ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FRZG_MYXXA (P31758) Protein-glutamate methylesterase frzG (EC 3.... 30 1.5
2MT2_CANGA (P15114) Metallothionein-2 (MT-2) (Metallothionein-II)... 30 1.9
3GRN_MOUSE (P28798) Granulins precursor (Proepithelin) (PEPI) (PC... 29 3.3
4FIXC_RHISN (Q53208) Protein fixC 28 4.3
5AMY1_SACFI (P21567) Alpha-amylase precursor (EC 3.2.1.1) 28 7.3
6FIXC_RHIME (P09820) Protein fixC 28 7.3
7TOR2_YEAST (P32600) Phosphatidylinositol 3-kinase TOR2 (EC 2.7.1... 27 9.6

>FRZG_MYXXA (P31758) Protein-glutamate methylesterase frzG (EC 3.1.1.61)|
          Length = 334

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 339 PAAHASELGDRIAQSLEAWSSTSVVRRIVGAEHEVL 232
           P A+   + D   + L  W S     R++ AEH+VL
Sbjct: 177 PIAYCQHISDGFTEGLAHWLSNETALRVLEAEHDVL 212



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>MT2_CANGA (P15114) Metallothionein-2 (MT-2) (Metallothionein-II) (MT-II)|
           [Contains: Metallothionein-2' (MT-2')
           (Metallothionein-II') (MT-II')]
          Length = 51

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 115 SCCGVPLYICCNSITEWCCTRAVRCLTC 32
           +CC  P   C NS +  C  +  +C TC
Sbjct: 22  NCCAKPACACTNSASNECSCQTCKCQTC 49



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>GRN_MOUSE (P28798) Granulins precursor (Proepithelin) (PEPI) (PC cell-derived|
           growth factor) (PCDGF) [Contains: Acrogranin;
           Granulin-1; Granulin-2; Granulin-3; Granulin-4;
           Granulin-5; Granulin-6; Granulin-7]
          Length = 589

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 118 YSCCGVPLYICCNSITEWCCTRAVRCLTCFY 26
           + CC +P  +CC S  + CC +   CL   Y
Sbjct: 384 WGCCPIPEAVCC-SDNQHCCPQGFTCLAQGY 413



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>FIXC_RHISN (Q53208) Protein fixC|
          Length = 435

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 135 QNFINSSATPKIEKPILT*AALV*SR 212
           QNF+    TPKIEK   T AAL+ +R
Sbjct: 393 QNFVRVDGTPKIEKERATTAALIKAR 418



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>AMY1_SACFI (P21567) Alpha-amylase precursor (EC 3.2.1.1)|
          Length = 494

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +2

Query: 194 SFSLESTIFLNSASTSCSAPTILLTTLVELH 286
           S S E T  ++S ++SCS PT LLT  VE H
Sbjct: 294 SSSSELTQMISSVASSCSDPT-LLTNFVENH 323



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>FIXC_RHIME (P09820) Protein fixC|
          Length = 435

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 135 QNFINSSATPKIEKPILT*AALV*SR 212
           QNF+    TPKIE+ I T AA + +R
Sbjct: 393 QNFVRVDGTPKIEREIATTAAFLRAR 418



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>TOR2_YEAST (P32600) Phosphatidylinositol 3-kinase TOR2 (EC 2.7.1.137)|
           (PtdIns-3-kinase TOR2) (PI3-kinase TOR2) (PI3K TOR2)
          Length = 2473

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = +1

Query: 28  KSKSNNEQL*CNTILLYCYNICIMEHHNKNRTKFMCKISSTLVQH 162
           K+  +N+ +    IL+ C+ +  + HH  + T+F+  I+ + ++H
Sbjct: 560 KTGESNDDITDAQILIQCFKMLQLIHHQYSLTEFVRLITISYIEH 604


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,592,053
Number of Sequences: 219361
Number of extensions: 660787
Number of successful extensions: 1661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1660
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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