Clone Name | rbastl13e10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_391884.2| PREDICTED: Apis mellifera similar to ABC membrane transporter (LOC408333), mRNA Length = 9516 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 aactgaacctttgatatcatcg 33 |||||||||||||||||||||| Sbjct: 18 aactgaacctttgatatcatcg 39
>gb|AC125291.3| Drosophila melanogaster X BAC CH221-17A11 (CHORI Sheared BAC Drosophila melanogaster library) complete sequence Length = 166613 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 atcatcgtcatcctcgtccccgtca 51 ||||||||| ||||||||||||||| Sbjct: 52362 atcatcgtcttcctcgtccccgtca 52386
>emb|BX276111.12| Zebrafish DNA sequence from clone CH211-258H7 in linkage group 13, complete sequence Length = 195980 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Minus Query: 56 agttcagttaaaaaacacagttgca 80 ||||||||| ||||||||||||||| Sbjct: 109187 agttcagttcaaaaacacagttgca 109163
>gb|AC023709.4| Drosophila melanogaster X BAC RP98-10I17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 163710 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 atcatcgtcatcctcgtccccgtca 51 ||||||||| ||||||||||||||| Sbjct: 13666 atcatcgtcttcctcgtccccgtca 13690
>gb|AY094669.1| Drosophila melanogaster GH03394 full insert cDNA Length = 5431 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 atcatcgtcatcctcgtccccgtca 51 ||||||||| ||||||||||||||| Sbjct: 2703 atcatcgtcttcctcgtccccgtca 2727
>ref|NM_132420.2| Drosophila melanogaster CG32676-RA (CG32676), mRNA Length = 5406 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Plus Query: 27 atcatcgtcatcctcgtccccgtca 51 ||||||||| ||||||||||||||| Sbjct: 2703 atcatcgtcttcctcgtccccgtca 2727
>gb|AC155649.4| Mus musculus 6 BAC RP24-234M19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 152831 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 aaagatagggaccccttctaa 226 ||||||||||||||||||||| Sbjct: 63095 aaagatagggaccccttctaa 63115
>gb|AE003451.5| Drosophila melanogaster chromosome X, section 35 of 74 of the complete sequence Length = 285729 Score = 42.1 bits (21), Expect = 0.76 Identities = 24/25 (96%) Strand = Plus / Minus Query: 27 atcatcgtcatcctcgtccccgtca 51 ||||||||| ||||||||||||||| Sbjct: 229080 atcatcgtcttcctcgtccccgtca 229056
>ref|XM_958413.1| Neurospora crassa OR74A hypothetical protein (NCU06734.1) partial mRNA Length = 2682 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 atcatcgtcatcctcgtccccgtc 50 ||||||||||||||||||| |||| Sbjct: 912 atcatcgtcatcctcgtcctcgtc 889
>ref|XM_327019.1| Neurospora crassa OR74A hypothetical protein (NCU06734.1) partial mRNA Length = 2682 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 atcatcgtcatcctcgtccccgtc 50 ||||||||||||||||||| |||| Sbjct: 912 atcatcgtcatcctcgtcctcgtc 889
>emb|CR693207.2|CNS0FXTV Tetraodon nigroviridis full-length cDNA Length = 1336 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 acccaacagaactgaacctttgat 26 ||||||||||||||||| |||||| Sbjct: 453 acccaacagaactgaacatttgat 476
>gb|BT010090.1| Drosophila melanogaster LD02352 full insert cDNA Length = 4119 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 atatcatcgtcatcctcgtccccg 48 |||||||||||||| ||||||||| Sbjct: 1059 atatcatcgtcatcatcgtccccg 1036
>emb|BX284751.1|NCB24N11 Neurospora crassa DNA linkage group II BAC contig B24N11 Length = 129306 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 atcatcgtcatcctcgtccccgtc 50 ||||||||||||||||||| |||| Sbjct: 113962 atcatcgtcatcctcgtcctcgtc 113939
>ref|NM_169632.1| Drosophila melanogaster Centrosomal protein 190kD CG6384-RB, transcript variant B (Cp190), mRNA Length = 4184 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 atatcatcgtcatcctcgtccccg 48 |||||||||||||| ||||||||| Sbjct: 1134 atatcatcgtcatcatcgtccccg 1111
>ref|NM_079635.2| Drosophila melanogaster Centrosomal protein 190kD CG6384-RA, transcript variant A (Cp190), mRNA Length = 4086 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 atatcatcgtcatcctcgtccccg 48 |||||||||||||| ||||||||| Sbjct: 1036 atatcatcgtcatcatcgtccccg 1013
>gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, region 88E-88F, BAC clone BACR13A02, complete sequence Length = 166141 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 atatcatcgtcatcctcgtccccg 48 |||||||||||||| ||||||||| Sbjct: 32656 atatcatcgtcatcatcgtccccg 32679
>gb|AC084462.1|AC084462 Caenorhabditis briggsae cosmid CB034G23, complete sequence Length = 72268 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ggttttttctgggaaagata 212 |||||||||||||||||||| Sbjct: 44476 ggttttttctgggaaagata 44457
>gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46 of 118 of the complete sequence Length = 236375 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 atatcatcgtcatcctcgtccccg 48 |||||||||||||| ||||||||| Sbjct: 77088 atatcatcgtcatcatcgtccccg 77111
>emb|CT009565.10| M.truncatula DNA sequence from clone MTH2-173F9 on chromosome 3, complete sequence Length = 151325 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 gaactgaacctttgatatcatcgt 34 ||||||||| |||||||||||||| Sbjct: 53803 gaactgaacttttgatatcatcgt 53780
>emb|Z50021.1|DMRNACAZF D.melanogaster mRNA for centrosome-associated zinc finger protein Length = 4112 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 atatcatcgtcatcctcgtccccg 48 |||||||||||||| ||||||||| Sbjct: 1047 atatcatcgtcatcatcgtccccg 1024 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,760,055 Number of Sequences: 3902068 Number of extensions: 1760055 Number of successful extensions: 34906 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34872 Number of HSP's gapped (non-prelim): 34 length of query: 233 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 211 effective length of database: 17,147,199,772 effective search space: 3618059151892 effective search space used: 3618059151892 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)