ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC010241.5| Homo sapiens chromosome 5 clone CTC-355H1, comple... 44 0.29
2gb|AC018760.4|AC018760 Homo sapiens chromosome 5 clone CTB-99P17... 44 0.29
3gb|AY115845.1| Medicago truncatula auxin influx carrier protein ... 40 4.6
4gb|AC151838.6| Mus musculus BAC clone RP23-226C6 from chromosome... 40 4.6
5dbj|AB251575.1| Oryzias latipes gene for mesp, complete cds 40 4.6
6emb|BX510928.5| Zebrafish DNA sequence from clone DKEY-190G11 in... 40 4.6
7gb|AC109484.2| Homo sapiens chromosome 5 clone RP11-514A16, comp... 40 4.6
8gb|AC151841.5| Mus musculus BAC clone RP23-128P10 from chromosom... 40 4.6
9gb|AC156794.3| Mus musculus BAC clone RP24-149L24 from chromosom... 40 4.6
10gb|AC174799.2| Mus musculus BAC clone CH25-502A9 from chromosome... 40 4.6

>gb|AC010241.5| Homo sapiens chromosome 5 clone CTC-355H1, complete sequence
          Length = 126582

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 46    gaaacaaaattggccaactgtt 67
             ||||||||||||||||||||||
Sbjct: 18543 gaaacaaaattggccaactgtt 18522



to top

>gb|AC018760.4|AC018760 Homo sapiens chromosome 5 clone CTB-99P17, complete sequence
          Length = 95855

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 46    gaaacaaaattggccaactgtt 67
             ||||||||||||||||||||||
Sbjct: 95383 gaaacaaaattggccaactgtt 95362



to top

>gb|AY115845.1| Medicago truncatula auxin influx carrier protein (LAX5) gene,
            complete cds
          Length = 3948

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 212  agcaatatcacatgcatctc 231
            ||||||||||||||||||||
Sbjct: 1120 agcaatatcacatgcatctc 1139



to top

>gb|AC151838.6| Mus musculus BAC clone RP23-226C6 from chromosome 7, complete sequence
          Length = 222398

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   agacagtgcgtcctggctgg 322
             ||||||||||||||||||||
Sbjct: 23243 agacagtgcgtcctggctgg 23262



to top

>dbj|AB251575.1| Oryzias latipes gene for mesp, complete cds
          Length = 153079

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   ttaccacatctttctctttt 199
             ||||||||||||||||||||
Sbjct: 72182 ttaccacatctttctctttt 72163



to top

>emb|BX510928.5| Zebrafish DNA sequence from clone DKEY-190G11 in linkage group 8,
             complete sequence
          Length = 197947

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   atgacaaaatctacataagc 133
             ||||||||||||||||||||
Sbjct: 74665 atgacaaaatctacataagc 74646



to top

>gb|AC109484.2| Homo sapiens chromosome 5 clone RP11-514A16, complete sequence
          Length = 187174

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 67    tctgtctctcaacttttcaacata 90
             ||||||||||||||||| ||||||
Sbjct: 51265 tctgtctctcaacttttaaacata 51288



to top

>gb|AC151841.5| Mus musculus BAC clone RP23-128P10 from chromosome 7, complete sequence
          Length = 212484

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   agacagtgcgtcctggctgg 322
             ||||||||||||||||||||
Sbjct: 96645 agacagtgcgtcctggctgg 96664



to top

>gb|AC156794.3| Mus musculus BAC clone RP24-149L24 from chromosome 9, complete sequence
          Length = 160212

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 50    caaaattggccaactgttctgtct 73
             |||||||| |||||||||||||||
Sbjct: 77078 caaaattgcccaactgttctgtct 77101



to top

>gb|AC174799.2| Mus musculus BAC clone CH25-502A9 from chromosome 9, complete sequence
          Length = 112760

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 50    caaaattggccaactgttctgtct 73
             |||||||| |||||||||||||||
Sbjct: 86425 caaaattgcccaactgttctgtct 86448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,669,989
Number of Sequences: 3902068
Number of extensions: 2669989
Number of successful extensions: 45419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45403
Number of HSP's gapped (non-prelim): 16
length of query: 344
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 322
effective length of database: 17,147,199,772
effective search space: 5521398326584
effective search space used: 5521398326584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top