ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL358532.11| Human DNA sequence from clone RP11-186O14 on ch... 40 0.47
2emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chr... 40 0.47
3gb|AC105050.2| Homo sapiens BAC clone RP11-106G23 from 2, comple... 38 1.8
4ref|XM_445542.1| Candida glabrata CBS138, CAGL0D02904g partial mRNA 36 7.3
5gb|AC130817.4| Mus musculus BAC clone RP23-68J13 from 16, comple... 36 7.3
6gb|AC005165.1| Homo sapiens BAC clone CTA-242H14 from 7, complet... 36 7.3
7gb|AC146016.2| Pan troglodytes BAC clone RP43-131D21 from 7, com... 36 7.3
8emb|AL158192.15| Human DNA sequence from clone RP11-370F20 on ch... 36 7.3
9ref|XM_787479.1| PREDICTED: Strongylocentrotus purpuratus simila... 36 7.3
10emb|CR380950.1| Candida glabrata strain CBS138 chromosome D comp... 36 7.3
11emb|BX908803.7| Zebrafish DNA sequence from clone CH211-13C14 in... 36 7.3
12gb|AC074120.9| Homo sapiens BAC clone RP11-724M22 from 4, comple... 36 7.3
13gb|AC008677.5| Homo sapiens chromosome 5 clone CTB-47B8, complet... 36 7.3
14gb|AC016601.7| Homo sapiens chromosome 5 clone CTD-2060O10, comp... 36 7.3
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 36 7.3
16gb|AC008882.6|AC008882 Homo sapiens chromosome 5 clone CTD-2212L... 36 7.3
17gb|AC034246.4|AC034246 Homo sapiens chromosome 5 clone RP11-160F... 36 7.3
18gb|AC091880.3| Homo sapiens chromosome 5 clone CTD-3203N7, compl... 36 7.3
19dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 36 7.3
20dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic D... 36 7.3
21dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic D... 36 7.3
22emb|CT485603.4| RP43-005L22, complete sequence 36 7.3
23emb|BX897693.12| Zebrafish DNA sequence from clone CH211-147C1 i... 36 7.3
24emb|BX005210.10| Zebrafish DNA sequence from clone DKEY-222F8 in... 36 7.3
25gb|AC115725.9| Mus musculus chromosome 5, clone RP23-21A18, comp... 36 7.3
26gb|AC124514.4| Mus musculus BAC clone RP23-450H18 from 16, compl... 36 7.3
27emb|AL136059.3|CNS01DVW Human chromosome 5 DNA sequence BAC R-39... 36 7.3
28emb|AL160234.3|CNS01RGY Human chromosome 14 DNA sequence BAC R-2... 36 7.3
29emb|AL606516.3| Human DNA sequence from clone RP11-87M18 on chro... 36 7.3

>emb|AL358532.11| Human DNA sequence from clone RP11-186O14 on chromosome 10 Contains the
             LIPF gene for gastric lipase, the genes for two novel
             ab-hydrolase associated lipase region domain containing
             proteins and a CHC1L (chromosome condensation 1-like
             RCC1-like G exchanging factor RLG) pseudogene, complete
             sequence
          Length = 161826

 Score = 40.1 bits (20), Expect = 0.47
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 3     tgatactttggacaattatataca 26
             |||| |||||||||||||||||||
Sbjct: 63619 tgatcctttggacaattatataca 63596



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>emb|AL596130.13| Mouse DNA sequence from clone RP23-209O5 on chromosome 11, complete
             sequence
          Length = 203000

 Score = 40.1 bits (20), Expect = 0.47
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     gatactttggacaattatatacag 27
             |||||| |||||||||||||||||
Sbjct: 12625 gatactgtggacaattatatacag 12602



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>gb|AC105050.2| Homo sapiens BAC clone RP11-106G23 from 2, complete sequence
          Length = 104017

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 32    tggaaccacaaaattacag 50
             |||||||||||||||||||
Sbjct: 87861 tggaaccacaaaattacag 87843



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>ref|XM_445542.1| Candida glabrata CBS138, CAGL0D02904g partial mRNA
          Length = 2664

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                         
Query: 20  atatacagagagtggaaccacaaaattaca 49
           |||||| ||||||||||| | |||||||||
Sbjct: 910 atatacggagagtggaacaataaaattaca 939



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>gb|AC130817.4| Mus musculus BAC clone RP23-68J13 from 16, complete sequence
          Length = 193917

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 14   acaattatatacagagag 31
            ||||||||||||||||||
Sbjct: 1209 acaattatatacagagag 1226



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>gb|AC005165.1| Homo sapiens BAC clone CTA-242H14 from 7, complete sequence
          Length = 155164

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 34   gaaccacaaaattacagc 51
            ||||||||||||||||||
Sbjct: 3415 gaaccacaaaattacagc 3432



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>gb|AC146016.2| Pan troglodytes BAC clone RP43-131D21 from 7, complete sequence
          Length = 169393

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 34    gaaccacaaaattacagc 51
             ||||||||||||||||||
Sbjct: 56074 gaaccacaaaattacagc 56091



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>emb|AL158192.15| Human DNA sequence from clone RP11-370F20 on chromosome 13 Contains the
             5' end of the UGCGL2 gene for UDP-glucose ceramide
             glucosyltransferase-like 2 (HUGT2 FLJ10873 FLJ11485), the
             5' end of the gene for a novel protein similar to heparan
             sulfate 6-sulfotransferase and two CpG islands, complete
             sequence
          Length = 186131

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 19    tatatacagagagtggaa 36
             ||||||||||||||||||
Sbjct: 46468 tatatacagagagtggaa 46451



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>ref|XM_787479.1| PREDICTED: Strongylocentrotus purpuratus similar to CG3973-PA
           (LOC587769), mRNA
          Length = 2124

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 23  tacagagagtggaaccac 40
           ||||||||||||||||||
Sbjct: 210 tacagagagtggaaccac 227



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>emb|CR380950.1| Candida glabrata strain CBS138 chromosome D complete sequence
          Length = 651701

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 27/30 (90%)
 Strand = Plus / Minus

                                            
Query: 20     atatacagagagtggaaccacaaaattaca 49
              |||||| ||||||||||| | |||||||||
Sbjct: 304706 atatacggagagtggaacaataaaattaca 304677



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>emb|BX908803.7| Zebrafish DNA sequence from clone CH211-13C14 in linkage group 3,
             complete sequence
          Length = 186802

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 18    ttatatacagagagtgga 35
             ||||||||||||||||||
Sbjct: 30441 ttatatacagagagtgga 30458



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>gb|AC074120.9| Homo sapiens BAC clone RP11-724M22 from 4, complete sequence
          Length = 150013

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 1      cttgatactttggacaattata 22
              ||||||||||| ||||||||||
Sbjct: 144398 cttgatacttttgacaattata 144377



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>gb|AC008677.5| Homo sapiens chromosome 5 clone CTB-47B8, complete sequence
          Length = 160929

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 19   tatatacagagagtggaa 36
            ||||||||||||||||||
Sbjct: 6727 tatatacagagagtggaa 6744



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>gb|AC016601.7| Homo sapiens chromosome 5 clone CTD-2060O10, complete sequence
          Length = 145264

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 16   aattatatacagagagtg 33
            ||||||||||||||||||
Sbjct: 7861 aattatatacagagagtg 7878



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                     
Query: 24      acagagagtggaaccacaaaat 45
               ||||| ||||||||||||||||
Sbjct: 5916601 acagacagtggaaccacaaaat 5916580



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>gb|AC008882.6|AC008882 Homo sapiens chromosome 5 clone CTD-2212L7, complete sequence
          Length = 124086

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    aattatatacagagagtg 33
             ||||||||||||||||||
Sbjct: 87818 aattatatacagagagtg 87801



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>gb|AC034246.4|AC034246 Homo sapiens chromosome 5 clone RP11-160F8, complete sequence
          Length = 155025

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    aattatatacagagagtg 33
             ||||||||||||||||||
Sbjct: 44701 aattatatacagagagtg 44684



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>gb|AC091880.3| Homo sapiens chromosome 5 clone CTD-3203N7, complete sequence
          Length = 93710

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 19    tatatacagagagtggaa 36
             ||||||||||||||||||
Sbjct: 70890 tatatacagagagtggaa 70907



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 11      tggacaattatatacaga 28
               ||||||||||||||||||
Sbjct: 1081022 tggacaattatatacaga 1081005



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>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0056C19
          Length = 147739

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 24    acagagagtggaaccacaaaat 45
             ||||| ||||||||||||||||
Sbjct: 94822 acagacagtggaaccacaaaat 94801



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>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0544H11
          Length = 178376

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 24     acagagagtggaaccacaaaat 45
              ||||| ||||||||||||||||
Sbjct: 146403 acagacagtggaaccacaaaat 146382



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>emb|CT485603.4| RP43-005L22, complete sequence
          Length = 204041

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 11     tggacaattatatacaga 28
              ||||||||||||||||||
Sbjct: 151960 tggacaattatatacaga 151943



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>emb|BX897693.12| Zebrafish DNA sequence from clone CH211-147C1 in linkage group 20,
             complete sequence
          Length = 173818

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 23    tacagagagtggaaccacaaaa 44
             |||||| |||||||||||||||
Sbjct: 79969 tacagacagtggaaccacaaaa 79948



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>emb|BX005210.10| Zebrafish DNA sequence from clone DKEY-222F8 in linkage group 4,
             complete sequence
          Length = 207949

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 36    accacaaaattacagcct 53
             ||||||||||||||||||
Sbjct: 15175 accacaaaattacagcct 15158



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>gb|AC115725.9| Mus musculus chromosome 5, clone RP23-21A18, complete sequence
          Length = 278172

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 9      tttggacaattatataca 26
              ||||||||||||||||||
Sbjct: 152733 tttggacaattatataca 152716



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>gb|AC124514.4| Mus musculus BAC clone RP23-450H18 from 16, complete sequence
          Length = 182032

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 14    acaattatatacagagag 31
             ||||||||||||||||||
Sbjct: 45780 acaattatatacagagag 45763



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>emb|AL136059.3|CNS01DVW Human chromosome 5 DNA sequence BAC R-391B7 of library RPCI-11 from
              chromosome 5 of Homo sapiens (Human), complete sequence
          Length = 188334

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 19     tatatacagagagtggaa 36
              ||||||||||||||||||
Sbjct: 135586 tatatacagagagtggaa 135603



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>emb|AL160234.3|CNS01RGY Human chromosome 14 DNA sequence BAC R-22F22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155735

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 2      ttgatactttggacaatt 19
              ||||||||||||||||||
Sbjct: 125216 ttgatactttggacaatt 125199



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>emb|AL606516.3| Human DNA sequence from clone RP11-87M18 on chromosome X, complete
             sequence
          Length = 90945

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 11    tggacaattatatacaga 28
             ||||||||||||||||||
Sbjct: 15926 tggacaattatatacaga 15909


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 512,422
Number of Sequences: 3902068
Number of extensions: 512422
Number of successful extensions: 130425
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130289
Number of HSP's gapped (non-prelim): 136
length of query: 53
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 33
effective length of database: 17,155,003,908
effective search space: 566115128964
effective search space used: 566115128964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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