ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RT16_MYXXA (P23072) RNA-directed DNA polymerase from retron Mx16... 30 1.6
2SPAT7_HUMAN (Q9P0W8) Spermatogenesis-associated protein 7 (Sperm... 30 2.1
3G3ST2_MOUSE (Q6XQH0) Galactose 3-O-sulfotransferase 2 (EC 2.8.2.... 28 4.6

>RT16_MYXXA (P23072) RNA-directed DNA polymerase from retron Mx162-RT (EC|
           2.7.7.49) (Reverse transcriptase) (Mx162-RT)
          Length = 485

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 137 KKPGYKETSDSSQVSTPPPSLQAGSRPLQSHLLELLPIHQTKCKAHGW 280
           K+ G K T     +++P P L+A  R + S+++E LP+H     AHG+
Sbjct: 188 KRDGSKRT-----ITSPKPELKAAQRWVLSNVVERLPVHGA---AHGF 227



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>SPAT7_HUMAN (Q9P0W8) Spermatogenesis-associated protein 7|
           (Spermatogenesis-associated protein HSD3) (HSD-3.1)
          Length = 599

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +3

Query: 108 LEFSFKLHVPKNLGTKKHLIPPKYQRLLHPCRLEAGRFNHICLSFSPSIKQN 263
           LE  F+ H+ +N    KHL   K + LLH  +++ G     C S   S+KQN
Sbjct: 389 LERLFERHIKQN----KHLEEEKMRHLLHVLKVDLG-----CTSEENSVKQN 431



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>G3ST2_MOUSE (Q6XQH0) Galactose 3-O-sulfotransferase 2 (EC 2.8.2.-) (Gal3ST-2)|
           (Galbeta1-3GalNAc 3'-sulfotransferase 2)
           (Beta-galactose-3-O-sulfotransferase 2)
          Length = 394

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 117 SFKLHVPKNLGTKKHLIPPKYQRLLHPCRLEAGRFNHICLSF 242
           SFKL+V ++  T  HL P   +R+ H C L+   + H   +F
Sbjct: 247 SFKLNV-RSQSTVSHLTPESQERVQHWCALDWQLYQHFNRTF 287


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,099,620
Number of Sequences: 219361
Number of extensions: 868177
Number of successful extensions: 2162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2162
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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