ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3 29 2.6
2TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 29 3.4
3LGT_MANSM (Q65VJ7) Prolipoprotein diacylglyceryl transferase (EC... 28 4.4
4ATKA_SALTI (Q8Z8E4) Potassium-transporting ATPase A chain (EC 3.... 28 5.8
5ATKA_SALPA (Q5PCJ8) Potassium-transporting ATPase A chain (EC 3.... 28 5.8
6SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precur... 28 5.8
7NAD2_CAEEL (P32739) Sodium-dependent high-affinity dicarboxylate... 28 7.6
8CNGC4_ARATH (Q94AS9) Cyclic nucleotide-gated ion channel 4 (AtCN... 28 7.6
9YKG6_CAEEL (P46556) Hypothetical protein B0285.6 in chromosome III 27 9.9
10AFAD_HUMAN (P55196) Afadin (AF-6 protein) 27 9.9
11TBP_BOMMO (O45211) TATA-box-binding protein (TATA-box factor) (T... 27 9.9
12PCYOX_PONPY (Q5R748) Prenylcysteine oxidase precursor (EC 1.8.3.5) 27 9.9
13PCYOX_MACFA (Q95KC9) Prenylcysteine oxidase precursor (EC 1.8.3.5) 27 9.9
14PCYOX_HUMAN (Q9UHG3) Prenylcysteine oxidase precursor (EC 1.8.3.... 27 9.9

>CCNB3_MOUSE (Q810T2) G2/mitotic-specific cyclin-B3|
          Length = 1396

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 120  FLHNL*QCTVVLEYSVGYNISCQHCRSRKLN 28
            ++ NL  C   LEY  GY ++  H   RKLN
Sbjct: 1319 YMRNLSNCVPTLEYFTGYKMAELHILVRKLN 1349



to top

>TILS_BUCBP (Q89AX3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 438

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 8   ISQNNLRFSFRLLQC*HDIL*PTEYSKTTVHCYKLCKN 121
           + +NNL F+FR +   H +   +E  K + HC K+C N
Sbjct: 34  LKKNNLNFTFRAIHINHQLHPDSE--KWSDHCKKICIN 69



to top

>LGT_MANSM (Q65VJ7) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 268

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
 Frame = -2

Query: 251 WILVSRRRRPNSCWSLGMNKAFFFSSSV--------------KWDVFVSPPMLLF 129
           W+ V R  RP+S W++       F+                 +WD+FV  P  LF
Sbjct: 39  WLAVKRANRPDSGWTVEQVDNLLFNGFAGVFLGGRIGYVLFYQWDLFVQEPSYLF 93



to top

>ATKA_SALTI (Q8Z8E4) Potassium-transporting ATPase A chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase A chain) (ATP
           phosphohydrolase [potassium-transporting] A chain)
           (Potassium-binding and translocating subunit A)
          Length = 559

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 251 WILVSRRRRPNSCWSLGMNKAFFFSSSVKWDVF 153
           W+ ++ +R P   W L +N A  F ++  W  +
Sbjct: 86  WLPLNPQRLPGLSWDLALNTAVSFVTNTNWQAY 118



to top

>ATKA_SALPA (Q5PCJ8) Potassium-transporting ATPase A chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase A chain) (ATP
           phosphohydrolase [potassium-transporting] A chain)
           (Potassium-binding and translocating subunit A)
          Length = 559

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 251 WILVSRRRRPNSCWSLGMNKAFFFSSSVKWDVF 153
           W+ ++ +R P   W L +N A  F ++  W  +
Sbjct: 86  WLPLNPQRLPGLSWDLALNTAVSFVTNTNWQAY 118



to top

>SCW11_YEAST (P53189) Probable family 17 glucosidase SCW11 precursor (EC|
           3.2.1.-) (Soluble cell wall protein 11)
          Length = 542

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 206 GSSKS*AAVAERPKSMASSFPPNNNQHSCNLAKIYSS 316
           GSS S AA+   PK++A  + P N+  SC  A   SS
Sbjct: 269 GSSSSSAAITSSPKAIA--YSPYNDDGSCKSADAVSS 303



to top

>NAD2_CAEEL (P32739) Sodium-dependent high-affinity dicarboxylate transporter 2|
           (Na(+)/dicarboxylate cotransporter 2) (NaDC-2) (ceNaDC2)
          Length = 551

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 170 VKWDVFVSPPMLLFLFSSYTI 108
           ++W VF  PPM ++L +SY I
Sbjct: 241 LQWMVFAIPPMFVYLLASYII 261



to top

>CNGC4_ARATH (Q94AS9) Cyclic nucleotide-gated ion channel 4 (AtCNGC4) (Cyclic|
           nucleotide-and calmodulin-regulated ion channel 4)
           (AtHLM1)
          Length = 694

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = -2

Query: 251 WILVSRRRRPNSCWSLGMNKAFFFSSSVKWDVFVSPPMLLFLFSSYTICNNVLWFWSILS 72
           W+++ R   P S W    NK F    +    +FV P  L  L  S T    ++  W  L+
Sbjct: 73  WMMLGRILDPRSKWVREWNKVFLLVCAT--GLFVDPLFLYTLSVSDTCMCLLVDGWLALT 130

Query: 71  VTIYR 57
           VT  R
Sbjct: 131 VTALR 135



to top

>YKG6_CAEEL (P46556) Hypothetical protein B0285.6 in chromosome III|
          Length = 577

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 176 SSVKWDVFVSPPMLLFLFSSYTI 108
           S + W  F  PPM+ ++FSS+ I
Sbjct: 253 SYLSWMAFAIPPMIFYMFSSWFI 275



to top

>AFAD_HUMAN (P55196) Afadin (AF-6 protein)|
          Length = 1816

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +3

Query: 150  HKNIPFDRRRKK----KSLVHSQAPARVRPPSPRDQNP 251
            +  +  +RRR+     + L+  +AP   RPP PRD  P
Sbjct: 1640 YSRLEAERRRQHDEAARRLLEPEAPGLCRPPLPRDYEP 1677



to top

>TBP_BOMMO (O45211) TATA-box-binding protein (TATA-box factor) (TATA-binding|
           factor) (TATA sequence-binding protein) (Transcription
           initiation factor TFIID TBP subunit)
          Length = 307

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 186 KSLVHSQAPARVRPPSPRDQNPWLLPFLQTIINT 287
           + ++   +PA + P +P   +P +LP LQ I++T
Sbjct: 107 QQMLSQASPAPMTPLTPLSADPGILPQLQNIVST 140



to top

>PCYOX_PONPY (Q5R748) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -2

Query: 302 LRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFSSSVK 165
           L+ ++S DY +   KKPW+     + P  C S+ ++   ++ + ++
Sbjct: 419 LKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYLNGIE 461



to top

>PCYOX_MACFA (Q95KC9) Prenylcysteine oxidase precursor (EC 1.8.3.5)|
          Length = 505

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -2

Query: 302 LRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFSSSVK 165
           L+ ++S DY +   KKPW+     + P  C S+ ++   ++ + ++
Sbjct: 419 LKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYLNGIE 461



to top

>PCYOX_HUMAN (Q9UHG3) Prenylcysteine oxidase precursor (EC 1.8.3.5) (PCL1)|
          Length = 505

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -2

Query: 302 LRGYMSVDYCLEERKKPWILVSRRRRPNSCWSLGMNKAFFFSSSVK 165
           L+ ++S DY +   KKPW+     + P  C S+ ++   ++ + ++
Sbjct: 419 LKLFLSYDYAV---KKPWLAYPHYKPPEKCPSIILHDRLYYLNGIE 461


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,255,625
Number of Sequences: 219361
Number of extensions: 865723
Number of successful extensions: 2643
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2643
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top