Clone Name | rbastl13e10 |
---|---|
Clone Library Name | barley_pub |
>STP2_CANFA (O77645) Nuclear transition protein 2 (TP-2) (TP2)| Length = 129 Score = 36.2 bits (82), Expect = 0.023 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 13/65 (20%) Frame = +2 Query: 35 HPRPRHTSSVKKHSCI*CTCIKH-----RGCSVSRP--------NSSKGHLKTSPWYQPP 175 H +P S + H+C CTC H + CS SR +SS GH SP P Sbjct: 12 HTQPHSNSRPQGHTCSQCTCSSHCQTCSQSCSQSRSSSQSPTGHHSSSGHQSQSP---HP 68 Query: 176 AVPPR 190 +PPR Sbjct: 69 TLPPR 73
>SEST_CAEEL (Q9N4D6) Putative sestrin| Length = 517 Score = 29.6 bits (65), Expect = 2.2 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -2 Query: 196 NRAWRHSRWLVPWRGFKVAFRAIRPRNGAPSVLDACTLDATV 71 NR H W++ W+ V F A R +G P+ C+L V Sbjct: 170 NRMLCHRPWMIHWKNLAVLF-ARRTPDGGPAFFSVCSLHHAV 210
>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)| Length = 114 Score = 29.3 bits (64), Expect = 2.9 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Frame = +2 Query: 35 HPRPRHTSSVKKHSCI*CTCIKH-RGCSVSRPNSSKGHLKTSPWYQPPAVPPRAVFS 202 HP P +S + H+ C C H R CS + SS P + P P + +S Sbjct: 12 HPHPHSSSRPQSHTNNQCACSHHCRSCSQAGHPSSSSSPSPGPPTKHPKTPMHSRYS 68
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 28.5 bits (62), Expect = 4.9 Identities = 17/51 (33%), Positives = 19/51 (37%) Frame = +2 Query: 32 RHPRPRHTSSVKKHSCI*CTCIKHRGCSVSRPNSSKGHLKTSPWYQPPAVP 184 RH PRH H H SV P +GHL S + PP P Sbjct: 69 RHAPPRHAYPPPSHG--------HLPPSVGGPPPHRGHLPPSRGFNPPPSP 111
>STP2_PIG (P29258) Nuclear transition protein 2 (TP-2) (TP2)| Length = 137 Score = 28.5 bits (62), Expect = 4.9 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 13/64 (20%) Frame = +2 Query: 35 HPRPRHTSSVKKHSCI*CTCIKH-----------RGCSVSRPNSSK--GHLKTSPWYQPP 175 H +P S + H+C C+C H + CS SR +S GH ++ P +Q Sbjct: 12 HTQPHSNSGPQSHACNQCSCSHHCQNCSQSCDRSQSCSRSRSSSQSPTGH-RSLPGHQSQ 70 Query: 176 AVPP 187 ++ P Sbjct: 71 SLSP 74
>CR1DA_BACTA (P19415) Pesticidal crystal protein cry1Da (Insecticidal| delta-endotoxin CryID(a)) (Crystaline entomocidal protoxin) (132 kDa crystal protein) Length = 1165 Score = 28.5 bits (62), Expect = 4.9 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +3 Query: 57 VQLKNTVASNVHASSTEGAPFLGRIARKATLKPLHGTNHRLCLHARFFLGKIGTP 221 V+ +NT++ +++ S F + A++ P G +HRLC HA FL +I P Sbjct: 383 VEFQNTISRSIYRKSGPIDSFSELPPQDASVSPAIGYSHRLC-HAT-FLERISGP 435
>ACSL5_HUMAN (Q9ULC5) Long-chain-fatty-acid--CoA ligase 5 (EC 6.2.1.3)| (Long-chain acyl-CoA synthetase 5) (LACS 5) Length = 683 Score = 28.1 bits (61), Expect = 6.4 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = -3 Query: 222 KGSLSFPEKTARGGTAGGWYH-GEVLRW 142 KG L PEKT + GW H G++ RW Sbjct: 502 KGYLKDPEKTQEALDSDGWLHTGDIGRW 529
>RL3_ANASP (Q8YPH9) 50S ribosomal protein L3| Length = 211 Score = 27.7 bits (60), Expect = 8.3 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +3 Query: 21 FDIIVILVPVTQVQLKNTVASNVHASSTEGAPFL----GRIARKATLKPLHG 164 FD + +PVT VQ+ V + V + T+G + G + KA +PL G Sbjct: 16 FDEAGVAIPVTVVQVGPCVVTQVKSKQTDGYAAIQVGYGEVKPKALNRPLLG 67 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,831,165 Number of Sequences: 219361 Number of extensions: 630802 Number of successful extensions: 1821 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1782 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1821 length of database: 80,573,946 effective HSP length: 53 effective length of database: 68,947,813 effective search space used: 1654747512 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)