Clone Name | rbastl13e05 |
---|---|
Clone Library Name | barley_pub |
>emb|AL358532.11| Human DNA sequence from clone RP11-186O14 on chromosome 10 Contains the LIPF gene for gastric lipase, the genes for two novel ab-hydrolase associated lipase region domain containing proteins and a CHC1L (chromosome condensation 1-like RCC1-like G exchanging factor RLG) pseudogene, complete sequence Length = 161826 Score = 40.1 bits (20), Expect = 0.47 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 tgatactttggacaattatataca 26 |||| ||||||||||||||||||| Sbjct: 63619 tgatcctttggacaattatataca 63596
>emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chromosome 11, complete sequence Length = 203000 Score = 40.1 bits (20), Expect = 0.47 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 gatactttggacaattatatacag 27 |||||| ||||||||||||||||| Sbjct: 12625 gatactgtggacaattatatacag 12602
>gb|AC105050.2| Homo sapiens BAC clone RP11-106G23 from 2, complete sequence Length = 104017 Score = 38.2 bits (19), Expect = 1.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 32 tggaaccacaaaattacag 50 ||||||||||||||||||| Sbjct: 87861 tggaaccacaaaattacag 87843
>ref|XM_445542.1| Candida glabrata CBS138, CAGL0D02904g partial mRNA Length = 2664 Score = 36.2 bits (18), Expect = 7.3 Identities = 27/30 (90%) Strand = Plus / Plus Query: 20 atatacagagagtggaaccacaaaattaca 49 |||||| ||||||||||| | ||||||||| Sbjct: 910 atatacggagagtggaacaataaaattaca 939
>gb|AC130817.4| Mus musculus BAC clone RP23-68J13 from 16, complete sequence Length = 193917 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 14 acaattatatacagagag 31 |||||||||||||||||| Sbjct: 1209 acaattatatacagagag 1226
>gb|AC005165.1| Homo sapiens BAC clone CTA-242H14 from 7, complete sequence Length = 155164 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 gaaccacaaaattacagc 51 |||||||||||||||||| Sbjct: 3415 gaaccacaaaattacagc 3432
>gb|AC146016.2| Pan troglodytes BAC clone RP43-131D21 from 7, complete sequence Length = 169393 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 34 gaaccacaaaattacagc 51 |||||||||||||||||| Sbjct: 56074 gaaccacaaaattacagc 56091
>emb|AL158192.15| Human DNA sequence from clone RP11-370F20 on chromosome 13 Contains the 5' end of the UGCGL2 gene for UDP-glucose ceramide glucosyltransferase-like 2 (HUGT2 FLJ10873 FLJ11485), the 5' end of the gene for a novel protein similar to heparan sulfate 6-sulfotransferase and two CpG islands, complete sequence Length = 186131 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 19 tatatacagagagtggaa 36 |||||||||||||||||| Sbjct: 46468 tatatacagagagtggaa 46451
>ref|XM_787479.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3973-PA (LOC587769), mRNA Length = 2124 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 tacagagagtggaaccac 40 |||||||||||||||||| Sbjct: 210 tacagagagtggaaccac 227
>emb|CR380950.1| Candida glabrata strain CBS138 chromosome D complete sequence Length = 651701 Score = 36.2 bits (18), Expect = 7.3 Identities = 27/30 (90%) Strand = Plus / Minus Query: 20 atatacagagagtggaaccacaaaattaca 49 |||||| ||||||||||| | ||||||||| Sbjct: 304706 atatacggagagtggaacaataaaattaca 304677
>emb|BX908803.7| Zebrafish DNA sequence from clone CH211-13C14 in linkage group 3, complete sequence Length = 186802 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 18 ttatatacagagagtgga 35 |||||||||||||||||| Sbjct: 30441 ttatatacagagagtgga 30458
>gb|AC074120.9| Homo sapiens BAC clone RP11-724M22 from 4, complete sequence Length = 150013 Score = 36.2 bits (18), Expect = 7.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 1 cttgatactttggacaattata 22 ||||||||||| |||||||||| Sbjct: 144398 cttgatacttttgacaattata 144377
>gb|AC008677.5| Homo sapiens chromosome 5 clone CTB-47B8, complete sequence Length = 160929 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 19 tatatacagagagtggaa 36 |||||||||||||||||| Sbjct: 6727 tatatacagagagtggaa 6744
>gb|AC016601.7| Homo sapiens chromosome 5 clone CTD-2060O10, complete sequence Length = 145264 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 16 aattatatacagagagtg 33 |||||||||||||||||| Sbjct: 7861 aattatatacagagagtg 7878
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 36.2 bits (18), Expect = 7.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 24 acagagagtggaaccacaaaat 45 ||||| |||||||||||||||| Sbjct: 5916601 acagacagtggaaccacaaaat 5916580
>gb|AC008882.6|AC008882 Homo sapiens chromosome 5 clone CTD-2212L7, complete sequence Length = 124086 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 16 aattatatacagagagtg 33 |||||||||||||||||| Sbjct: 87818 aattatatacagagagtg 87801
>gb|AC034246.4|AC034246 Homo sapiens chromosome 5 clone RP11-160F8, complete sequence Length = 155025 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 16 aattatatacagagagtg 33 |||||||||||||||||| Sbjct: 44701 aattatatacagagagtg 44684
>gb|AC091880.3| Homo sapiens chromosome 5 clone CTD-3203N7, complete sequence Length = 93710 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 19 tatatacagagagtggaa 36 |||||||||||||||||| Sbjct: 70890 tatatacagagagtggaa 70907
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 tggacaattatatacaga 28 |||||||||||||||||| Sbjct: 1081022 tggacaattatatacaga 1081005
>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056C19 Length = 147739 Score = 36.2 bits (18), Expect = 7.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 24 acagagagtggaaccacaaaat 45 ||||| |||||||||||||||| Sbjct: 94822 acagacagtggaaccacaaaat 94801
>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0544H11 Length = 178376 Score = 36.2 bits (18), Expect = 7.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 24 acagagagtggaaccacaaaat 45 ||||| |||||||||||||||| Sbjct: 146403 acagacagtggaaccacaaaat 146382
>emb|CT485603.4| RP43-005L22, complete sequence Length = 204041 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 tggacaattatatacaga 28 |||||||||||||||||| Sbjct: 151960 tggacaattatatacaga 151943
>emb|BX897693.12| Zebrafish DNA sequence from clone CH211-147C1 in linkage group 20, complete sequence Length = 173818 Score = 36.2 bits (18), Expect = 7.3 Identities = 21/22 (95%) Strand = Plus / Minus Query: 23 tacagagagtggaaccacaaaa 44 |||||| ||||||||||||||| Sbjct: 79969 tacagacagtggaaccacaaaa 79948
>emb|BX005210.10| Zebrafish DNA sequence from clone DKEY-222F8 in linkage group 4, complete sequence Length = 207949 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 36 accacaaaattacagcct 53 |||||||||||||||||| Sbjct: 15175 accacaaaattacagcct 15158
>gb|AC115725.9| Mus musculus chromosome 5, clone RP23-21A18, complete sequence Length = 278172 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 9 tttggacaattatataca 26 |||||||||||||||||| Sbjct: 152733 tttggacaattatataca 152716
>gb|AC124514.4| Mus musculus BAC clone RP23-450H18 from 16, complete sequence Length = 182032 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 acaattatatacagagag 31 |||||||||||||||||| Sbjct: 45780 acaattatatacagagag 45763
>emb|AL136059.3|CNS01DVW Human chromosome 5 DNA sequence BAC R-391B7 of library RPCI-11 from chromosome 5 of Homo sapiens (Human), complete sequence Length = 188334 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Plus Query: 19 tatatacagagagtggaa 36 |||||||||||||||||| Sbjct: 135586 tatatacagagagtggaa 135603
>emb|AL160234.3|CNS01RGY Human chromosome 14 DNA sequence BAC R-22F22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 155735 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 2 ttgatactttggacaatt 19 |||||||||||||||||| Sbjct: 125216 ttgatactttggacaatt 125199
>emb|AL606516.3| Human DNA sequence from clone RP11-87M18 on chromosome X, complete sequence Length = 90945 Score = 36.2 bits (18), Expect = 7.3 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 tggacaattatatacaga 28 |||||||||||||||||| Sbjct: 15926 tggacaattatatacaga 15909 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 512,422 Number of Sequences: 3902068 Number of extensions: 512422 Number of successful extensions: 130425 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130289 Number of HSP's gapped (non-prelim): 136 length of query: 53 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 33 effective length of database: 17,155,003,908 effective search space: 566115128964 effective search space used: 566115128964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)