ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl13b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DUT_BIFLO (Q8G4E8) Deoxyuridine 5'-triphosphate nucleotidohydrol... 31 0.75
2YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c... 28 8.3

>DUT_BIFLO (Q8G4E8) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 158

 Score = 31.2 bits (69), Expect = 0.75
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
 Frame = +2

Query: 5   FDENFNKLQSTNILLKSL----VAEVHFITYKDATSDL 106
           FDE +N+ +ST +L+KSL     A++H+    DA +DL
Sbjct: 3   FDETYNEPESTEVLVKSLDPEHPAQLHYAHAGDAGADL 40



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>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III|
          Length = 654

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 17  FNKLQSTNILLKSLVAEVHFITYKDATSDLPVL*C 121
           F K++   IL K  +A VHF+  +DA   +  L C
Sbjct: 322 FGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLSC 356


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,200,046
Number of Sequences: 219361
Number of extensions: 497063
Number of successful extensions: 974
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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