ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_391884.2| PREDICTED: Apis mellifera similar to ABC membra... 44 0.19
2gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI ... 42 0.76
3emb|BX276111.12| Zebrafish DNA sequence from clone CH211-258H7 i... 42 0.76
4gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell... 42 0.76
5gb|AY094669.1| Drosophila melanogaster GH03394 full insert cDNA 42 0.76
6ref|NM_132420.2| Drosophila melanogaster CG32676-RA (CG32676), mRNA 42 0.76
7gb|AC155649.4| Mus musculus 6 BAC RP24-234M19 (Roswell Park Canc... 42 0.76
8gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 ... 42 0.76
9ref|XM_958413.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.0
10ref|XM_327019.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.0
11emb|CR693207.2|CNS0FXTV Tetraodon nigroviridis full-length cDNA 40 3.0
12gb|BT010090.1| Drosophila melanogaster LD02352 full insert cDNA 40 3.0
13emb|BX284751.1|NCB24N11 Neurospora crassa DNA linkage group II B... 40 3.0
14ref|NM_169632.1| Drosophila melanogaster Centrosomal protein 190... 40 3.0
15ref|NM_079635.2| Drosophila melanogaster Centrosomal protein 190... 40 3.0
16gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, r... 40 3.0
17gb|AC084462.1|AC084462 Caenorhabditis briggsae cosmid CB034G23, ... 40 3.0
18gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46... 40 3.0
19emb|CT009565.10| M.truncatula DNA sequence from clone MTH2-173F9... 40 3.0
20emb|Z50021.1|DMRNACAZF D.melanogaster mRNA for centrosome-associ... 40 3.0

>ref|XM_391884.2| PREDICTED: Apis mellifera similar to ABC membrane transporter
          (LOC408333), mRNA
          Length = 9516

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 12 aactgaacctttgatatcatcg 33
          ||||||||||||||||||||||
Sbjct: 18 aactgaacctttgatatcatcg 39



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>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila
             melanogaster library) complete sequence
          Length = 166613

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 27    atcatcgtcatcctcgtccccgtca 51
             ||||||||| |||||||||||||||
Sbjct: 52362 atcatcgtcttcctcgtccccgtca 52386



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>emb|BX276111.12| Zebrafish DNA sequence from clone CH211-258H7 in linkage group 13,
              complete sequence
          Length = 195980

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 56     agttcagttaaaaaacacagttgca 80
              ||||||||| |||||||||||||||
Sbjct: 109187 agttcagttcaaaaacacagttgca 109163



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>gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 163710

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 27    atcatcgtcatcctcgtccccgtca 51
             ||||||||| |||||||||||||||
Sbjct: 13666 atcatcgtcttcctcgtccccgtca 13690



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>gb|AY094669.1| Drosophila melanogaster GH03394 full insert cDNA
          Length = 5431

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 27   atcatcgtcatcctcgtccccgtca 51
            ||||||||| |||||||||||||||
Sbjct: 2703 atcatcgtcttcctcgtccccgtca 2727



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>ref|NM_132420.2| Drosophila melanogaster CG32676-RA (CG32676), mRNA
          Length = 5406

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 27   atcatcgtcatcctcgtccccgtca 51
            ||||||||| |||||||||||||||
Sbjct: 2703 atcatcgtcttcctcgtccccgtca 2727



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>gb|AC155649.4| Mus musculus 6 BAC RP24-234M19 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 152831

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   aaagatagggaccccttctaa 226
             |||||||||||||||||||||
Sbjct: 63095 aaagatagggaccccttctaa 63115



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>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete
              sequence
          Length = 285729

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 27     atcatcgtcatcctcgtccccgtca 51
              ||||||||| |||||||||||||||
Sbjct: 229080 atcatcgtcttcctcgtccccgtca 229056



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>ref|XM_958413.1| Neurospora crassa OR74A hypothetical protein (NCU06734.1) partial
           mRNA
          Length = 2682

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 27  atcatcgtcatcctcgtccccgtc 50
           ||||||||||||||||||| ||||
Sbjct: 912 atcatcgtcatcctcgtcctcgtc 889



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>ref|XM_327019.1| Neurospora crassa OR74A hypothetical protein (NCU06734.1) partial
           mRNA
          Length = 2682

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 27  atcatcgtcatcctcgtccccgtc 50
           ||||||||||||||||||| ||||
Sbjct: 912 atcatcgtcatcctcgtcctcgtc 889



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>emb|CR693207.2|CNS0FXTV Tetraodon nigroviridis full-length cDNA
          Length = 1336

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 3   acccaacagaactgaacctttgat 26
           ||||||||||||||||| ||||||
Sbjct: 453 acccaacagaactgaacatttgat 476



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>gb|BT010090.1| Drosophila melanogaster LD02352 full insert cDNA
          Length = 4119

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   atatcatcgtcatcctcgtccccg 48
            |||||||||||||| |||||||||
Sbjct: 1059 atatcatcgtcatcatcgtccccg 1036



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>emb|BX284751.1|NCB24N11 Neurospora crassa DNA linkage group II BAC contig B24N11
          Length = 129306

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 27     atcatcgtcatcctcgtccccgtc 50
              ||||||||||||||||||| ||||
Sbjct: 113962 atcatcgtcatcctcgtcctcgtc 113939



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>ref|NM_169632.1| Drosophila melanogaster Centrosomal protein 190kD CG6384-RB,
            transcript variant B (Cp190), mRNA
          Length = 4184

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   atatcatcgtcatcctcgtccccg 48
            |||||||||||||| |||||||||
Sbjct: 1134 atatcatcgtcatcatcgtccccg 1111



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>ref|NM_079635.2| Drosophila melanogaster Centrosomal protein 190kD CG6384-RA,
            transcript variant A (Cp190), mRNA
          Length = 4086

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   atatcatcgtcatcctcgtccccg 48
            |||||||||||||| |||||||||
Sbjct: 1036 atatcatcgtcatcatcgtccccg 1013



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>gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, region 88E-88F, BAC clone
             BACR13A02, complete sequence
          Length = 166141

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    atatcatcgtcatcctcgtccccg 48
             |||||||||||||| |||||||||
Sbjct: 32656 atatcatcgtcatcatcgtccccg 32679



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>gb|AC084462.1|AC084462 Caenorhabditis briggsae cosmid CB034G23, complete sequence
          Length = 72268

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   ggttttttctgggaaagata 212
             ||||||||||||||||||||
Sbjct: 44476 ggttttttctgggaaagata 44457



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>gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46 of 118 of the
             complete sequence
          Length = 236375

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    atatcatcgtcatcctcgtccccg 48
             |||||||||||||| |||||||||
Sbjct: 77088 atatcatcgtcatcatcgtccccg 77111



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>emb|CT009565.10| M.truncatula DNA sequence from clone MTH2-173F9 on chromosome 3,
             complete sequence
          Length = 151325

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    gaactgaacctttgatatcatcgt 34
             ||||||||| ||||||||||||||
Sbjct: 53803 gaactgaacttttgatatcatcgt 53780



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>emb|Z50021.1|DMRNACAZF D.melanogaster mRNA for centrosome-associated zinc finger protein
          Length = 4112

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 25   atatcatcgtcatcctcgtccccg 48
            |||||||||||||| |||||||||
Sbjct: 1047 atatcatcgtcatcatcgtccccg 1024


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,760,055
Number of Sequences: 3902068
Number of extensions: 1760055
Number of successful extensions: 34906
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34872
Number of HSP's gapped (non-prelim): 34
length of query: 233
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 211
effective length of database: 17,147,199,772
effective search space: 3618059151892
effective search space used: 3618059151892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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