ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY484588.1| Musa acuminata clone MuG9, genomic sequence 64 4e-07
2ref|XM_550374.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
4dbj|AP002864.2| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
5dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
6dbj|AK068858.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
7gb|AY105931.1| Zea mays PCO081802 mRNA sequence 58 2e-05
8gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 44 0.33
9ref|XM_468281.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.33
10gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare str... 44 0.33
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
12dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
13ref|XM_657547.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 1.3
14gb|AC023480.7| Homo sapiens chromosome 3 clone RP11-399K19 map 3... 42 1.3
15gb|AC016146.18| Homo sapiens 3 BAC RP11-327M20 (Roswell Park Can... 42 1.3
16gb|AC011410.6|AC011410 Homo sapiens chromosome 5 clone CTB-78H18... 42 1.3
17gb|AC018503.6|AC018503 Homo sapiens chromosome 3 clone RP11-41L1... 42 1.3
18gb|AC148833.5| Pan troglodytes BAC clone CH251-55M19 from chromo... 40 5.2
19ref|XM_800388.1| Trypanosoma cruzi strain CL Brener mucin-associ... 40 5.2
20ref|XM_803552.1| Trypanosoma cruzi strain CL Brener mucin-associ... 40 5.2
21ref|XM_816306.1| Trypanosoma cruzi strain CL Brener mucin-associ... 40 5.2
22gb|AC005535.2| Homo sapiens PAC clone RP5-1168M19 from 7, comple... 40 5.2
23gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 5.2
24gb|AC034259.7| Homo sapiens chromosome 11, clone RP11-138N3, com... 40 5.2
25emb|BX547938.9| Zebrafish DNA sequence from clone DKEY-85K8 in l... 40 5.2
26gb|AC004923.2| Homo sapiens PAC clone RP5-901A4 from 11, complet... 40 5.2
27emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chro... 40 5.2
28emb|AL137634.1|HSM802401 Homo sapiens mRNA; cDNA DKFZp434E145 (f... 40 5.2
29emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chr... 40 5.2 
>gb|AY484588.1| Musa acuminata clone MuG9, genomic sequence
          Length = 73268

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                        
Query: 208  taacttccgcatgccaggcactcttcccggttgttcaaggagcagacaacttgcgccatt 267
            |||||||| ||||||| ||||||||| ||||| | |||||| || ||||| || ||||||
Sbjct: 9500 taacttccacatgccatgcactcttcacggttttccaaggaacaaacaacctgtgccatt 9559

                    
Query: 268  ttggcttc 275
            ||||||||
Sbjct: 9560 ttggcttc 9567



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 355  tccacagtaaacttgattgcatcagcagc 383
            ||||||||||||||||||||||| |||||
Sbjct: 9732 tccacagtaaacttgattgcatccgcagc 9760
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>ref|XM_550374.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3103

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                        
Query: 206  tctaacttccgcatgccaggcactcttcccggttgttcaaggagcagacaacttgcgcca 265
            |||||||||| || |||| |||||| ||||||||||||||||| || || | ||| ||||
Sbjct: 2705 tctaacttccacacgccaagcactcctcccggttgttcaaggaacaaaccatttgagcca 2646

                               
Query: 266  ttttggcttcatcgtcctc 284
            |||| |||||  |||||||
Sbjct: 2645 ttttagcttccacgtcctc 2627



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 331  ccattgaccttcagaaagccagtatccacagtaaacttgattgcatcagcagctgc 386
            |||||| |||||| || | ||||||| || || ||||||||||| |||||||||||
Sbjct: 2598 ccattggccttcaaaagggcagtatcaactgtgaacttgattgcgtcagcagctgc 2543
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                           
Query: 206     tctaacttccgcatgccaggcactcttcccggttgttcaaggagcagacaacttgcgcca 265
               |||||||||| || |||| |||||| ||||||||||||||||| || || | ||| ||||
Sbjct: 3449091 tctaacttccacacgccaagcactcctcccggttgttcaaggaacaaaccatttgagcca 3449150

                                  
Query: 266     ttttggcttcatcgtcctc 284
               |||| |||||  |||||||
Sbjct: 3449151 ttttagcttccacgtcctc 3449169



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                       
Query: 331     ccattgaccttcagaaagccagtatccacagtaaacttgattgcatcagcagctgc 386
               |||||| |||||| || | ||||||| || || ||||||||||| |||||||||||
Sbjct: 3449272 ccattggccttcaaaagggcagtatcaactgtgaacttgattgcgtcagcagctgc 3449327
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>dbj|AP002864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0033B09
          Length = 143545

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                         
Query: 206   tctaacttccgcatgccaggcactcttcccggttgttcaaggagcagacaacttgcgcca 265
             |||||||||| || |||| |||||| ||||||||||||||||| || || | ||| ||||
Sbjct: 65795 tctaacttccacacgccaagcactcctcccggttgttcaaggaacaaaccatttgagcca 65854

                                
Query: 266   ttttggcttcatcgtcctc 284
             |||| |||||  |||||||
Sbjct: 65855 ttttagcttccacgtcctc 65873



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 331   ccattgaccttcagaaagccagtatccacagtaaacttgattgcatcagcagctgc 386
             |||||| |||||| || | ||||||| || || ||||||||||| |||||||||||
Sbjct: 65976 ccattggccttcaaaagggcagtatcaactgtgaacttgattgcgtcagcagctgc 66031
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>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone
              P0680A03
          Length = 156054

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                          
Query: 206    tctaacttccgcatgccaggcactcttcccggttgttcaaggagcagacaacttgcgcca 265
              |||||||||| || |||| |||||| ||||||||||||||||| || || | ||| ||||
Sbjct: 140645 tctaacttccacacgccaagcactcctcccggttgttcaaggaacaaaccatttgagcca 140704

                                 
Query: 266    ttttggcttcatcgtcctc 284
              |||| |||||  |||||||
Sbjct: 140705 ttttagcttccacgtcctc 140723



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                      
Query: 331    ccattgaccttcagaaagccagtatccacagtaaacttgattgcatcagcagctgc 386
              |||||| |||||| || | ||||||| || || ||||||||||| |||||||||||
Sbjct: 140826 ccattggccttcaaaagggcagtatcaactgtgaacttgattgcgtcagcagctgc 140881
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>dbj|AK068858.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169B12, full
            insert sequence
          Length = 3104

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                        
Query: 206  tctaacttccgcatgccaggcactcttcccggttgttcaaggagcagacaacttgcgcca 265
            |||||||||| || |||| |||||| ||||||||||||||||| || || | ||| ||||
Sbjct: 2705 tctaacttccacacgccaagcactcctcccggttgttcaaggaacaaaccatttgagcca 2646

                               
Query: 266  ttttggcttcatcgtcctc 284
            |||| |||||  |||||||
Sbjct: 2645 ttttagcttccacgtcctc 2627



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 331  ccattgaccttcagaaagccagtatccacagtaaacttgattgcatcagcagctgc 386
            |||||| |||||| || | ||||||| || || ||||||||||| |||||||||||
Sbjct: 2598 ccattggccttcaaaagggcagtatcaactgtgaacttgattgcgtcagcagctgc 2543
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>gb|AY105931.1| Zea mays PCO081802 mRNA sequence
          Length = 1120

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 206 tctaacttccgcatgccaggcactcttcccggttgttcaaggagcagac 254
           |||| ||||| || |||||||||||||||||||||||||| || |||||
Sbjct: 755 tctagcttccacacgccaggcactcttcccggttgttcaaagaacagac 707



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 352 gtatccacagtaaacttgattgcatcagcagc 383
           |||||||| || |||||||| |||||||||||
Sbjct: 624 gtatccactgtgaacttgatcgcatcagcagc 593
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 32     ccaacattggcaactcagccat 53
              ||||||||||||||||||||||
Sbjct: 442330 ccaacattggcaactcagccat 442309
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>ref|XM_468281.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2433

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 207  ctaacttccgcatgccaggcactcttcccggttgttcaagga 248
            |||||| || ||||||| ||| || |||||||||||||||||
Sbjct: 2433 ctaactaccacatgccaagcattcgtcccggttgttcaagga 2392
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>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0049O12, from chromosome 2, complete sequence
          Length = 155154

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 207    ctaacttccgcatgccaggcactcttcccggttgttcaagga 248
              |||||| || ||||||| ||| || |||||||||||||||||
Sbjct: 153798 ctaactaccacatgccaagcattcgtcccggttgttcaagga 153839
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                          
Query: 207      ctaacttccgcatgccaggcactcttcccggttgttcaagga 248
                |||||| || ||||||| ||| || |||||||||||||||||
Sbjct: 34351308 ctaactaccacatgccaagcattcgtcccggttgttcaagga 34351267
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>dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1548_F12
          Length = 118814

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 207   ctaacttccgcatgccaggcactcttcccggttgttcaagga 248
             |||||| || ||||||| ||| || |||||||||||||||||
Sbjct: 48955 ctaactaccacatgccaagcattcgtcccggttgttcaagga 48914
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>ref|XM_657547.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5035.2), mRNA
          Length = 1443

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 268 ttggcttcatcgtcctcctct 288
           |||||||||||||||||||||
Sbjct: 872 ttggcttcatcgtcctcctct 892
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>gb|AC023480.7| Homo sapiens chromosome 3 clone RP11-399K19 map 3p, complete sequence
          Length = 199814

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 179   aagagaaaaatagatgcaaca 199
             |||||||||||||||||||||
Sbjct: 46858 aagagaaaaatagatgcaaca 46878
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>gb|AC016146.18| Homo sapiens 3 BAC RP11-327M20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 190456

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 179    aagagaaaaatagatgcaaca 199
              |||||||||||||||||||||
Sbjct: 126272 aagagaaaaatagatgcaaca 126292
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>gb|AC011410.6|AC011410 Homo sapiens chromosome 5 clone CTB-78H18, complete sequence
          Length = 119649

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 359   cagtaaacttgattgcatcag 379
             |||||||||||||||||||||
Sbjct: 50942 cagtaaacttgattgcatcag 50922
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>gb|AC018503.6|AC018503 Homo sapiens chromosome 3 clone RP11-41L18 map 3p, complete sequence
          Length = 191161

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 179    aagagaaaaatagatgcaaca 199
              |||||||||||||||||||||
Sbjct: 136941 aagagaaaaatagatgcaaca 136921
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>gb|AC148833.5| Pan troglodytes BAC clone CH251-55M19 from chromosome 7, complete
             sequence
          Length = 206418

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    tcaagggctgcccagcaagg 72
             ||||||||||||||||||||
Sbjct: 35898 tcaagggctgcccagcaagg 35917
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>ref|XM_800388.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein
           (MASP) (Tc00.1047053510917.9) partial mRNA
          Length = 822

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 cttcatcgtcctcctctgct 291
           ||||||||||||||||||||
Sbjct: 421 cttcatcgtcctcctctgct 402
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>ref|XM_803552.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein
           (MASP) (Tc00.1047053508013.110) partial mRNA
          Length = 816

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 cttcatcgtcctcctctgct 291
           ||||||||||||||||||||
Sbjct: 421 cttcatcgtcctcctctgct 402
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>ref|XM_816306.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein
           (MASP) (Tc00.1047053511173.64) partial mRNA
          Length = 816

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 cttcatcgtcctcctctgct 291
           ||||||||||||||||||||
Sbjct: 415 cttcatcgtcctcctctgct 396
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>gb|AC005535.2| Homo sapiens PAC clone RP5-1168M19 from 7, complete sequence
          Length = 157813

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    tcaagggctgcccagcaagg 72
             ||||||||||||||||||||
Sbjct: 97407 tcaagggctgcccagcaagg 97426
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 131     ttcaatgccaatgatcagaccgtt 154
               ||||||||||||| ||||||||||
Sbjct: 2170655 ttcaatgccaatggtcagaccgtt 2170678
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>gb|AC034259.7| Homo sapiens chromosome 11, clone RP11-138N3, complete sequence
          Length = 206192

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   gtgccattagcatccccatt 335
             ||||||||||||||||||||
Sbjct: 71361 gtgccattagcatccccatt 71342
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>emb|BX547938.9| Zebrafish DNA sequence from clone DKEY-85K8 in linkage group 5,
             complete sequence
          Length = 162785

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   ttaagagaaaaatagatgca 196
             ||||||||||||||||||||
Sbjct: 36686 ttaagagaaaaatagatgca 36667
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>gb|AC004923.2| Homo sapiens PAC clone RP5-901A4 from 11, complete sequence
          Length = 94851

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 316   gtgccattagcatccccatt 335
             ||||||||||||||||||||
Sbjct: 16552 gtgccattagcatccccatt 16533
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>emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chromosome 2, complete
             sequence
          Length = 206168

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   ccattgaccttcagaaagcc 350
             ||||||||||||||||||||
Sbjct: 71057 ccattgaccttcagaaagcc 71038
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>emb|AL137634.1|HSM802401 Homo sapiens mRNA; cDNA DKFZp434E145 (from clone DKFZp434E145)
          Length = 5317

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 316  gtgccattagcatccccatt 335
            ||||||||||||||||||||
Sbjct: 1090 gtgccattagcatccccatt 1071
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>emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chromosome 2, complete
              sequence
          Length = 207901

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     caagggctgcccagcaaggg 73
              ||||||||||||||||||||
Sbjct: 110506 caagggctgcccagcaaggg 110525


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,332,670
Number of Sequences: 3902068
Number of extensions: 3332670
Number of successful extensions: 60490
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60398
Number of HSP's gapped (non-prelim): 92
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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