ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl13c05 |
|---|---|
| Clone Library Name | barley_pub |
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 89.4 bits (220), Expect = 2e-18 Identities = 41/58 (70%), Positives = 48/58 (82%) Frame = -2 Query: 331 HLYPFPKGFMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFISDTQKAVAMGQCGVDC 158 HLYPF KG MG+QNRTPTIV++WSILLASIFSL+WV+IDPF+ Q + QCGVDC Sbjct: 993 HLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFL-PKQTGPLLKQCGVDC 1049
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 88.6 bits (218), Expect = 4e-18 Identities = 39/58 (67%), Positives = 48/58 (82%) Frame = -2 Query: 331 HLYPFPKGFMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFISDTQKAVAMGQCGVDC 158 HLYPF KG MG+QNRTPTIV++WS+LLASIFSLLWV+IDPF+ T K +CG++C Sbjct: 970 HLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKT-KGPDTSKCGINC 1026
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 85.5 bits (210), Expect = 3e-17 Identities = 39/58 (67%), Positives = 47/58 (81%) Frame = -2 Query: 331 HLYPFPKGFMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFISDTQKAVAMGQCGVDC 158 HLYPF KG MG+QNRTPTIV+VWS+LLASIFSLLWV+IDPF S + +CG++C Sbjct: 1009 HLYPFLKGLMGRQNRTPTIVVVWSVLLASIFSLLWVRIDPFTSRVTGPDIL-ECGINC 1065
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 81.6 bits (200), Expect = 4e-16 Identities = 37/59 (62%), Positives = 49/59 (83%), Gaps = 1/59 (1%) Frame = -2 Query: 331 HLYPFPKGFMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFISDTQ-KAVAMGQCGVDC 158 HLYPF KG MG+QNRTPTIVI+WSILLAS+FSL+WV+I+PF+S T ++++ +DC Sbjct: 927 HLYPFLKGLMGRQNRTPTIVILWSILLASVFSLVWVRINPFVSKTDTTSLSLNCLLIDC 985
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 80.5 bits (197), Expect = 1e-15 Identities = 36/45 (80%), Positives = 41/45 (91%) Frame = -2 Query: 331 HLYPFPKGFMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFISDT 197 HLYPF KG +G+QNRTPTIVIVWS LLASIFSLLWV+I+PF+S T Sbjct: 1011 HLYPFLKGLLGRQNRTPTIVIVWSALLASIFSLLWVRINPFVSTT 1055
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 79.3 bits (194), Expect = 2e-15 Identities = 35/48 (72%), Positives = 41/48 (85%) Frame = -2 Query: 331 HLYPFPKGFMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFISDTQKA 188 HLYPF KG +G+QNRTPTIVIVWS+LLASIFSLLWV+I+PF+ A Sbjct: 1024 HLYPFLKGLLGRQNRTPTIVIVWSVLLASIFSLLWVRINPFVDANPNA 1071
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 78.6 bits (192), Expect = 4e-15 Identities = 34/58 (58%), Positives = 46/58 (79%) Frame = -2 Query: 331 HLYPFPKGFMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFISDTQKAVAMGQCGVDC 158 HLYPF KG +GKQ+R PTI++VWSILLASI +LLWV+++PF+S + + CG+DC Sbjct: 1031 HLYPFLKGLLGKQDRVPTIILVWSILLASILTLLWVRVNPFVSKDGPVLEI--CGLDC 1086
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 76.6 bits (187), Expect = 1e-14 Identities = 33/58 (56%), Positives = 46/58 (79%) Frame = -2 Query: 331 HLYPFPKGFMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFISDTQKAVAMGQCGVDC 158 HLYPF KG +GKQ+R PTI++VWSILLASI +LLWV+++PF++ + + CG+DC Sbjct: 1028 HLYPFLKGLLGKQDRMPTIIVVWSILLASILTLLWVRVNPFVAKGGPILEI--CGLDC 1083
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 76.3 bits (186), Expect = 2e-14 Identities = 33/58 (56%), Positives = 46/58 (79%) Frame = -2 Query: 331 HLYPFPKGFMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFISDTQKAVAMGQCGVDC 158 HLYPF KG +GKQ+R PTI++VWSILLASI +LLWV+++PF++ + + CG+DC Sbjct: 1013 HLYPFLKGLLGKQDRMPTIILVWSILLASILTLLWVRVNPFVAKGGPILEI--CGLDC 1068
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 73.9 bits (180), Expect = 9e-14 Identities = 31/58 (53%), Positives = 46/58 (79%) Frame = -2 Query: 331 HLYPFPKGFMGKQNRTPTIVIVWSILLASIFSLLWVKIDPFISDTQKAVAMGQCGVDC 158 HLYPF KG +GKQ++ PTI++VWSILLASI +LLWV+++PF++ + + CG++C Sbjct: 1027 HLYPFLKGMLGKQDKMPTIIVVWSILLASILTLLWVRVNPFVAKGGPVLEI--CGLNC 1082
>DPOL_ADEB2 (O72539) DNA polymerase (EC 2.7.7.7)| Length = 1017 Score = 31.6 bits (70), Expect = 0.52 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Frame = +3 Query: 45 EGAIITYIKLRLHLQQ---QNPIQPPPVF--TRGGQILFGADQQSTPHCPMATAFWVSDM 209 EGA TYIK RL QQ +NPI P P+F + ++ QS+ C F+ + Sbjct: 9 EGATFTYIKGRLIKQQAAVENPILPFPIFFLIKQNKVFLIKSFQSSQKCEFCGDFFANSH 68 Query: 210 KGSI 221 S+ Sbjct: 69 TCSV 72
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 31.6 bits (70), Expect = 0.52 Identities = 17/43 (39%), Positives = 20/43 (46%) Frame = -1 Query: 305 HGEAEPHANHRHCLVHPPSLHLFPPVGEDRPFHIRYPESRRHG 177 HG+ P +H H PPS PP G+ P H R RHG Sbjct: 137 HGQRPPSPSHGHA---PPSGGHTPPRGQHPPSHRRPSPPSRHG 176
>LDOX_VITVI (P51093) Leucoanthocyanidin dioxygenase (EC 1.14.11.19) (LDOX)| (Leucocyanidin oxygenase) (Leucoanthocyanidin hydroxylase) Length = 362 Score = 30.8 bits (68), Expect = 0.88 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -1 Query: 224 EDRPFHIRYPESRRHGAVWRRLLIGAEEYLPPSCKY 117 ED FH+ +PE +R +W + +Y+P +C+Y Sbjct: 146 EDYFFHLIFPEDKRDMTIWPKT---PSDYVPATCEY 178
>TYY1_HUMAN (P25490) Transcriptional repressor protein YY1 (Yin and yang 1)| (YY-1) (Delta transcription factor) (NF-E1) Length = 414 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -1 Query: 311 GFHGEAEPHANHRHCLVHPPSLHLFPPVGED 219 G HG A H +H H HPP + L P V +D Sbjct: 63 GGHGHAGHHHHHHHHHHHPPMIALQPLVTDD 93
>NEF_SIVV1 (P27970) Nef protein (Negative factor) (F-protein) (3'ORF)| Length = 229 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/29 (51%), Positives = 16/29 (55%) Frame = -1 Query: 320 LPQGFHGEAEPHANHRHCLVHPPSLHLFP 234 +P H EAE RHCLVHP LH P Sbjct: 164 VPVALHEEAE--TCERHCLVHPAQLHEDP 190
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = -1 Query: 332 PSLP--LPQGFHGEAEPHANHRHCLVHPPSLHLFPPVGEDRP 213 P LP LPQ PH N +H +V PP+LH P RP Sbjct: 835 PELPPHLPQPPEHSTPPHLN-QHAVVSPPALHNALPQQPSRP 875
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = -1 Query: 332 PSLP--LPQGFHGEAEPHANHRHCLVHPPSLHLFPPVGEDRP 213 P LP LPQ PH N +H +V PP+LH P RP Sbjct: 833 PELPPHLPQPPEHSTPPHLN-QHAVVSPPALHNALPQQPSRP 873
>SODM_SCHPO (Q9UQX0) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 218 Score = 29.3 bits (64), Expect = 2.6 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = -3 Query: 186 SPWGSVASTADRRRRVSAPLV*IPEGVGWDFVVVDEDGVL 67 S WGS+ D ++ ++A L I +G GW +++VD+DG L Sbjct: 125 SKWGSLE---DFQKEMNAALASI-QGSGWAWLIVDKDGSL 160
>KR1_HHV11 (P04413) Serine/threonine-protein kinase (EC 2.7.11.1)| Length = 481 Score = 29.3 bits (64), Expect = 2.6 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Frame = -1 Query: 296 AEPHANHRHCLVHPPSLHLFPPVGEDRPFHIRYPESRRHGAVW----RRLLIGAEEYLPP 129 A+ + N + + PS V ED P + YPE LIGA +++PP Sbjct: 75 AQMYGNQDYPIEDDPSADAADDVDEDAPDDVAYPEEYAEELFLPGDATGPLIGANDHIPP 134 Query: 128 SC 123 C Sbjct: 135 PC 136
>FA43B_HUMAN (Q6ZT52) Protein FAM43B| Length = 329 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +3 Query: 174 CPMATAFWVSDMKGSIFTHRREKMEARRMDQTMTM 278 CP W + G +F RR+K+E + D T T+ Sbjct: 40 CPDLLPDWPLERLGRVFRSRRQKVELNKEDPTYTV 74
>PF21B_HUMAN (Q96EK2) PHD finger protein 21B| Length = 531 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -1 Query: 296 AEPHANHRHCLVHPPSLHLFPP 231 + PH HC +HP SL L PP Sbjct: 195 SSPHPATHHCPLHPSSLPLTPP 216
>VG7_SPV4 (P11339) Gene 7 protein| Length = 48 Score = 28.1 bits (61), Expect = 5.7 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -2 Query: 277 IVIVWSILLASIFSLLW 227 +V+VW ILL+ +F LLW Sbjct: 19 LVVVWIILLSEVFVLLW 35
>LOZEN_DROME (Q9W349) Protein lozenge| Length = 826 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = -1 Query: 290 PHANHRHCLVHPPSLHLFPPVGEDRPFHIRYPESRRHGAVW 168 PHA H H HPP + +PP G P + + G W Sbjct: 130 PHAPHHHHHHHPP--YPYPPAGPHPPAMVTSSSTSPTGNGW 168
>SPT_ARATH (Q9FUA4) Protein SPATULA| Length = 373 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%) Frame = -1 Query: 311 GFHGEAEPHANHRHCLV--HPPS 249 G HG +PHA++ LV HPPS Sbjct: 80 GVHGSGDPHADNSRSLVSHHPPS 102
>WTM1_YEAST (Q12363) Transcriptional modulator WTM1| Length = 437 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +1 Query: 112 LRYLHEGGRYSSAPISSRRHTAPW 183 LR+LH+GG S RR+TA W Sbjct: 386 LRFLHKGGSRRSPKQIGRRNTAAW 409
>COX1_PLACH (O99255) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) Length = 476 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 319 FPKGFMGKQNRTPTIVIVWSIL 254 F + F GK R TI+++WSIL Sbjct: 402 FQESFFGKTLRENTIIVLWSIL 423
>U3045_HUMAN (Q6UWE3) Protein UNQ3045/PRO9861 precursor| Length = 153 Score = 27.7 bits (60), Expect = 7.4 Identities = 21/68 (30%), Positives = 24/68 (35%) Frame = -1 Query: 326 LPLPQGFHGEAEPHANHRHCLVHPPSLHLFPPVGEDRPFHIRYPESRRHGAVWRRLLIGA 147 LPLP G VH L +FPPV P A W L G Sbjct: 104 LPLPDGLD-------------VHIQGLDVFPPV----------PYDLEEDAGWSLLPWGH 140 Query: 146 EEYLPPSC 123 +LPP+C Sbjct: 141 RPWLPPTC 148
>WRK15_ARATH (O22176) Probable WRKY transcription factor 15 (WRKY DNA-binding| protein 15) Length = 317 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/62 (25%), Positives = 28/62 (45%) Frame = +3 Query: 93 QNPIQPPPVFTRGGQILFGADQQSTPHCPMATAFWVSDMKGSIFTHRREKMEARRMDQTM 272 Q+P+ PPP R G F + ++ +++ SD + I H+R A QT Sbjct: 119 QSPLPPPPQMIRKGS--FSSSMKTIDFSSLSSVTTESDNQKKIHHHQRPSETAPFASQTQ 176 Query: 273 TM 278 ++ Sbjct: 177 SL 178
>SSA1_PASHA (P31631) Serotype-specific antigen 1 precursor (EC 3.4.21.-)| Length = 932 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -1 Query: 320 LPQGFHGEAEPHANHRHCLVHPPSLHLFPPVGEDRPFHIRYPE 192 + +GF + H++H H L+H L P GE R + YP+ Sbjct: 57 MDEGFMVKHPRHSSHLHPLIH----QLTTPEGEVRIYDASYPQ 95
>NKX25_CHICK (Q90788) Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)| (cNKX-2.5) Length = 294 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +3 Query: 222 FTHRREKMEARRMDQTMTMVGV 287 F +RR K + +R DQT+ MVG+ Sbjct: 167 FQNRRYKCKRQRQDQTLEMVGI 188
>NU3M_XENLA (P03900) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH| dehydrogenase subunit 3) Length = 114 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 Query: 328 LYPFPKGFMGKQNRTPTIVIVWSILLASIFSL 233 L PFP Q TP+IVI+W+ L+ ++ +L Sbjct: 71 LLPFP---WAAQLNTPSIVILWAALILTLLTL 99
>SYV_METCA (Q606C1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 921 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -1 Query: 293 EPHANHRHCLVHPPSLHLFPPVGEDRPFHIRYPESRRHGAV 171 EPHA + H + F PVGE P+ I P G++ Sbjct: 6 EPHAIEQRWYQHWEASGFFAPVGEGAPYCIMIPPPNVTGSL 46
>LDOX_ARATH (Q96323) Leucoanthocyanidin dioxygenase (EC 1.14.11.19) (LDOX)| (Leucocyanidin oxygenase) (Leucoanthocyanidin hydroxylase) (Anthocyanidin synthase) (ANS) Length = 356 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -1 Query: 224 EDRPFHIRYPESRRHGAVWRRLLIGAEEYLPPSCKYRRGL 105 ED FH+ YPE +R ++W + +Y+ + +Y + L Sbjct: 140 EDYFFHLAYPEEKRDLSIWPKT---PSDYIEATSEYAKCL 176
>PPCK_SHEON (Q8EKD3) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 513 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = -2 Query: 241 FSLLWVKIDPFISDTQKAVAMGQCGVDC*SAPKSICPPRVNTGGGW 104 F LW +++ F++D + V+ + G D P+ P RV T W Sbjct: 76 FEGLWARVEAFLADKELFVSDLEVGAD----PEHYQPVRVTTQYAW 117 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,758,808 Number of Sequences: 219361 Number of extensions: 1176289 Number of successful extensions: 3402 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3397 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
