ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STP2_CANFA (O77645) Nuclear transition protein 2 (TP-2) (TP2) 36 0.023
2SEST_CAEEL (Q9N4D6) Putative sestrin 30 2.2
3STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2) 29 2.9
4EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline... 28 4.9
5STP2_PIG (P29258) Nuclear transition protein 2 (TP-2) (TP2) 28 4.9
6CR1DA_BACTA (P19415) Pesticidal crystal protein cry1Da (Insectic... 28 4.9
7ACSL5_HUMAN (Q9ULC5) Long-chain-fatty-acid--CoA ligase 5 (EC 6.2... 28 6.4
8RL3_ANASP (Q8YPH9) 50S ribosomal protein L3 28 8.3

>STP2_CANFA (O77645) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 129

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
 Frame = +2

Query: 35  HPRPRHTSSVKKHSCI*CTCIKH-----RGCSVSRP--------NSSKGHLKTSPWYQPP 175
           H +P   S  + H+C  CTC  H     + CS SR         +SS GH   SP    P
Sbjct: 12  HTQPHSNSRPQGHTCSQCTCSSHCQTCSQSCSQSRSSSQSPTGHHSSSGHQSQSP---HP 68

Query: 176 AVPPR 190
            +PPR
Sbjct: 69  TLPPR 73



to top

>SEST_CAEEL (Q9N4D6) Putative sestrin|
          Length = 517

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 196 NRAWRHSRWLVPWRGFKVAFRAIRPRNGAPSVLDACTLDATV 71
           NR   H  W++ W+   V F A R  +G P+    C+L   V
Sbjct: 170 NRMLCHRPWMIHWKNLAVLF-ARRTPDGGPAFFSVCSLHHAV 210



to top

>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 114

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 35  HPRPRHTSSVKKHSCI*CTCIKH-RGCSVSRPNSSKGHLKTSPWYQPPAVPPRAVFS 202
           HP P  +S  + H+   C C  H R CS +   SS       P  + P  P  + +S
Sbjct: 12  HPHPHSSSRPQSHTNNQCACSHHCRSCSQAGHPSSSSSPSPGPPTKHPKTPMHSRYS 68



to top

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = +2

Query: 32  RHPRPRHTSSVKKHSCI*CTCIKHRGCSVSRPNSSKGHLKTSPWYQPPAVP 184
           RH  PRH      H         H   SV  P   +GHL  S  + PP  P
Sbjct: 69  RHAPPRHAYPPPSHG--------HLPPSVGGPPPHRGHLPPSRGFNPPPSP 111



to top

>STP2_PIG (P29258) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 137

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
 Frame = +2

Query: 35  HPRPRHTSSVKKHSCI*CTCIKH-----------RGCSVSRPNSSK--GHLKTSPWYQPP 175
           H +P   S  + H+C  C+C  H           + CS SR +S    GH ++ P +Q  
Sbjct: 12  HTQPHSNSGPQSHACNQCSCSHHCQNCSQSCDRSQSCSRSRSSSQSPTGH-RSLPGHQSQ 70

Query: 176 AVPP 187
           ++ P
Sbjct: 71  SLSP 74



to top

>CR1DA_BACTA (P19415) Pesticidal crystal protein cry1Da (Insecticidal|
           delta-endotoxin CryID(a)) (Crystaline entomocidal
           protoxin) (132 kDa crystal protein)
          Length = 1165

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +3

Query: 57  VQLKNTVASNVHASSTEGAPFLGRIARKATLKPLHGTNHRLCLHARFFLGKIGTP 221
           V+ +NT++ +++  S     F     + A++ P  G +HRLC HA  FL +I  P
Sbjct: 383 VEFQNTISRSIYRKSGPIDSFSELPPQDASVSPAIGYSHRLC-HAT-FLERISGP 435



to top

>ACSL5_HUMAN (Q9ULC5) Long-chain-fatty-acid--CoA ligase 5 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 5) (LACS 5)
          Length = 683

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 222 KGSLSFPEKTARGGTAGGWYH-GEVLRW 142
           KG L  PEKT     + GW H G++ RW
Sbjct: 502 KGYLKDPEKTQEALDSDGWLHTGDIGRW 529



to top

>RL3_ANASP (Q8YPH9) 50S ribosomal protein L3|
          Length = 211

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +3

Query: 21  FDIIVILVPVTQVQLKNTVASNVHASSTEGAPFL----GRIARKATLKPLHG 164
           FD   + +PVT VQ+   V + V +  T+G   +    G +  KA  +PL G
Sbjct: 16  FDEAGVAIPVTVVQVGPCVVTQVKSKQTDGYAAIQVGYGEVKPKALNRPLLG 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,831,165
Number of Sequences: 219361
Number of extensions: 630802
Number of successful extensions: 1821
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1821
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top