5 (Roswell Park Cance... 42 1.0
14gb|AC153842.9| Mus musculus 6 BAC RP23-348K12 (Roswell Park Canc... 42 1.0
15emb|X91015.1|CCUA1MRN C.carpio Cyca-UA1*01 mRNA MHC class I protein 42 1.0
16emb|X91028.1|CCUA1EX48 C.carpio Cyca-UA1*02 gene (exon 4-8) 42 1.0
17dbj|AB018581.1| Cyprinus carpio mRNA for MHC class I antigen, co... 42 1.0
18gb|AC108806.10| Mus musculus chromosome 14, clone RP23-246G7, co... 40 4.0
19gb|AC139750.3| Mus musculus BAC clone RP24-444K8 from chromosome... 40 4.0
20gb|AC006348.3| Homo sapiens PAC clone RP5-876K2 from 7, complete... 40 4.0
21gb|AC163618.4| Mus musculus BAC clone RP24-158G13 from chromosom... 40 4.0
22gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence 40 4.0
23emb|AL031115.2|HS598A24 Human DNA sequence from clone RP4-598A24... 40 4.0
24emb|X52106.1|NIMIDRPM Neurospora intermedia mitochondrial plasmi... 40 4.0
25emb|Z99130.1|HS83L6 Human DNA sequence from clone RP1-83L6 on ch... 40 4.0
26emb|BX897677.1| Neurospora crassa DNA linkage group VI BAC clone... 40 4.0
27emb|AL646051.19| Mouse DNA sequence from clone RP23-222M22 on ch... 40 4.0
28gb|AC097714.3| Homo sapiens BAC clone RP11-324H7 from 4, complet... 40 4.0
29gb|AC110002.2| Homo sapiens chromosome 5 clone RP11-125A13, comp... 40 4.0
30gb|AC008547.6| Homo sapiens chromosome 5 clone CTC-502M5, comple... 40 4.0
31gb|AC040171.4| Homo sapiens chromosome 16 clone RP11-52D13, comp... 40 4.0
32gb|AC026701.6| Homo sapiens chromosome 5 clone CTC-547D20, compl... 40 4.0
33gb|AC008525.7|AC008525 Homo sapiens chromosome 5 clone CTC-467M3... 40 4.0
34gb|AF332859.1|AF332859S1 Mus musculus diadenosine triphosphate h... 40 4.0
35gb|AF517943.1| Helobdella robusta hedgehog-like protein (hh) mRN... 40 4.0
36gb|AC008507.11| Homo sapiens chromosome 19 clone CTC-448F2, comp... 40 4.0
37gb|AC151831.3| Mus musculus BAC clone RP24-81D24 from chromosome... 40 4.0
38gb|AC015842.9|AC015842 Homo sapiens chromosome 17, clone RP11-35... 40 4.0
39emb|CT025686.7| Mouse DNA sequence from clone RP24-273I13 on chr... 40 4.0
40emb|AL844882.9| Mouse DNA sequence from clone RP23-360H15 on chr... 40 4.0
41emb|AL671925.4| Mouse DNA sequence from clone RP23-236O21 on chr... 40 4.0
42gb|AC161208.9| Mus musculus chromosome 5, clone RP23-71M14, comp... 40 4.0 
>emb|AL604063.4| Mouse DNA sequence from clone RP23-467J12 on chromosome 11, complete
             sequence
          Length = 146759

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 97    taactttgattctttaaaaataaa 120
             ||||||||||||||||||||||||
Sbjct: 42422 taactttgattctttaaaaataaa 42445
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>gb|AC008558.7|AC008558 Homo sapiens chromosome 5 clone CTC-531G16, complete sequence
          Length = 210532

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 15     aaacagagtaaacttatttattacagca 42
              |||||||||||| |||||||||||||||
Sbjct: 124834 aaacagagtaaaattatttattacagca 124807
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>gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosome 10, complete
             sequence
          Length = 208709

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 101   tttgattctttaaaaataaataa 123
             |||||||||||||||||||||||
Sbjct: 45907 tttgattctttaaaaataaataa 45929
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>gb|AC132437.3| Mus musculus BAC clone RP23-230M17 from chromosome 5, complete sequence
          Length = 176825

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 101    tttgattctttaaaaataaataa 123
              |||||||||||||||||||||||
Sbjct: 124153 tttgattctttaaaaataaataa 124175
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>gb|AC153364.4| Mus musculus BAC clone RP23-35J21 from chromosome 10, complete sequence
          Length = 231668

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 101    tttgattctttaaaaataaataa 123
              |||||||||||||||||||||||
Sbjct: 190750 tttgattctttaaaaataaataa 190772
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>gb|AC157588.8| Mus musculus BAC clone RP24-95J4 from chromosome 5, complete sequence
          Length = 220137

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 101   tttgattctttaaaaataaataa 123
             |||||||||||||||||||||||
Sbjct: 29710 tttgattctttaaaaataaataa 29732
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>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome
          Length = 1842899

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 226    atgaatggccatcaaccaataa 247
              ||||||||||||||||||||||
Sbjct: 706553 atgaatggccatcaaccaataa 706532
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>gb|AC096745.2| Homo sapiens BAC clone RP11-358D17 from 4, complete sequence
          Length = 158952

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 102    ttgattctttaaaaataaataa 123
              ||||||||||||||||||||||
Sbjct: 127502 ttgattctttaaaaataaataa 127481
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>gb|AC018742.5| Homo sapiens BAC clone RP11-644J14 from 2, complete sequence
          Length = 174225

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 97    taactttgattctttaaaaata 118
             ||||||||||||||||||||||
Sbjct: 57096 taactttgattctttaaaaata 57117
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>emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-898B23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201794

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 96     ttaactttgattctttaaaaataaat 121
              |||||||||||| |||||||||||||
Sbjct: 168330 ttaactttgattttttaaaaataaat 168305
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>gb|DQ068952.1| Phanogenia gracilis mitochondrion, complete genome
          Length = 15892

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 102  ttgattctttaaaaataaataa 123
            ||||||||||||||||||||||
Sbjct: 1147 ttgattctttaaaaataaataa 1126
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>emb|AL353681.8| Human DNA sequence from clone RP1-158P9 on chromosome 1 Contains a
             novel gene and a pseudogene, complete sequence
          Length = 113539

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 94    cattaactttgattctttaaaaata 118
             |||||| ||||||||||||||||||
Sbjct: 23137 cattaattttgattctttaaaaata 23113
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>gb|AC155841.6| Mus musculus 6 BAC RP24-490O5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 141583

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 103    tgattctttaaaaataaataa 123
              |||||||||||||||||||||
Sbjct: 141418 tgattctttaaaaataaataa 141438
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>gb|AC153842.9| Mus musculus 6 BAC RP23-348K12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 174100

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 103   tgattctttaaaaataaataa 123
             |||||||||||||||||||||
Sbjct: 96869 tgattctttaaaaataaataa 96889
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>emb|X91015.1|CCUA1MRN C.carpio Cyca-UA1*01 mRNA MHC class I protein
          Length = 2050

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  tgattctttaaaaataaataa 123
            |||||||||||||||||||||
Sbjct: 2000 tgattctttaaaaataaataa 2020
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>emb|X91028.1|CCUA1EX48 C.carpio Cyca-UA1*02 gene (exon 4-8)
          Length = 3356

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  tgattctttaaaaataaataa 123
            |||||||||||||||||||||
Sbjct: 3220 tgattctttaaaaataaataa 3240
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>dbj|AB018581.1| Cyprinus carpio mRNA for MHC class I antigen, complete cds
          Length = 2179

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 103  tgattctttaaaaataaataa 123
            |||||||||||||||||||||
Sbjct: 2152 tgattctttaaaaataaataa 2172
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>gb|AC108806.10| Mus musculus chromosome 14, clone RP23-246G7, complete sequence
          Length = 189619

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    actttgattctttaaaaata 118
             ||||||||||||||||||||
Sbjct: 73626 actttgattctttaaaaata 73607
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>gb|AC139750.3| Mus musculus BAC clone RP24-444K8 from chromosome 17, complete sequence
          Length = 160413

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   ttctttaaaaataaataagt 125
             ||||||||||||||||||||
Sbjct: 97735 ttctttaaaaataaataagt 97716
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>gb|AC006348.3| Homo sapiens PAC clone RP5-876K2 from 7, complete sequence
          Length = 135883

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   ttctttaaaaataaataagt 125
             ||||||||||||||||||||
Sbjct: 97879 ttctttaaaaataaataagt 97860
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>gb|AC163618.4| Mus musculus BAC clone RP24-158G13 from chromosome 3, complete sequence
          Length = 198108

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    acacaacataaaagtacaaa 155
              ||||||||||||||||||||
Sbjct: 146274 acacaacataaaagtacaaa 146293
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>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence
          Length = 138186

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     gggtgttccacaacaaacag 20
             ||||||||||||||||||||
Sbjct: 60998 gggtgttccacaacaaacag 61017
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>emb|AL031115.2|HS598A24 Human DNA sequence from clone RP4-598A24 on chromosome Xp11.1-11.23
             Contains the ZXDB gene for zinc finger, X-linked,
             duplicated B and a CpG island, complete sequence
          Length = 96558

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 101   tttgattctttaaaaataaataag 124
             |||| |||||||||||||||||||
Sbjct: 82604 tttgtttctttaaaaataaataag 82581
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>emb|X52106.1|NIMIDRPM Neurospora intermedia mitochondrial plasmid DNA for DNA polymerase
            and RNA polymerase
          Length = 8642

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  attctttaaaaataaataag 124
            ||||||||||||||||||||
Sbjct: 6676 attctttaaaaataaataag 6657
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>emb|Z99130.1|HS83L6 Human DNA sequence from clone RP1-83L6 on chromosome Xp11.1-11.22,
            complete sequence
          Length = 61187

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 101  tttgattctttaaaaataaataag 124
            |||| |||||||||||||||||||
Sbjct: 9363 tttgtttctttaaaaataaataag 9386
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>emb|BX897677.1| Neurospora crassa DNA linkage group VI BAC clone B15B10
          Length = 77986

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   cgagagcaaagaggactaaa 200
             ||||||||||||||||||||
Sbjct: 33297 cgagagcaaagaggactaaa 33278
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>emb|AL646051.19| Mouse DNA sequence from clone RP23-222M22 on chromosome 11 Contains the
             5' end of the Hs3st3a gene for heparan sulfate
             (glucosamine) 3-O-sulfotransferase 3A and a CpG island,
             complete sequence
          Length = 144847

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   attctttaaaaataaataag 124
             ||||||||||||||||||||
Sbjct: 15560 attctttaaaaataaataag 15579
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>gb|AC097714.3| Homo sapiens BAC clone RP11-324H7 from 4, complete sequence
          Length = 181756

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    ctttgattctttaaaaataa 119
              ||||||||||||||||||||
Sbjct: 137001 ctttgattctttaaaaataa 136982
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>gb|AC110002.2| Homo sapiens chromosome 5 clone RP11-125A13, complete sequence
          Length = 168708

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    actttgattctttaaaaata 118
             ||||||||||||||||||||
Sbjct: 83924 actttgattctttaaaaata 83943
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>gb|AC008547.6| Homo sapiens chromosome 5 clone CTC-502M5, complete sequence
          Length = 114005

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    actttgattctttaaaaata 118
             ||||||||||||||||||||
Sbjct: 39278 actttgattctttaaaaata 39259
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>gb|AC040171.4| Homo sapiens chromosome 16 clone RP11-52D13, complete sequence
          Length = 151368

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     ttccacaacaaacagagtaa 25
             ||||||||||||||||||||
Sbjct: 65424 ttccacaacaaacagagtaa 65443
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>gb|AC026701.6| Homo sapiens chromosome 5 clone CTC-547D20, complete sequence
          Length = 87338

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 100  ctttgattctttaaaaataaataa 123
            |||||||||||| |||||||||||
Sbjct: 4736 ctttgattcttttaaaataaataa 4713
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>gb|AC008525.7|AC008525 Homo sapiens chromosome 5 clone CTC-467M3, complete sequence
          Length = 123238

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 100   ctttgattctttaaaaataaataa 123
             |||||||||||| |||||||||||
Sbjct: 50657 ctttgattcttttaaaataaataa 50680
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>gb|AF332859.1|AF332859S1 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exon 5 and
              partial cds
          Length = 270491

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 102    ttgattctttaaaaataaataagt 125
              ||||||||||||||| ||||||||
Sbjct: 240268 ttgattctttaaaaaaaaataagt 240291
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>gb|AF517943.1| Helobdella robusta hedgehog-like protein (hh) mRNA, complete cds
          Length = 3480

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 61   tgaaaagaaaatcgtttgct 80
            ||||||||||||||||||||
Sbjct: 1993 tgaaaagaaaatcgtttgct 1974
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>gb|AC008507.11| Homo sapiens chromosome 19 clone CTC-448F2, complete sequence
          Length = 179005

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    actttgattctttaaaaata 118
             ||||||||||||||||||||
Sbjct: 55437 actttgattctttaaaaata 55456
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>gb|AC151831.3| Mus musculus BAC clone RP24-81D24 from chromosome 14, complete sequence
          Length = 212749

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     ggtcattaactttgattctt 110
              ||||||||||||||||||||
Sbjct: 137969 ggtcattaactttgattctt 137988
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>gb|AC015842.9|AC015842 Homo sapiens chromosome 17, clone RP11-350B3, complete sequence
          Length = 115933

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   attctttaaaaataaataag 124
             ||||||||||||||||||||
Sbjct: 46208 attctttaaaaataaataag 46227
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>emb|CT025686.7| Mouse DNA sequence from clone RP24-273I13 on chromosome 14, complete
             sequence
          Length = 186233

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    actttgattctttaaaaata 118
             ||||||||||||||||||||
Sbjct: 93441 actttgattctttaaaaata 93460
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>emb|AL844882.9| Mouse DNA sequence from clone RP23-360H15 on chromosome 2, complete
             sequence
          Length = 167978

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   ttaaaaataaataagtccta 129
             ||||||||||||||||||||
Sbjct: 11896 ttaaaaataaataagtccta 11877
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>emb|AL671925.4| Mouse DNA sequence from clone RP23-236O21 on chromosome 4, complete
             sequence
          Length = 218429

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    ttaactttgattctttaaaa 115
             ||||||||||||||||||||
Sbjct: 37961 ttaactttgattctttaaaa 37980
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>gb|AC161208.9| Mus musculus chromosome 5, clone RP23-71M14, complete sequence
          Length = 211079

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    tctttaaaaataaataagtc 126
              ||||||||||||||||||||
Sbjct: 163896 tctttaaaaataaataagtc 163877


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,181,259
Number of Sequences: 3902068
Number of extensions: 4181259
Number of successful extensions: 107196
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107105
Number of HSP's gapped (non-prelim): 91
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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