Clone Information

BLAST Search Result

Clone Name	rbastl13d10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF	100	6e-22
2	SC24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-rel...	61	6e-10
3	SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-li...	49	3e-06
4	SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-rel...	41	8e-04
5	SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100	40	0.001
6	SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-rel...	40	0.002
7	SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-rel...	39	0.003
8	SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-rel...	36	0.019
9	YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II	35	0.033
10	SODC_PHOLE (P00446) Superoxide dismutase [Cu-Zn] precursor (EC 1...	32	0.47
11	YCF1_ADICA (Q85FG7) Hypothetical 199.0 kDa protein ycf1	31	0.80
12	SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat...	30	1.0
13	RARA_FUGRU (Q9W5Z3) Retinoic acid receptor alpha (RAR-alpha)	29	3.0
14	NU5C_ORYSA (P12129) NAD(P)H-quinone oxidoreductase chain 5, chlo...	29	3.0
15	SYGM2_ARATH (Q8L785) Glycyl-tRNA synthetase 2, chloroplast/mitoc...	29	3.0
16	RARB_HUMAN (P10826) Retinoic acid receptor beta (RAR-beta) (RAR-...	28	4.0
17	RARB_COTJA (Q9W6B3) Retinoic acid receptor beta (RAR-beta)	28	4.0
18	RARB_CHICK (P22448) Retinoic acid receptor beta (RAR-beta)	28	4.0
19	RARB_MOUSE (P22605) Retinoic acid receptor beta (RAR-beta)	28	4.0
20	STE20_YEAST (Q03497) Serine/threonine-protein kinase STE20 (EC 2...	28	4.0
21	RARB_NOTVI (P18515) Retinoic acid receptor beta (RAR-beta) (Frag...	28	4.0
22	RARA_MOUSE (P11416) Retinoic acid receptor alpha (RAR-alpha)	28	5.2
23	RARA_HUMAN (P10276) Retinoic acid receptor alpha (RAR-alpha)	28	5.2
24	RARA_CANFA (Q5FBR4) Retinoic acid receptor alpha (RAR-alpha)	28	5.2
25	RARA_CHICK (Q90966) Retinoic acid receptor alpha (RAR-alpha)	28	5.2
26	RARG2_MOUSE (P20787) Retinoic acid receptor gamma-B (RAR-gamma-B)	28	5.2
27	NU2C_MARPO (P06257) NAD(P)H-quinone oxidoreductase chain 2, chlo...	28	5.2
28	RARG1_HUMAN (P13631) Retinoic acid receptor gamma-1 (RAR-gamma-1)	28	5.2
29	Y1076_METJA (Q58476) Hypothetical ATP-binding protein MJ1076	28	5.2
30	RARG2_HUMAN (P22932) Retinoic acid receptor gamma-2 (RAR-gamma-2)	28	5.2
31	RARG1_MOUSE (P18911) Retinoic acid receptor gamma-A (RAR-gamma-A)	28	5.2
32	RARA_XENLA (P51126) Retinoic acid receptor alpha (RAR-alpha)	28	5.2
33	PIFA_ECOLI (P96329) Phage T7 exclusion protein	28	6.8
34	KTNB1_CHICK (Q5ZIU8) Katanin p80 WD40-containing subunit B1 (Kat...	28	6.8
35	DLTA_STAXY (Q9X2N4) D-alanine--poly(phosphoribitol) ligase subun...	28	6.8
36	K0323_MOUSE (Q80U38) Protein KIAA0323	27	8.9
37	BRO1_NEUCR (Q7SAN9) Vacuolar protein-sorting protein bro-1 (BRO ...	27	8.9
38	RS16_LEPIN (Q8F3L1) 30S ribosomal protein S16	27	8.9
39	RS16_LEPIC (P62232) 30S ribosomal protein S16	27	8.9
40	LON_MYCPN (P78025) ATP-dependent protease La (EC 3.4.21.53)	27	8.9
41	DHSL_CAUCR (Q9AB72) Deoxyhypusine synthase-like protein (EC 2.5....	27	8.9

>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF|
          Length = 1097

 Score =  100 bits (250), Expect = 6e-22
 Identities = 47/73 (64%), Positives = 62/73 (84%), Gaps = 1/73 (1%)
 Frame = -3

Query: 396  LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGD-FFRSLLVEDKAPGGLSYVE 220
            L+++DN LS+K N+VVNEIRRQR SYLR++LC+KGDP+G+  F+S +VED+  GG SYV+
Sbjct: 1024 LQKYDNQLSKKFNDVVNEIRRQRSSYLRIKLCKKGDPAGNMLFQSYMVEDRGSGGASYVD 1083

Query: 219  FLVHVHRQIQSKM 181
            FLV VHRQIQ K+
Sbjct: 1084 FLVSVHRQIQHKL 1096

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>SC24C_HUMAN (P53992) Protein transport protein Sec24C (SEC24-related protein C)|
          Length = 1094

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
 Frame = -3

Query: 405  LLALEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKA-PGGLS 229
            L  L   DN LS+KV  +++ +R QR  Y++L + ++ D     F+  LVEDK+  GG S
Sbjct: 1018 LSVLPVLDNPLSKKVRGLIDSLRAQRSRYMKLTVVKQEDKMEMLFKHFLVEDKSLSGGAS 1077

Query: 228  YVEFLVHVHRQIQSKMT 178
            YV+FL H+H++I+  ++
Sbjct: 1078 YVDFLCHMHKEIRQLLS 1094

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>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640|
          Length = 1069

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = -3

Query: 396  LEQFDNALSRKVNEVVNEIRRQRCSYLR 313
            L+Q+DN LS+K N+ VNEIRRQRCSYLR
Sbjct: 1008 LQQYDNQLSKKFNDAVNEIRRQRCSYLR 1035

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>SC24D_HUMAN (O94855) Protein transport protein Sec24D (SEC24-related protein D)|
          Length = 1032

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = -3

Query: 396  LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAP-GGLSYVE 220
            L +  N  S+++  ++  I+++R   ++L + ++ +     FR  LVEDK   GG SYV+
Sbjct: 959  LPEVGNPYSQQLRMIMGIIQQKRPYSMKLTIVKQREQPEMVFRQFLVEDKGLYGGSSYVD 1018

Query: 219  FLVHVHRQI 193
            FL  VH++I
Sbjct: 1019 FLCCVHKEI 1027

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>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
 Frame = -3

Query: 402  LALEQFDNALSRKVNEVVNEIRRQRCSYLRLR-LCRKGDPSGDFFRSL--LVEDKAPGGL 232
            +  ++ +N +S+K+  +V ++R    SY  +  L R+G+   + F  L  L+ED+  G  
Sbjct: 963  VTFQEQENGMSKKLMRLVKKLRESDPSYHPMCFLVRQGEQPREGFLLLRNLIEDQMGGSS 1022

Query: 231  SYVEFLVHVHRQIQ 190
             YV++++ +HRQ+Q
Sbjct: 1023 GYVDWILQLHRQVQ 1036

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>SC24A_HUMAN (O95486) Protein transport protein Sec24A (SEC24-related protein A)|
            (Fragment)
          Length = 1078

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = -3

Query: 396  LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAPGGLSYVEF 217
            L + D   S ++   ++ +R QR  +  L + R   P    F   ++ED+    LSY EF
Sbjct: 1009 LPELDTPESARIIAFISWLREQRPFFPILYVIRDESPMKANFLQNMIEDRTESALSYYEF 1068

Query: 216  LVHVHRQI 193
            L+H+ +Q+
Sbjct: 1069 LLHIQQQV 1076

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>SC24A_MOUSE (Q3U2P1) Protein transport protein Sec24A (SEC24-related protein A)|
          Length = 1090

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = -3

Query: 396  LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAPGGLSYVEF 217
            L + D   S ++   ++ +R QR  +  L + R+       F   LVED+    LSY EF
Sbjct: 1021 LPELDTPESARIAAFISWLREQRPFFPVLYVIREESLMKAAFLQSLVEDRTESALSYYEF 1080

Query: 216  LVHVHRQI 193
            L+H+ +Q+
Sbjct: 1081 LLHIQQQV 1088

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>SC24B_HUMAN (O95487) Protein transport protein Sec24B (SEC24-related protein B)|
          Length = 1268

 Score = 36.2 bits (82), Expect = 0.019
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = -3

Query: 396  LEQFDNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVEDKAPGGLSYVEF 217
            L + D   S +    +  +R  R     L + +   P+   F   L+ED+     SY EF
Sbjct: 1199 LPELDTLSSERARSFITWLRDSRPLSPILHIVKDESPAKAEFFQHLIEDRTEAAFSYYEF 1258

Query: 216  LVHVHRQI 193
            L+HV +QI
Sbjct: 1259 LLHVQQQI 1266

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>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II|
          Length = 891

 Score = 35.4 bits (80), Expect = 0.033
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = -3

Query: 402  LALEQFDNALSRKVNEVVNEIRRQRCSY-LRLRLCRKG--DPSGDFFRSLLVEDKAPGGL 232
            L L   D  LS +V  +++ +R Q  S  L  ++ R+G     G+ F S LVED    G 
Sbjct: 814  LELPTLDTVLSVQVRNLLSSLRMQFPSMALHPQIVRQGLDGSEGEIF-STLVEDNTREGF 872

Query: 231  SYVEFLVHVHRQIQSK 184
             Y++FL  +H  + ++
Sbjct: 873  GYLDFLTKIHESLHTQ 888

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>SODC_PHOLE (P00446) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)|
          Length = 173

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 237 HQVLCPPPTANGRNLQTGRPFGTVSVSSKSISVALFHSRLHSLSWTMH 380
           HQ L    T    +LQTG+P GT+ +S     V +F   L  L+  MH
Sbjct: 18  HQALAQDLTVKMTDLQTGKPVGTIELSQNKYGV-VFTPELADLTPGMH 64

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>YCF1_ADICA (Q85FG7) Hypothetical 199.0 kDa protein ycf1|
          Length = 1691

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +1

Query: 130  GIDNLYQPKYHTNEASGHLALDLPVNMYEEL---HIGKATRCFVLHQQRTEE--ISRRVA 294
            G+ NLYQPK +  +   H  L     +  E+   H+   T CF     +T+E     +VA
Sbjct: 1170 GVSNLYQPKMYEKQTPVHYNLIATKFLSPEIRNNHVNDLTMCFDTETGKTDEEFFDEKVA 1229

Query: 295  LSAQS 309
             S ++
Sbjct: 1230 RSIEN 1234

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>SYNE1_HUMAN (Q8NF91) Nesprin-1 (Nuclear envelope spectrin repeat protein 1)|
            (Synaptic nuclear envelope protein 1) (Syne-1) (Myocyte
            nuclear envelope protein 1) (Myne-1) (Enaptin)
          Length = 8797

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
 Frame = +1

Query: 178  GHLALDLPVNMYEELHI--GKATRCFVLHQQRTEEISRR-VALSAQSQ-SQVRASLS 336
            GHLA    +   E+LH+  GKA  CF L ++ ++ + RR +ALS  ++  Q  ASLS
Sbjct: 1825 GHLAKLGSLGRAEDLHLLQGKAEDCFQLFEEASQVVERRQLALSHLAEFLQSHASLS 1881

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>RARA_FUGRU (Q9W5Z3) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 447

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R+ N ++N++ R RC Y RL+ C
Sbjct: 118 REKNCIINKVTRNRCQYCRLQKC 140

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>NU5C_ORYSA (P12129) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 5)
           (NADH-plastoquinone oxidoreductase chain 5)
          Length = 734

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 62  LSTSTNSFQKEKRSI*SLYTHMRESIISTNQNITPMKLQVILLWICL 202
           L+ S N FQ+   S  + Y  +  +I S +  I  + + + +LWICL
Sbjct: 576 LTPSINFFQESSNSSINSYEFITNAISSVSLAIFGLFIGIYVLWICL 622

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>SYGM2_ARATH (Q8L785) Glycyl-tRNA synthetase 2, chloroplast/mitochondrial|
           precursor (EC 6.1.1.14) (Glycine--tRNA ligase 2) (GlyRS
           2)
          Length = 1067

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 76  KLFSERKTVHLIFVYPHAGIDNLYQP-KYHTNEASGHLALDLPVNMYEEL 222
           +LF E +     +   HA +D L +   Y   EA   LAL LP+  Y++L
Sbjct: 257 ELFLENEKEMSSYYLEHASVDRLQKHFDYFDEEARSLLALGLPIPAYDQL 306

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>RARB_HUMAN (P10826) Retinoic acid receptor beta (RAR-beta) (RAR-epsilon)|
           (HBV-activated protein)
          Length = 455

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N V+N++ R RC Y RL+ C
Sbjct: 126 RDKNCVINKVTRNRCQYCRLQKC 148

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>RARB_COTJA (Q9W6B3) Retinoic acid receptor beta (RAR-beta)|
          Length = 455

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N V+N++ R RC Y RL+ C
Sbjct: 126 RDKNCVINKVTRNRCQYCRLQKC 148

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>RARB_CHICK (P22448) Retinoic acid receptor beta (RAR-beta)|
          Length = 455

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N V+N++ R RC Y RL+ C
Sbjct: 126 RDKNCVINKVTRNRCQYCRLQKC 148

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>RARB_MOUSE (P22605) Retinoic acid receptor beta (RAR-beta)|
          Length = 482

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N V+N++ R RC Y RL+ C
Sbjct: 153 RDKNCVINKVTRNRCQYCRLQKC 175

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>STE20_YEAST (Q03497) Serine/threonine-protein kinase STE20 (EC 2.7.11.1)|
          Length = 939

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 378 ALSRKVNEVVNEIRRQRCSYLRLRL---CRKGDPSGDFFRSLLVEDKAPGGL 232
           +LS+++NE   E R +R   L  +L   C  GDPS  +   + +   A GG+
Sbjct: 583 SLSKELNEKKREERERRKKQLYAKLNEICSDGDPSTKYANLVKIGQGASGGV 634

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>RARB_NOTVI (P18515) Retinoic acid receptor beta (RAR-beta) (Fragment)|
          Length = 158

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N V+N++ R RC Y RL+ C
Sbjct: 72  RDKNCVINKVTRNRCQYCRLQRC 94

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>RARA_MOUSE (P11416) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 462

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 126 RDKNCIINKVTRNRCQYCRLQKC 148

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>RARA_HUMAN (P10276) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 462

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 126 RDKNCIINKVTRNRCQYCRLQKC 148

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>RARA_CANFA (Q5FBR4) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 462

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 126 RDKNCIINKVTRNRCQYCRLQKC 148

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>RARA_CHICK (Q90966) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 460

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 126 RDKNCIINKVTRNRCQYCRLQKC 148

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>RARG2_MOUSE (P20787) Retinoic acid receptor gamma-B (RAR-gamma-B)|
          Length = 447

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 117 RDKNCIINKVTRNRCQYCRLQKC 139

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>NU2C_MARPO (P06257) NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 2)
           (NADH-plastoquinone oxidoreductase chain 2)
          Length = 501

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 107 KWTVFLSEKSLYSYLITLFVLRFSYKDSIVVSF 9
           K T++L   SL S LI++ +L F YK   ++SF
Sbjct: 38  KDTIWLYFISLTSLLISIIILLFQYKTDPIISF 70

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>RARG1_HUMAN (P13631) Retinoic acid receptor gamma-1 (RAR-gamma-1)|
          Length = 454

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 128 RDKNCIINKVTRNRCQYCRLQKC 150

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>Y1076_METJA (Q58476) Hypothetical ATP-binding protein MJ1076|
          Length = 337

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 317 K*EHLCRLISFTTSFTFLDNALSNCS 394
           K EHLC +I  T+   F+DN   N S
Sbjct: 163 KMEHLCHVICLTSDTLFIDNVYRNSS 188

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>RARG2_HUMAN (P22932) Retinoic acid receptor gamma-2 (RAR-gamma-2)|
          Length = 443

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 117 RDKNCIINKVTRNRCQYCRLQKC 139

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>RARG1_MOUSE (P18911) Retinoic acid receptor gamma-A (RAR-gamma-A)|
          Length = 458

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 128 RDKNCIINKVTRNRCQYCRLQKC 150

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>RARA_XENLA (P51126) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 458

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 RKVNEVVNEIRRQRCSYLRLRLC 301
           R  N ++N++ R RC Y RL+ C
Sbjct: 126 RDKNCIINKVTRNRCQYCRLQKC 148

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>PIFA_ECOLI (P96329) Phage T7 exclusion protein|
          Length = 741

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 160 HTNEASGHLALDLPVNMYEELHIGKATRCFVLHQQRTEEISRRVALSAQSQSQVRASLSP 339
           HT+E S   ++  P     E+ I +  R  + H Q  +E +R + L    +  +    SP
Sbjct: 531 HTDEVSTRFSIRNPWFSLREMAINEVVRHLLKHMQDIDE-TRTITL---MEKLIVTGASP 586

Query: 340 YFIHDFI 360
           ++I DF+
Sbjct: 587 FWIADFM 593

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>KTNB1_CHICK (Q5ZIU8) Katanin p80 WD40-containing subunit B1 (Katanin p80|
           subunit B1) (p80 katanin)
          Length = 657

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 228 RKGHQVLCPPPTANGRNLQTGRPFGTVSVSSKSISVAL 341
           RKGH+ +C   T+  +NL T R   + S    S+  A+
Sbjct: 494 RKGHKTVCMVLTSRHKNLDTVRAVWSTSDMKNSVDAAV 531

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>DLTA_STAXY (Q9X2N4) D-alanine--poly(phosphoribitol) ligase subunit 1 (EC|
           6.1.1.13) (D-alanine-activating enzyme) (DAE)
           (D-alanine-D-alanyl carrier protein ligase) (DCL)
          Length = 487

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 118 YPHAGIDNLYQPKYHTNEASGHLALDLPVNMYEELHIGKATRCFVLHQQRTEEI 279
           +P A I N Y P   T   +  L  +  +N Y  L +GKA     L     EE+
Sbjct: 277 FPSAYIYNTYGPTEATVAVTSILITEAVINQYNPLPVGKARPGTQLSLAENEEL 330

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>K0323_MOUSE (Q80U38) Protein KIAA0323|
          Length = 671

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +1

Query: 175 SGHLALDLPVNMYEELHIGKATRCFVLHQQRTEEISRRVALSAQSQSQVRASLSPYFIHD 354
           S HL   LP +    L I   T  FV+ Q R EE+ +R++   Q QS   A  +   + D
Sbjct: 108 SAHLVPLLPGS----LMISGLTEAFVMAQSRVEELVQRLSWDLQLQSCPGAPDNGGVLRD 163

Query: 355 F 357
           F
Sbjct: 164 F 164

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>BRO1_NEUCR (Q7SAN9) Vacuolar protein-sorting protein bro-1 (BRO|
           domain-containing protein 1)
          Length = 1012

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 223 HIGKATRCFVLHQQRTEEISRRVALSAQSQSQVRASLSPYFIHDFIHFP 369
           +I     C   HQ RTEE   +   +A    Q  A +  Y   +F+H P
Sbjct: 117 NISAVLSCHAAHQLRTEEAGLK---TAYHSFQASAGMFTYINENFLHAP 162

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>RS16_LEPIN (Q8F3L1) 30S ribosomal protein S16|
          Length = 88

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 318 LRLRLCRKGDPSGDFFRSLLVEDKAPGGLSYVEFLVHVH-RQIQSKMT*SFIGVIFWL 148
           ++LRL R G      +R +  + ++P    +V+ + H H  QI+ + T +   ++ WL
Sbjct: 2   VKLRLQRTGTKHDPHYRIVAADSRSPRDGKFVDIVGHYHPAQIKEQTTFNKEKILTWL 59

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>RS16_LEPIC (P62232) 30S ribosomal protein S16|
          Length = 88

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 318 LRLRLCRKGDPSGDFFRSLLVEDKAPGGLSYVEFLVHVH-RQIQSKMT*SFIGVIFWL 148
           ++LRL R G      +R +  + ++P    +V+ + H H  QI+ + T +   ++ WL
Sbjct: 2   VKLRLQRTGTKHDPHYRIVAADSRSPRDGKFVDIVGHYHPAQIKEQTTFNKEKILTWL 59

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>LON_MYCPN (P78025) ATP-dependent protease La (EC 3.4.21.53)|
          Length = 795

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = -3

Query: 393 EQFDNALSRKVNEVVNEIRRQRCSYLRLRL 304
           ++ DN ++RKVNE ++  R+QR  YLR +L
Sbjct: 230 DKIDNRITRKVNEQLS--RQQRDFYLREKL 257

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>DHSL_CAUCR (Q9AB72) Deoxyhypusine synthase-like protein (EC 2.5.-.-)|
          Length = 367

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 384 DNALSRKVNEVVNEIRRQRCSYLRLRLCRKGDPSGDFFRSLLVE 253
           DN + R  +  ++E   Q C +  L +C K +P G   R  + E
Sbjct: 143 DNYIDRIYDTYIDEEELQACDHTILEICNKLEPRGYSSREFIWE 186


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,135,283
Number of Sequences: 219361
Number of extensions: 1396258
Number of successful extensions: 3900
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 3844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3898
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result