ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl13c11 |
|---|---|
| Clone Library Name | barley_pub |
>RIR1_ARATH (Q9SJ20) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase R1 subunit) (AtRNR1) Length = 816 Score = 65.5 bits (158), Expect = 3e-11 Identities = 35/60 (58%), Positives = 40/60 (66%) Frame = -3 Query: 389 RAAADAIKFTVDTGFLKVXXXXXXXXXXXXGKLAEEDDEAKMAQVVCSLNNREECLACGS 210 RAAADAIKFTVDT LK ++ EED+E K+AQ+VCSL N EECLACGS Sbjct: 761 RAAADAIKFTVDTAMLK----EKPSVAEGDKEVEEEDNETKLAQMVCSLTNPEECLACGS 816
>RIR1_DROME (P48591) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) Length = 812 Score = 46.6 bits (109), Expect = 1e-05 Identities = 24/60 (40%), Positives = 34/60 (56%) Frame = -3 Query: 389 RAAADAIKFTVDTGFLKVXXXXXXXXXXXXGKLAEEDDEAKMAQVVCSLNNREECLACGS 210 + AA+AI+FTV+ V + EED E KMA +VCSL N++ C++CGS Sbjct: 753 KPAANAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACMSCGS 812
>RIR1_MOUSE (P07742) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) Length = 792 Score = 41.2 bits (95), Expect = 6e-04 Identities = 25/60 (41%), Positives = 31/60 (51%) Frame = -3 Query: 389 RAAADAIKFTVDTGFLKVXXXXXXXXXXXXGKLAEEDDEAKMAQVVCSLNNREECLACGS 210 R AA+ I+FT++ LK EE+ E A +VCSL NREECL CGS Sbjct: 742 RPAANPIQFTLNKEKLKDKEKALKE---------EEEKERNTAAMVCSLENREECLMCGS 792
>RIR1_HUMAN (P23921) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) Length = 792 Score = 40.4 bits (93), Expect = 0.001 Identities = 24/60 (40%), Positives = 31/60 (51%) Frame = -3 Query: 389 RAAADAIKFTVDTGFLKVXXXXXXXXXXXXGKLAEEDDEAKMAQVVCSLNNREECLACGS 210 R AA+ I+FT++ LK EE+ E A +VCSL NR+ECL CGS Sbjct: 742 RPAANPIQFTLNKEKLK---------DKEKVSKEEEEKERNTAAMVCSLENRDECLMCGS 792
>RIR1_BRARE (P79732) Ribonucleoside-diphosphate reductase large subunit (EC| 1.17.4.1) (Ribonucleoside-diphosphate reductase M1 subunit) (Ribonucleotide reductase large chain) (Ribonucleotide reductase protein R1 class I) Length = 794 Score = 37.4 bits (85), Expect = 0.009 Identities = 22/60 (36%), Positives = 28/60 (46%) Frame = -3 Query: 389 RAAADAIKFTVDTGFLKVXXXXXXXXXXXXGKLAEEDDEAKMAQVVCSLNNREECLACGS 210 + A+ I+FT++ LK EE E A +VCSL NR ECL CGS Sbjct: 742 KPGANPIQFTLNKEKLKETQKTTSSED-------EETKERNKAAMVCSLENRHECLMCGS 794
>RIR1_PLAF4 (P50648) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase R1 subunit) Length = 806 Score = 34.3 bits (77), Expect = 0.074 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = -3 Query: 389 RAAADAIKFTVDTGFLKVXXXXXXXXXXXXGKLAEED---DEAKMAQVVCSL--NNREEC 225 +AA DAIKFTVDT K + + E+ + Q VC L NN E+C Sbjct: 742 QAATDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQC 801 Query: 224 LAC 216 L C Sbjct: 802 LMC 804
>SODM_CANAL (O13401) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 234 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Frame = +2 Query: 41 ATQPSRAAQQGNSSVLKHNRTYINDSLLALFNAN-DQTVWLCNAALVKRKIDATDPSNFR 217 AT+P + Q KH++TY+N+ NA+ +Q V + VK+ + NF Sbjct: 47 ATEPYISGQINEIHYTKHHQTYVNN-----LNASIEQAVEAKSKGEVKKLVALEKAINFN 101 Query: 218 MPGTLPGCSRSRQLAP 265 G L C + LAP Sbjct: 102 GGGYLNHCLWWKNLAP 117
>NU160_HUMAN (Q12769) Nuclear pore complex protein Nup160 (Nucleoporin Nup160)| (160 kDa nucleoporin) Length = 1316 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +2 Query: 185 KIDATDPSNFRMPGTLPGCSRSRQLAPFWL 274 K+D TDP N+++ +PG S + + WL Sbjct: 158 KVDFTDPCNYQLIPAVPGISPNSTASTAWL 187
>RIR1_PLAFG (P50647) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase R1 subunit) Length = 804 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Frame = -3 Query: 389 RAAADAIKFTVDTGFLK-VXXXXXXXXXXXXGKLAEEDDEAKMAQVVC---SLNNREECL 222 +AA DAIKFTVDT K +++ E + C NN E+CL Sbjct: 741 QAATDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETIQLNQRYSKCVSFKSNNDEQCL 800 Query: 221 AC 216 C Sbjct: 801 MC 802
>ARGJ1_ANASP (Q8YVA8) Arginine biosynthesis bifunctional protein argJ 1| [Includes: Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine acetyltransferase) (Ornithine transacetylase) (OATase); Amino-acid acetyltransferase (EC 2.3.1.1) (N-acetylglutamate Length = 413 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = +2 Query: 53 SRAAQQGNSSVLKHNRTYINDSLLALFNANDQTVWLCNAALVKRKIDA 196 +RAA + +S+ T NDSL+AL N +T + K++A Sbjct: 212 TRAADRSFNSITVDGDTSTNDSLIALANGQSRTPAITEVGAESEKLEA 259
>EF2_PYRKO (Q5JFZ3) Elongation factor 2 (EF-2)| Length = 732 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +2 Query: 38 LATQPSRAAQQGNSSVLKHNRTYINDSLLA 127 L TQP R G ++ + H +T ++D+LLA Sbjct: 14 LMTQPERIRNMGIAAHIDHGKTTLSDNLLA 43
>AHM2_ARATH (O64474) Putative cadmium/zinc-transporting ATPase 2 (EC 3.6.3.3)| (EC 3.6.3.5) Length = 1172 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = +3 Query: 201 IRLTSACQALFPVVQGADNLRHFGFIVLL 287 I L SAC A+ PV+ NL+H+ + L+ Sbjct: 323 IILVSACVAIVPVIMKVHNLKHWFHLALV 351
>RAD50_DROME (Q9W252) DNA repair protein RAD50 (EC 3.6.-.-)| Length = 1318 Score = 27.7 bits (60), Expect = 6.9 Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 4/80 (5%) Frame = +1 Query: 34 NIGNSAIKGCPARELISS*TQPHLHKRLSSRIIQCQ*SDRLVV*CCLG*E----KNRCNR 201 NI AIK AR+ S K+L ++ +LV C L + KN+ Sbjct: 501 NIDQQAIKDAIARKKASIAENQIQFKKLDEQLTFLGSMAKLVAECSLKQKELDKKNQEVH 560 Query: 202 SV*LPHARHSSRLFKEQTTC 261 V H+ H +LFKE TC Sbjct: 561 RVRSRHSDHFGKLFKEPITC 580
>HBB_SALSA (Q91473) Hemoglobin beta subunit (Hemoglobin beta chain)| (Beta-globin) Length = 147 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 35 TLATQPSRAAQQGNSSVLKHNRTYINDSLLALFNAND-QTVWLCNAALVKRKIDATDPSN 211 T + AA GN +V KH +T ++ A+ N +D + + + + K+ DP N Sbjct: 44 TFGNLSTPAAIMGNPAVAKHGKTVMHGLDRAVQNLDDIKNAYTALSVMHSEKLH-VDPDN 102 Query: 212 FRM 220 FR+ Sbjct: 103 FRL 105
>HBB_ONCNE (Q98TS0) Hemoglobin beta subunit (Hemoglobin beta chain)| (Beta-globin) Length = 147 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 35 TLATQPSRAAQQGNSSVLKHNRTYINDSLLALFNAND-QTVWLCNAALVKRKIDATDPSN 211 T + AA GN +V KH +T ++ A+ N +D + + + + K+ DP N Sbjct: 44 TFGNLSTPAAIMGNPAVAKHGKTVMHGLDRAVQNLDDIKNTYAALSVMHSEKLH-VDPDN 102 Query: 212 FRM 220 FR+ Sbjct: 103 FRL 105
>HBB4_ONCMY (P02141) Hemoglobin beta-4 subunit (Hemoglobin beta-4 chain)| (Beta-4-globin) (Hemoglobin beta-IV chain) Length = 147 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +2 Query: 35 TLATQPSRAAQQGNSSVLKHNRTYINDSLLALFNAND-QTVWLCNAALVKRKIDATDPSN 211 T + AA GN +V KH +T ++ A+ N +D + + + + K+ DP N Sbjct: 44 TFGNLSTPAAIMGNPAVAKHGKTVMHGLDRAVQNLDDIKNTYTALSVMHSEKLH-VDPDN 102 Query: 212 FRM 220 FR+ Sbjct: 103 FRL 105 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,738,306 Number of Sequences: 219361 Number of extensions: 907369 Number of successful extensions: 1933 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1911 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1931 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
