ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PON1_RABIT (P27170) Serum paraoxonase/arylesterase 1 (EC 3.1.1.2... 32 0.39
2OPGH_RHOPA (Q6N5U3) Glucans biosynthesis glucosyltransferase H (... 32 0.39
3PON1_MOUSE (P52430) Serum paraoxonase/arylesterase 1 (EC 3.1.1.2... 30 2.0
4PON1_RAT (P55159) Serum paraoxonase/arylesterase 1 (EC 3.1.1.2) ... 29 2.6
5PON1_HUMAN (P27169) Serum paraoxonase/arylesterase 1 (EC 3.1.1.2... 29 2.6
6LEPA_MYCPU (Q98QW3) GTP-binding protein lepA 28 5.7
7USF1_MOUSE (Q61069) Upstream stimulatory factor 1 (Major late tr... 28 7.4
8USF1_HUMAN (P22415) Upstream stimulatory factor 1 (Major late tr... 28 7.4

>PON1_RABIT (P27170) Serum paraoxonase/arylesterase 1 (EC 3.1.1.2) (EC 3.1.8.1)|
           (PON 1) (Serum aryldialkylphosphatase 1) (A-esterase 1)
           (Aromatic esterase 1)
          Length = 358

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 6   SLNENTLISPEQIYSTSI*YAIDPILKPW 92
           S+N+   + PE  Y+T+  Y IDP LK W
Sbjct: 165 SVNDIVAVGPEHFYATNDHYFIDPYLKSW 193



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>OPGH_RHOPA (Q6N5U3) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)|
          Length = 721

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 24/72 (33%), Positives = 35/72 (48%)
 Frame = +3

Query: 24  LISPEQIYSTSI*YAIDPILKPWYPKNQTTKGTRFERRNKRKEELIIHVVNLAFFSIRNP 203
           +++PEQI   +I   +  +     P NQTT      R ++R  EL  H+  LAF    +P
Sbjct: 601 MMTPEQIDPPAILAQVHALADRLCPANQTTDPLSALRGDRRLREL--HLAALAF----HP 654

Query: 204 PRMNTCMDPSCA 239
           PR    +DP  A
Sbjct: 655 PRRRGRIDPHLA 666



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>PON1_MOUSE (P52430) Serum paraoxonase/arylesterase 1 (EC 3.1.1.2) (EC 3.1.8.1)|
           (PON 1) (Serum aryldialkylphosphatase 1) (A-esterase 1)
           (Aromatic esterase 1)
          Length = 354

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 6   SLNENTLISPEQIYSTSI*YAIDPILKPW 92
           S+N+   I PE  Y+T+  Y  DP L+ W
Sbjct: 165 SINDIAAIGPESFYATNDHYFADPYLRSW 193



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>PON1_RAT (P55159) Serum paraoxonase/arylesterase 1 (EC 3.1.1.2) (EC 3.1.8.1)|
           (PON 1) (Serum aryldialkylphosphatase 1) (A-esterase 1)
           (Aromatic esterase 1)
          Length = 354

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 6   SLNENTLISPEQIYSTSI*YAIDPILKPW 92
           S+N+   + PE  Y+T+  Y  DP L+ W
Sbjct: 165 SINDIAAVGPESFYATNDHYFADPYLRSW 193



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>PON1_HUMAN (P27169) Serum paraoxonase/arylesterase 1 (EC 3.1.1.2) (EC 3.1.8.1)|
           (PON 1) (Serum aryldialkylphosphatase 1) (A-esterase 1)
           (Aromatic esterase 1) (K-45)
          Length = 354

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 6   SLNENTLISPEQIYSTSI*YAIDPILKPW 92
           +LN+   + PE  Y T+  Y +DP L+ W
Sbjct: 165 NLNDIVAVGPEHFYGTNDHYFLDPYLQSW 193



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>LEPA_MYCPU (Q98QW3) GTP-binding protein lepA|
          Length = 597

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 37  NKFTAPPFNMPLIPSLN-LGIPKTKPQRVQGLNEEING 147
           N + A   N+ +IP +N + +P   P+R++G  EE+ G
Sbjct: 112 NAYLALENNLKIIPIINKIDLPSADPERIKGEIEEVIG 149



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>USF1_MOUSE (Q61069) Upstream stimulatory factor 1 (Major late transcription|
           factor 1)
          Length = 310

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 24  LISPEQIYSTSI*YAIDPILKPWYPKNQTTKGTRFERRNKRKEEL 158
           ++SP+++       +I P   P+ PK++  + TR E+R  +  E+
Sbjct: 163 MMSPQEVLQGGSQRSIAPRTHPYSPKSEAPRTTRDEKRRAQHNEV 207



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>USF1_HUMAN (P22415) Upstream stimulatory factor 1 (Major late transcription|
           factor 1)
          Length = 310

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 24  LISPEQIYSTSI*YAIDPILKPWYPKNQTTKGTRFERRNKRKEEL 158
           ++SP+++       +I P   P+ PK++  + TR E+R  +  E+
Sbjct: 163 MMSPQEVLQGGSQRSIAPRTHPYSPKSEAPRTTRDEKRRAQHNEV 207


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,525,718
Number of Sequences: 219361
Number of extensions: 1013868
Number of successful extensions: 2482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2482
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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