>gb|AC121793.3| Mus musculus BAC clone RP23-407B23 from chromosome 9, complete sequence
          Length = 194815

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 244   ccccatccatcaaacaaaatgtaag 268
             |||||||| ||||||||||||||||
Sbjct: 22506 ccccatccttcaaacaaaatgtaag 22482

>gb|AC163338.5| Mus musculus BAC clone RP24-574A13 from chromosome 13, complete sequence
          Length = 149507

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    ttctccccatccatcaaaca 259
              ||||||||||||||||||||
Sbjct: 115827 ttctccccatccatcaaaca 115846

>gb|AC147143.2| Pan troglodytes BAC clone CH251-267L18 from Y, complete sequence
          Length = 187629

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aaaaaggtgagctggtatca 89
             ||||||||||||||||||||
Sbjct: 73436 aaaaaggtgagctggtatca 73455

>gb|AC006338.6| Homo sapiens BAC clone RP11-539D10 from Y, complete sequence
          Length = 175990

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aaaaaggtgagctggtatca 89
             ||||||||||||||||||||
Sbjct: 58020 aaaaaggtgagctggtatca 58001

>gb|AC147114.2| Pan troglodytes BAC clone CH251-548O14 from Y, complete sequence
          Length = 229006

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     aaaaaggtgagctggtatca 89
              ||||||||||||||||||||
Sbjct: 223188 aaaaaggtgagctggtatca 223207

>gb|AC147515.1| Pan troglodytes BAC clone CH251-558O8 from Y, complete sequence
          Length = 209207

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aaaaaggtgagctggtatca 89
              ||||||||||||||||||||
Sbjct: 130992 aaaaaggtgagctggtatca 130973



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aaaaaggtgagctggtatca 89
             ||||||||||||||||||||
Sbjct: 13465 aaaaaggtgagctggtatca 13484

>ref|XM_538345.2| PREDICTED: Canis familiaris similar to transcription factor 20
            isoform 2, transcript variant 1 (LOC481224), mRNA
          Length = 5880

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   aaaaggtgagctggtatcag 90
            ||||||||||||||||||||
Sbjct: 4224 aaaaggtgagctggtatcag 4243

>ref|XM_852361.1| PREDICTED: Canis familiaris similar to transcription factor 20
            isoform 2, transcript variant 2 (LOC481224), mRNA
          Length = 6027

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   aaaaggtgagctggtatcag 90
            ||||||||||||||||||||
Sbjct: 4224 aaaaggtgagctggtatcag 4243

>emb|Z93379.1|CEF21H7 Caenorhabditis elegans Cosmid F21H7, complete sequence
          Length = 28075

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   aaattgcacgtaccaaaaaa 142
             ||||||||||||||||||||
Sbjct: 16268 aaattgcacgtaccaaaaaa 16249

>gb|AC139191.1| Pan troglodytes BAC clone RP43-32G19 from Y, complete sequence
          Length = 170201

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     aaaaaggtgagctggtatca 89
              ||||||||||||||||||||
Sbjct: 167450 aaaaaggtgagctggtatca 167431



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aaaaaggtgagctggtatca 89
             ||||||||||||||||||||
Sbjct: 34133 aaaaaggtgagctggtatca 34152

>emb|AL157833.14| Human DNA sequence from clone RP11-205K10 on chromosome 10 Contains
             part of the KCNMA1 gene for potassium large conductance
             calcium-activated channel subfamily M alpha member 1,
             complete sequence
          Length = 21344

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   agcttctccccatccatcaa 256
             ||||||||||||||||||||
Sbjct: 14078 agcttctccccatccatcaa 14059

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 70       aaaaaggtgagctggtatca 89
                ||||||||||||||||||||
Sbjct: 11334781 aaaaaggtgagctggtatca 11334762



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 70       aaaaaggtgagctggtatca 89
                ||||||||||||||||||||
Sbjct: 11217254 aaaaaggtgagctggtatca 11217273



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 70      aaaaaggtgagctggtatca 89
               ||||||||||||||||||||
Sbjct: 3436194 aaaaaggtgagctggtatca 3436175



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 70      aaaaaggtgagctggtatca 89
               ||||||||||||||||||||
Sbjct: 3249105 aaaaaggtgagctggtatca 3249124

>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 65      caccgaaaaaggtgagctgg 84
               ||||||||||||||||||||
Sbjct: 2672885 caccgaaaaaggtgagctgg 2672904

>gb|AC006983.4|AC006983 Homo sapiens BAC clone RP11-70G12 from Y, complete sequence
          Length = 180345

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aaaaaggtgagctggtatca 89
             ||||||||||||||||||||
Sbjct: 28124 aaaaaggtgagctggtatca 28105

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 249      tccatcaaacaaaatgtaag 268
                ||||||||||||||||||||
Sbjct: 32717861 tccatcaaacaaaatgtaag 32717842

>gb|AC146477.3| Pan troglodytes BAC clone CH251-514B8 from chromosome y, complete
             sequence
          Length = 170833

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aaaaaggtgagctggtatca 89
             ||||||||||||||||||||
Sbjct: 78354 aaaaaggtgagctggtatca 78373

>gb|AC008153.5|AC008153 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence,
            complete sequence
          Length = 117296

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  catctgcttgagcttctccc 246
            ||||||||||||||||||||
Sbjct: 5924 catctgcttgagcttctccc 5905

>gb|AC073395.6|AC073395 Arabidopsis thaliana chromosome 3 BAC F11B9 genomic sequence, complete
              sequence
          Length = 103517

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    catctgcttgagcttctccc 246
              ||||||||||||||||||||
Sbjct: 100555 catctgcttgagcttctccc 100536

>gb|AC010089.4|AC010089 Homo sapiens BAC clone RP11-290O3 from Y, complete sequence
          Length = 103356

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aaaaaggtgagctggtatca 89
             ||||||||||||||||||||
Sbjct: 34060 aaaaaggtgagctggtatca 34079

>gb|AC053490.2|AC053490 Homo sapiens BAC clone RP11-140H23 from Y, complete sequence
          Length = 103432

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 70   aaaaaggtgagctggtatca 89
            ||||||||||||||||||||
Sbjct: 1153 aaaaaggtgagctggtatca 1172

>gb|AC005520.2|AC005520 Homo sapiens PAC clone RP5-1021I20 from 14q24.3, complete sequence
          Length = 151123

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    cctccatccctgcaggctgg 207
              ||||||||||||||||||||
Sbjct: 128461 cctccatccctgcaggctgg 128480

>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 70      aaaaaggtgagctggtatca 89
               ||||||||||||||||||||
Sbjct: 3088700 aaaaaggtgagctggtatca 3088681



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 70      aaaaaggtgagctggtatca 89
               ||||||||||||||||||||
Sbjct: 2959637 aaaaaggtgagctggtatca 2959656



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 70      aaaaaggtgagctggtatca 89
               ||||||||||||||||||||
Sbjct: 1473024 aaaaaggtgagctggtatca 1473005



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 70      aaaaaggtgagctggtatca 89
               ||||||||||||||||||||
Sbjct: 1325914 aaaaaggtgagctggtatca 1325933

>gb|AC092580.3| Homo sapiens BAC clone RP11-16D24 from 2, complete sequence
          Length = 120492

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 96    agctaagctgcgcttgaattctccttca 123
             ||||||||||| ||||||||| ||||||
Sbjct: 21476 agctaagctgctcttgaattcgccttca 21449

>dbj|AP003265.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0490D09
          Length = 154430

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   tccatcaaacaaaatgtaag 268
             ||||||||||||||||||||
Sbjct: 80656 tccatcaaacaaaatgtaag 80637

>gb|AF164343.1|AF164343 Homo sapiens chromosome Y BAC clone 148I14 from Deleted in Azoospermia
             (DAZ) locus
          Length = 85674

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aaaaaggtgagctggtatca 89
             ||||||||||||||||||||
Sbjct: 58747 aaaaaggtgagctggtatca 58728

>gb|AC000021.1|HSAC000021 Origins of the DAZ gene cluster on the human Y chromosome: an autosomal
             gene was transposed, then repeatedly amplified and pruned,
             complete sequence
          Length = 40328

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    aaaaaggtgagctggtatca 89
             ||||||||||||||||||||
Sbjct: 30256 aaaaaggtgagctggtatca 30237

>gb|AC000022.1|AC000022 Genomic sequence from Human Y, complete sequence
          Length = 43795

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 70   aaaaaggtgagctggtatca 89
            ||||||||||||||||||||
Sbjct: 2371 aaaaaggtgagctggtatca 2352

>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 65      caccgaaaaaggtgagctgg 84
               ||||||||||||||||||||
Sbjct: 1575660 caccgaaaaaggtgagctgg 1575679


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,169,104
Number of Sequences: 3902068
Number of extensions: 3169104
Number of successful extensions: 52605
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52482
Number of HSP's gapped (non-prelim): 123
length of query: 283
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 261
effective length of database: 17,147,199,772
effective search space: 4475419140492
effective search space used: 4475419140492
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)