ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl13e09 |
|---|---|
| Clone Library Name | barley_pub |
>NEU2_PIG (P01183) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)| [Contains: Lys-vasopressin; Neurophysin 2 (Neurophysin-I/-III); Copeptin] Length = 166 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = -1 Query: 256 RCCKQKLCCG-----YVQYI*ADKMKQQEEKTIPVLRLSGTVDCGLTGR--AKCVTMRRV 98 RC +CCG +V A+ ++ QEE +P SG CG GR A + Sbjct: 51 RCFGPSICCGDELGCFVGT--AEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCNDE 108 Query: 97 SCITD 83 SC+T+ Sbjct: 109 SCVTE 113
>NEU2_LOXAF (P81768) Neurophysin 2 (Neurophysin-II) (E-NP)| Length = 92 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = -1 Query: 256 RCCKQKLCCG-----YVQYI*ADKMKQQEEKTIPVLRLSGTVDCGLTGR--AKCVTMRRV 98 RC +CCG +V A+ ++ QEE +P SG CG GR A + Sbjct: 20 RCFGPSICCGEELGCFVGT--AEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCYEE 77 Query: 97 SCITD 83 SC+T+ Sbjct: 78 SCVTE 82
>NEU2_HORSE (P01182) Neurophysin 2 (Fragment)| Length = 92 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = -1 Query: 256 RCCKQKLCCG-----YVQYI*ADKMKQQEEKTIPVLRLSGTVDCGLTGR--AKCVTMRRV 98 RC +CCG +V A+ ++ QEE +P SG CG GR A + Sbjct: 17 RCFGPSICCGDELGCFVGT--AEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCNDE 74 Query: 97 SCITD 83 SC+T+ Sbjct: 75 SCVTE 79
>NEU2_BOVIN (P01180) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)| [Contains: Arg-vasopressin; Neurophysin 2 (Neurophysin-II); Copeptin] Length = 166 Score = 28.5 bits (62), Expect = 4.4 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = -1 Query: 256 RCCKQKLCCG-----YVQYI*ADKMKQQEEKTIPVLRLSGTVDCGLTGR--AKCVTMRRV 98 RC +CCG +V A+ ++ QEE +P SG CG GR A + Sbjct: 51 RCFGPSICCGDELGCFVGT--AEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCNDE 108 Query: 97 SCITD 83 SC+T+ Sbjct: 109 SCVTE 113
>SYG_STRCO (Q9L2H9) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 460 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = -2 Query: 300 ILSPYLGPSLDSIHPAVASKSSAAGMYSTYRLIR*NSRRRKQY 172 +LS +LGP+ DS A +A G+++ + ++ SRR+ + Sbjct: 142 LLSTHLGPTQDSGSVAYLRPETAQGIFTNFAQVQTTSRRKPPF 184
>SYG_STRAW (Q82BR9) Glycyl-tRNA synthetase (EC 6.1.1.14) (Glycine--tRNA| ligase) (GlyRS) Length = 460 Score = 28.5 bits (62), Expect = 4.4 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = -2 Query: 300 ILSPYLGPSLDSIHPAVASKSSAAGMYSTYRLIR*NSRRRKQY 172 +LS +LGP+ DS A +A G+++ + ++ SRR+ + Sbjct: 142 LLSTHLGPTQDSGSVAYLRPETAQGIFTNFAQVQQTSRRKPPF 184
>NEU2_HUMAN (P01185) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)| [Contains: Arg-vasopressin; Neurophysin 2 (Neurophysin-II); Copeptin] Length = 164 Score = 27.3 bits (59), Expect = 9.7 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Frame = -1 Query: 283 GSQSR*HSPR-CCKQKLCCGYVQYI*ADKMKQQEEKTIPVLRLSGTVDCGLTGRAKC--V 113 G + R P CC +L C A+ ++ QEE +P SG CG GR V Sbjct: 47 GGKGRCFGPSICCADELGCFVGT---AEALRCQEENYLPSPCQSGQKACGSGGRCAAFGV 103 Query: 112 TMRRVSCITD 83 SC+T+ Sbjct: 104 CCNDESCVTE 113
>NEU2_SHEEP (P01181) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)| [Contains: Arg-vasopressin; Neurophysin 2 (Neurophysin-III); Copeptin] (Fragment) Length = 147 Score = 27.3 bits (59), Expect = 9.7 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Frame = -1 Query: 256 RCCKQKLCCG-----YVQYI*ADKMKQQEEKTIPVLRLSGTVDCGLTGR--AKCVTMRRV 98 RC +CCG +V A+ ++ QEE +P SG CG GR A + Sbjct: 32 RCFGPSICCGDELGCFVGT--AEALRCQEEIYLPSPCQSGQKPCGSGGRCAAAGICCNDE 89 Query: 97 SCITD 83 SC+T+ Sbjct: 90 SCVTE 94
>NEU2_BALPH (P01184) Vasopressin-neurophysin 2 precursor [Contains:| Arg-vasopressin; Neurophysin 2] (Fragment) Length = 107 Score = 27.3 bits (59), Expect = 9.7 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%) Frame = -1 Query: 256 RCCKQKLCCGYVQYI*---ADKMKQQEEKTIPVLRLSGTVDCGLTGR--AKCVTMRRVSC 92 RC +CCG A+ ++ QEE +P SG CG GR A + SC Sbjct: 32 RCFGPSICCGDELGCFMGTAEALRCQEENYLPSPCQSGQKPCGSGGRCAAAGICCNDESC 91 Query: 91 ITD 83 +T+ Sbjct: 92 VTE 94
>CHEB_CLOAB (Q97GZ3) Chemotaxis response regulator protein-glutamate| methylesterase (EC 3.1.1.61) Length = 345 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +1 Query: 16 VTFISVWQKGIKHTMHCSRLPAY 84 + F S+ QKG+K+TM C L A+ Sbjct: 81 IVFSSISQKGMKYTMECLYLGAF 103
>SP1_MOUSE (O89090) Transcription factor Sp1| Length = 784 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = -3 Query: 200 DETAGGENNTSFTFKWNCGLWTDRESEMCNY 108 DETAGGE S + G T RE+ C Y Sbjct: 579 DETAGGEGENSSDLQPQAGRRTRREACTCPY 609
>ARGD_YEAST (P18544) Acetylornithine aminotransferase, mitochondrial precursor| (EC 2.6.1.11) (ACOAT) Length = 423 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/52 (28%), Positives = 21/52 (40%) Frame = +1 Query: 112 LHISLSLSVHNPQFHLNVKLVLFSPPAVSSYQPICTVHTRSRAFACNSGVNA 267 LH + VH+ + + + S V + H SR F CNSG A Sbjct: 76 LHHQANKLVHSSNLYFTKECLDLSEKIVEKTKQFGGQHDASRVFLCNSGTEA 127
>CHFR_MOUSE (Q810L3) Ubiquitin-protein ligase CHFR (EC 6.3.2.-) (Checkpoint| with forkhead and RING finger domains protein) Length = 664 Score = 27.3 bits (59), Expect = 9.7 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -3 Query: 68 EQCIVCLIPFCH 33 +QC VCL PFCH Sbjct: 508 QQCAVCLQPFCH 519
>CHFR_HUMAN (Q96EP1) Ubiquitin-protein ligase CHFR (EC 6.3.2.-) (Checkpoint| with forkhead and RING finger domains protein) Length = 664 Score = 27.3 bits (59), Expect = 9.7 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -3 Query: 68 EQCIVCLIPFCH 33 +QC VCL PFCH Sbjct: 508 QQCAVCLQPFCH 519
>Y2806_XANCP (Q8P708) UPF0042 protein XCC2806| Length = 282 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +3 Query: 57 NALFQIASLSVMQLTRRIVTHFAL 128 +A+ ++L+V QL RR+VT FAL Sbjct: 132 DAIIDTSALNVHQLRRRVVTEFAL 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,085,406 Number of Sequences: 219361 Number of extensions: 885977 Number of successful extensions: 2322 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2293 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2322 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
