>gb|AC110102.6| Rattus norvegicus 4 BAC CH230-209C7 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 219273

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 47     gattacattttctgggtattga 68
              ||||||||||||||||||||||
Sbjct: 159657 gattacattttctgggtattga 159636

>gb|AC087102.3| Rattus norvegicus strain Brown Norway clone RP31-331N5, complete
             sequence
          Length = 151673

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 47    gattacattttctgggtattga 68
             ||||||||||||||||||||||
Sbjct: 77271 gattacattttctgggtattga 77292

>gb|AC106716.3| Homo sapiens 3 BAC RP11-202P1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152883

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 310    tttctgtagataattgttttat 331
              ||||||||||||||||||||||
Sbjct: 152165 tttctgtagataattgttttat 152144

>gb|AC117424.6| Homo sapiens 3 BAC RP11-172I10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 136511

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 310   tttctgtagataattgttttat 331
             ||||||||||||||||||||||
Sbjct: 50503 tttctgtagataattgttttat 50524

>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 47     gattacattttctgggtattga 68
              ||||||||||||||||||||||
Sbjct: 283519 gattacattttctgggtattga 283540

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 164      aatggatgctcgtcaatttacaatctgca 192
                |||||| |||||||||||||||| |||||
Sbjct: 12443255 aatggaagctcgtcaatttacaagctgca 12443227

>gb|AC183622.3| Pan troglodytes BAC clone CH251-66G8 from chromosome 15, complete
              sequence
          Length = 206618

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 305    atgattttctgtagataattgttttatat 333
              |||||| | ||||||||||||||||||||
Sbjct: 163021 atgattatatgtagataattgttttatat 162993

>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14,
              complete sequence
          Length = 132560

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 164    aatggatgctcgtcaatttacaatctgca 192
              |||||| |||||||||||||||| |||||
Sbjct: 100937 aatggaagctcgtcaatttacaagctgca 100909

>emb|BX548161.12| Zebrafish DNA sequence from clone DKEY-248F6 in linkage group 16,
             complete sequence
          Length = 188754

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 310   tttctgtagataattgtttta 330
             |||||||||||||||||||||
Sbjct: 65723 tttctgtagataattgtttta 65703

>gb|AC087474.9| Homo sapiens chromosome 15, clone RP11-350A1, complete sequence
          Length = 185221

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 305    atgattttctgtagataattgttttatat 333
              |||||| | ||||||||||||||||||||
Sbjct: 137710 atgattatatgtagataattgttttatat 137682

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 164      aatggatgctcgtcaatttacaatctgca 192
                |||||| |||||||||||||||| |||||
Sbjct: 12440018 aatggaagctcgtcaatttacaagctgca 12439990

>gb|AC009457.8|AC009457 Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
           BACR25A06, complete sequence
          Length = 170163

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 64  attgaagaaagccgcacttgc 84
           |||||||||||||||||||||
Sbjct: 528 attgaagaaagccgcacttgc 548

>gb|AC005721.3|AC005721 Drosophila melanogaster, chromosome 3R, region 88D8-88E1, BAC clone
              BACR48E23, complete sequence
          Length = 203183

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 64     attgaagaaagccgcacttgc 84
              |||||||||||||||||||||
Sbjct: 140736 attgaagaaagccgcacttgc 140756

>dbj|AK068503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153C08, full
            insert sequence
          Length = 3677

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 164  aatggatgctcgtcaatttacaatctgca 192
            |||||| |||||||||||||||| |||||
Sbjct: 3453 aatggaagctcgtcaatttacaagctgca 3425

>gb|AE003707.2| Drosophila melanogaster chromosome 3R, section 45 of 118 of the
            complete sequence
          Length = 228284

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 64   attgaagaaagccgcacttgc 84
            |||||||||||||||||||||
Sbjct: 6369 attgaagaaagccgcacttgc 6389

>emb|BX000364.6| Zebrafish DNA sequence from clone DKEY-11K1 in linkage group 17,
             complete sequence
          Length = 189563

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 308   attttctgtagataattgttt 328
             |||||||||||||||||||||
Sbjct: 74367 attttctgtagataattgttt 74347

>gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, complete sequence
          Length = 214933

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    gtccaaactgcagccacaca 370
              ||||||||||||||||||||
Sbjct: 168021 gtccaaactgcagccacaca 168040

>gb|AC158220.4| Mus musculus chromosome 7, clone RP23-278M8, complete sequence
          Length = 189304

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  cttggtggaggcagccacac 301
            ||||||||||||||||||||
Sbjct: 4717 cttggtggaggcagccacac 4736

>emb|CR388017.7| Zebrafish DNA sequence from clone CH211-283H24 in linkage group 7,
             complete sequence
          Length = 111978

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   aactgcagccacacaaatga 375
             ||||||||||||||||||||
Sbjct: 37071 aactgcagccacacaaatga 37090

>gb|AC122298.3| Mus musculus BAC clone RP23-269A11 from 12, complete sequence
          Length = 151332

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     acattttctgggtattgaag 70
              ||||||||||||||||||||
Sbjct: 145729 acattttctgggtattgaag 145748

>gb|AC115123.4| Mus musculus BAC clone RP24-129O20 from 3, complete sequence
          Length = 181380

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    attttctgtagataattgtt 327
              ||||||||||||||||||||
Sbjct: 181294 attttctgtagataattgtt 181313

>ref|XM_774519.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_81_139637_136254) partial mRNA
          Length = 3384

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 217 ttgtggaagattttctgtagatga 240
           ||||||||||||||||||| ||||
Sbjct: 368 ttgtggaagattttctgtacatga 391

>gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, complete sequence
          Length = 242745

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   gtccaaactgcagccacaca 370
             ||||||||||||||||||||
Sbjct: 14850 gtccaaactgcagccacaca 14869

>gb|AC136712.9| Mus musculus chromosome 3, clone RP23-36H15, complete sequence
          Length = 201139

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 308    attttctgtagataattgtt 327
              ||||||||||||||||||||
Sbjct: 102879 attttctgtagataattgtt 102898

>gb|AC148607.16| Medicago truncatula clone mth2-43g15, complete sequence
          Length = 148291

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    acatgattttctgtagataa 322
              ||||||||||||||||||||
Sbjct: 106237 acatgattttctgtagataa 106256

>emb|AL353807.18| Human DNA sequence from clone RP11-29H23 on chromosome 1 Contains the
             5' end of the ASH1L gene for ash1 (absent, small, or
             homeotic)-like (Drosophila), two novel genes, a pseudogene
             similar to part of death associated protein 3 (DAP3), the
             gene for a novel protein (FLJ10504), the 3' end of a novel
             pseudogene and a CpG island, complete sequence
          Length = 179064

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   ttttctgtagataattgttt 328
             ||||||||||||||||||||
Sbjct: 14233 ttttctgtagataattgttt 14214

>emb|AL136094.13| Human DNA sequence from clone RP3-527B10 on chromosome 6q25.1-25.3
             Contains a high mobility group (nonhistone chromosomal)
             protein 4 (HMG4) pseudogene, complete sequence
          Length = 156667

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    cattttctgggtattgaaga 71
             ||||||||||||||||||||
Sbjct: 70724 cattttctgggtattgaaga 70743

>emb|CR381585.11| Zebrafish DNA sequence from clone DKEY-27P7 in linkage group 20
             Contains the gene for a novel protein similar to mouse and
             human integrin beta 1 binding protein 1 (ITGB1BP1), the
             gene for a novel protein similar to vertebrate development
             and differentiation enhancing factor 2 (DDEF2) and three
             CpG islands, complete sequence
          Length = 209698

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   aactgcagccacacaaatga 375
             ||||||||||||||||||||
Sbjct: 80388 aactgcagccacacaaatga 80369

>gb|AC148986.5| Mus musculus BAC clone RP23-89A16 from chromosome 7, complete sequence
          Length = 243039

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   cttggtggaggcagccacac 301
             ||||||||||||||||||||
Sbjct: 50019 cttggtggaggcagccacac 50000

>gb|AC159625.2| Mus musculus BAC clone RP24-262L7 from chromosome 12, complete sequence
          Length = 189979

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    tggaagattttctgtagatg 239
              ||||||||||||||||||||
Sbjct: 177078 tggaagattttctgtagatg 177097

>gb|AC140285.4| Mus musculus BAC clone RP24-559A5 from chromosome 12, complete sequence
          Length = 170917

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    acattttctgggtattgaag 70
             ||||||||||||||||||||
Sbjct: 37590 acattttctgggtattgaag 37609

>gb|AC102367.35| Mus musculus chromosome 3, clone RP23-211J6, complete sequence
          Length = 185452

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    cacacaacatgattttctgt 316
              ||||||||||||||||||||
Sbjct: 156276 cacacaacatgattttctgt 156257

>dbj|AP001829.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-254C5, complete
             sequence
          Length = 117291

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 315   gtagataattgttttatatcaactatgg 342
             |||| ||||| |||||||||||||||||
Sbjct: 46483 gtaggtaattattttatatcaactatgg 46456

>gb|AC161242.2| Mus musculus BAC clone RP24-200E4 from chromosome 12, complete sequence
          Length = 179665

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   tggaagattttctgtagatg 239
             ||||||||||||||||||||
Sbjct: 95063 tggaagattttctgtagatg 95082

>gb|AC141883.4| Mus musculus BAC clone RP24-128P19 from 7, complete sequence
          Length = 189828

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 282    cttggtggaggcagccacac 301
              ||||||||||||||||||||
Sbjct: 102543 cttggtggaggcagccacac 102524


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,410,185
Number of Sequences: 3902068
Number of extensions: 4410185
Number of successful extensions: 85398
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85283
Number of HSP's gapped (non-prelim): 115
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)