ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX465206.15| Zebrafish DNA sequence from clone DKEYP-25A3 in... 44 0.29
2emb|BX000986.4| Zebrafish DNA sequence from clone CH211-210B19 i... 44 0.29
3gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, co... 42 1.1
4emb|BX649352.15| Zebrafish DNA sequence from clone DKEY-196J7 in... 42 1.1
5gb|AC114612.13| Mus musculus chromosome 7, clone RP24-80O23, com... 42 1.1
6gb|AC092129.3| Homo sapiens chromosome 16 clone RP11-140O8, comp... 40 4.5
7gb|AC095039.3| Homo sapiens BAC clone RP11-12G8 from 7, complete... 40 4.5
8emb|BX248330.6| Zebrafish DNA sequence from clone CH211-278E17 i... 40 4.5

>emb|BX465206.15| Zebrafish DNA sequence from clone DKEYP-25A3 in linkage group 19,
              complete sequence
          Length = 161014

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 11     gcataacatgttaaactcactg 32
              ||||||||||||||||||||||
Sbjct: 142102 gcataacatgttaaactcactg 142123



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>emb|BX000986.4| Zebrafish DNA sequence from clone CH211-210B19 in linkage group 19,
              complete sequence
          Length = 151501

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 11     gcataacatgttaaactcactg 32
              ||||||||||||||||||||||
Sbjct: 117370 gcataacatgttaaactcactg 117349



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>gb|AC107862.10| Mus musculus chromosome 7, clone RP23-378D16, complete sequence
          Length = 188701

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 311    ccatgttcaacacaagagcagggtt 335
              ||||||||||||||||| |||||||
Sbjct: 140143 ccatgttcaacacaagaacagggtt 140167



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>emb|BX649352.15| Zebrafish DNA sequence from clone DKEY-196J7 in linkage group 1,
             complete sequence
          Length = 226763

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 205   gcataacatgttcaactcaca 225
             |||||||||||||||||||||
Sbjct: 84926 gcataacatgttcaactcaca 84946



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>gb|AC114612.13| Mus musculus chromosome 7, clone RP24-80O23, complete sequence
          Length = 189471

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 311    ccatgttcaacacaagagcagggtt 335
              ||||||||||||||||| |||||||
Sbjct: 139777 ccatgttcaacacaagaacagggtt 139753



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>gb|AC092129.3| Homo sapiens chromosome 16 clone RP11-140O8, complete sequence
          Length = 190333

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     ttcaactcacagggcataga 109
              ||||||||||||||||||||
Sbjct: 101829 ttcaactcacagggcataga 101810



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>gb|AC095039.3| Homo sapiens BAC clone RP11-12G8 from 7, complete sequence
          Length = 70416

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 11   gcataacatgttaaactcac 30
            ||||||||||||||||||||
Sbjct: 4765 gcataacatgttaaactcac 4784



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>emb|BX248330.6| Zebrafish DNA sequence from clone CH211-278E17 in linkage group 22,
              complete sequence
          Length = 189880

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    actacacataacatgttcaa 149
              ||||||||||||||||||||
Sbjct: 164329 actacacataacatgttcaa 164310


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,565,631
Number of Sequences: 3902068
Number of extensions: 2565631
Number of successful extensions: 42736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42712
Number of HSP's gapped (non-prelim): 24
length of query: 338
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 316
effective length of database: 17,147,199,772
effective search space: 5418515127952
effective search space used: 5418515127952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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